>input_sequence_66242
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-------------------------------GCCGGAGACAACCACCAAACCCACGCGTCCCC--------TCCCCTCCT
CTTTCCACAG----CGCGGCGCCGATGGCCACGGCGCACTACTACCCGCCGCCGCCGCCGCCGATCGCCCACCCGCTTCC
AAGGCCGCACGCCGCCGACAACGCCG---------TCCCCGACGACGGCGGCAGCGACAGCGAGAGCGTGGCGGAGTCGT
CGTGCCCGCACCAGCACCCGCGCCGGCCGACGGCCA---GGGACGAGGAGGAGGAGGAGGA---CGGGTGCA---GCGGC
AGCTGCGTGGAGGCGGACGAGTACTGGGGCTACTACTACCAGCAGCAGC------AGCATCCGCAGGAAGCCGACGACGA
GGAGGAGGTCAGCACGGCGAGCGTCTGGTGGAAGAAGAAACGGGCAGCGGCGGCGGCTGGTAGGGCCGGCGGCGTGTTCC
CTTCGTCTTCGTCGGCTGCGGCCCGTCGTGAGGGGGAGGAGAAGAAGGCGGAGGACCCGAAGCGGGCGGCGGCGCGGCAG
GAGGAGGACCGCAAGTTCTGGGCGGACTGCCTCGCCACCGGGTACCCATGAA--------------AGCCATAGCTCAGC
ATGCAAAGGCCATGGCAAA-AAGCCATGAGCGCCGCTAACCGAAACTGCAGCCCG---ACCCAAGCGTATGCCTACCTTT
GTTTGTTTGTTTG---------TTTGTTTTCTTTGTACATACATAATATATTC-----AACTCCTCAACAAGTCATTGGG
TGGCGTATTTTGACCCCCGT-AAGCTTTACAGAAAGAATCGATCTTCTTCTTCTTTTCTTGTTTTTTTTAATAGTTTGGA
TTGCTTACCACATGTGTCAGGTGGTTCTTTTCTTGTTGTTGAGGGCGAAA-----GAATTGAATCTCTGTGCAAACTAGT
ACGTAGTAGAAAATAGAGAACTGCTATACAG-------------------------------------------------
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>chr2D_1_TraesCS2D01G126500
TATGTATTATTTTCTTGCTTGTTTGTACCAGGTGAAGATTGTATGATCAATATCAATAATTACCATTGTTGTAGTATTTC
CTTACTTATCATCAACCATTAATTAC---GTATTATTTTCTTCCTTATTTGTCTAAGGTGTAGATTATATGATCAGTATC
AATAATT-ACCATTGTCATAATATTTCCTTGCTTACCCTCAACCATAGATTAAGCAATATTTTCTTCCTTATATGTACTA
GGTGAAGATTATATGATCAATATCAATAATTACCGCGGTTATTTGCTTACTCCTACTTAC--CCTCAACCATTGATTACA
CAATATTTTCTTCCTTATATGTACTAGTAGGTGAAGATTATATGATCACTATCATTAATTACCATTGTTATTTACTTACT
TACCATCATCTAGTAATTACATAACATTTTCTTCCATATTAGTACGTACCAGGTGAAGATTATA-TGATCAATGTCATTA
ATTATTAAAATCTGAAAAAT--ATTCTCATATAAAAAATGGAAAACAAAAATTTTGCGGGAAAATGGTAAGAAAAATTGA
CCACTATTCCCTCCGTTCACAAAATAAGAGGTTCTAACT-----------------------------------------
------------------TTTTTC-TGATTCGGATGTATATAGACATATTTTAATATGTTTGTTCACTCATTTTAGCCCG
TACGTAGACCATATTGAAATGTTCAAAACGTCTTATATTCATGAACGGATGAAGTACATCATTTCTAAAAAAAAGTACAA
TAGAAATGATGCAAAGGCTGACCAAGGATTTCCTATATATAATATCCTGAACTCACACCAACTGTCCAACATAATCTGAG
GGTTTCAGTAGACCAACTAAAATCCAATAGTT-TATGGGCATCGGCATCGTCATCGTCTTTTTTCCAATTTT-GCGTGTG
GCGAAGCAGTGGGAAGCTCCAGCACTCGTGCCATCGACCGCACTCCATTTATATACTTTTAGAAACCGTGGGTGCGTGCT
ATAAATACCAAGGGTCTCCGTCCAGCTCGCCGCCGGAGACAACCACCAAACCCACGCGTCCCC--------TCCCCTCCT
CTTTCCACAG----CGCGGCGCCGATGGCCACGGCGCACTACTACCCGCCGCCGCCGCCGCCGATCGCCCACCCGCTTCC
AAGGCCGCACGCCGCCGACAACGCCG---------TCCCCGACGACGGCGGCAGCGACAGCGAGAGCGTGGCGGAGTCGT
CGTGCCCGCACCAGCACCCGCGCCGGCCGACGGCCA---GGGACGAGGAGGAGGAGGAGGA---CGGGTGCA---GCGGC
AGCTGCGTGGAGGCGGACGAGTACTGGGGCTACTACTACCAGCAGCAGC------AGCATCCGCAGGAAGCCGACGACGA
GGAGGAGGTCAGCACGGCGAGCGTCTGGTGGAAGAAGAAACGGGCAGCGGCGGCGGCTGGTAGGGCCGGCGGCGTGTTCC
CTTCGTCTTCGTCGGCTGCGGCCCGTCGTGAGGGGGAGGAGAAGAAGGCGGAGGACCCGAAGCGGGCGGCGGCGCGGCAG
GAGGAGGACCGCAAGTTCTGGGCGGACTGCCTCGCCACCGGGTACCCATGAA--------------AGCCATAGCTCAGC
ATGCAAAGGCCATGGCAAA-AAGCCATGAGCGCCGCTAACCGAAACTGCAGCCCG---ACCCAAGCGTATGCCTACCTTT
GTTTGTTTGTTTG---------TTTGTTTTCTTTGTACATACATAATATATTC-----AACTCCTCAACAAGTCATTGGG
TGGCGTATTTTGACCCCCGT-AAGCTTTACAGAAAGAATCGATCTTCTTCTTCTTTTCTTGTTTTTTTTAATAGTTTGGA
TTGCTTACCACATGTGTCAGGTGGTTCTTTTCTTGTTGTTGAGGGCGAAA-----GAATTGAATCTCTGTGCAAACTAGT
ACGTAGTAGAAAATAGAGAACTGCTATACAGACGACATTCACAGACGATTTCAGCACGACACTCCATCTCACACCATTCA
TTCAAGACACCAATGTACAGAAAGTTGTTGGATTTGAAATCGGCTCAGGATCGTGCAAGCAAATATCGTCTGTGAAGTAG
TTTCGTAGAAAATACAGTGCATTTTGCTTCCTTGTTG-TAGATGGGGGGTGGTCAATTAAAGCAGCGGTGGGACGC----
-----------------------------ACCAACCGGTCGAGAGACATGGGA---------------GGTGGCAGGCAA
GGAGATCTC-------TCCGCCGCTTTAAATTCCCGTCCTTCCTCGTCAAACTCCCAATTGGACGGACAGACAGACGGTG
GCCGATCACCGACGGAGCATCGCATTCCGTCCGTCCGTCCGTCCTAGGCTCATGTTCATGTAGGTCCTAGCCCGGGGGAT
CGCGGGGCCT---GTGGAACGTGCGTCAGTTGCGCGCGCCAACGACCGGCGGGGAATATGGTCCACGCTCGGCCGCGTAA
CCATGTGTGT------------GTGTTTATGATGGTTTTGGTGCGTAAAGCGGCCCGAGTTAAATAAAGGGGGCAAAGCC
AAGCTGCGGTTGCTTGTCCAATGGAAAGATGGTTTTCCCTTTTAATTATGTTTAAAAAAAA-CTGGCGGCTGTTGCTCAG
CTTCTTTCTTTCTTTCCGAGCTACAGCTAGTACTGTGGTTGGCTTTATAGGAAGACAGCACGTGTGGCACGCCCCTGACC
ATGGTTTCCAGCATGTCTAGCACCT-AGGCATTGTCATAGGCGCCGGCATCCTTCGAAACGATGAAAACGAAGCGAAAAC
TTTTTGTTTTTCCGGCAGAAAAATAGAAACGGAGAGAAAAGGGGGAAATGAAAGCGCAGCTCGCAAACCAGAAACGGAAA
TGAAACACTCAGCTTCATTTCCAAGTTTTAATATAACTTAATATTTTAATCTCTACAACATAACTTAATATTTTAATGCC
TTCCAAGTTTTGGTGTTGCCAAAGTTCAGTGATACTTTGTTGGTTTCATTCTGTGTTTTTCTAC
>chr2B_1
TATGTATTATTTTCTTCCTTATTTGTGCAATGTGAAGATTATATGATCAATATCAATAACTACCATTGTTTAC---TTTC
CTTACCTATCATCATCCATTAATTAT---GTGTTATTTTCTTCCTTATTTTTCTAAGGTGTAGATTATATGATCAGTATC
AATAATT-ACCATTGTT---ACATTTCCTTATTATCACCAGCCATTAATTTTGTATTA---TTTTTCCTTATTTGAACGA
GGTGAATATTATATGATCAATATCAATAATTACCACGGTTATTTGCTTACGTACCCTCAAGGCCTCAACCATTGGTTACA
CAATATTATCTTCCTTATATGTACC---AGGTGAAGATTATATGATCAATATCATCAATTACCATTGTTATTTACTTATT
TAGCATCATCTACTAATTACATATTATTTTCTTCCATACTTGTACGTACTAGGTGAAGATTATA-TGATCAATGTCATTA
ATTATTAAAAATTGAAAAAAAGATCCTCATATAAAAATGC-CAAACAAAAAATTGCAGGG-AAATCGTAAACAAGATTGA
CCATTGCTTCCTCCGTTCACAAATACTCCATCCGTTCCGATTTACTCGTCGTGGTTTTACTAAAACCATGACGAGTAAAT
CGGAACGGATATTCTAACTTTTTC-TGAATTGAATGTATATAGACATATTTTAATGTGTTTATTCGCTCATTTTAGTCCG
TGTGTAGATCATATTAAAATGTCCAAAAGATTTTATATTTATGAACGGAGGGAGTACATTGTTCTAAAG---AAGTACAA
TAGAAATGATGCAAAGGCTGACCAAGGATTTCCTATATATATTATCCTGAACTCACACCAACTGTCCAACATAATCTGAG
GGTTTCAGTAGACCAACTAAAATCCAATAGTTTTATCGGCATCGGCATCGGCATCGTCTTTTTTACAATTTTTGCGTGTG
G-GAAGCAGTGGGAAACTCCAGCACTCGTGCCATCGACCGCACTCCATTTACATCCTTTTTAAAACCGTGGGTGCGCGCT
ATAAATACCAAGGGTCTCCGTCCACCTCGCCGCCGGAGACAACCACCAAACCCACGCATCCCC--------TCCCCTCCT
CCTTCCACAGCGAGCGCGGCGCCGATGGCCACGGCACACTGTTACCCGCCGCCG---CCGCCCATCGCCCACGCGCTTCC
AAGGCCGCACGCCGCCGACAGCGCCGTCGCCCTCCTCCCCGACGACGGCGGCAGCGACAGCGAGAGCGTGGCGGAGTCGT
CGTGCCCGCACCCGC------GCCGGCCGACGGCGAGCGGGGACGAGGAGGAGGAGGAGGAGGACGGGTGCA---GCGGC
AGCTGCGTGGAGGCGGACGAGTACTGGGG---GTACTACCAGCAGCAGC------AGCATCCGCAGGAAGCCGACGAAGA
GGAGGAGGTCAGCACGGCGAGCGTCTGGTGGAAGAAGAAACGGGCGGCGGCGGCGGCTGGTAGGGCCGGCGGCGCGTTCC
CCTCGGCGGTGGGG------------CGTGAGGGGGAGGAGAAGAAGGCGGAGGACCCGAAGCGGGCGGCGGCGCGGCAG
GAGGAGGACCGCAAGTTCTGGGCGGACTGCCTCGCCACAGGGTACCCATGAACGGACCCCGGGGGAAGCCATAGCTCGGC
ATGCAAAGGCCATGGCAAA-AAGCCATGAGCGCCGCTAACCGAAACTGCAGCCCG---ACCCAAGCGTATGTCTACCTT-
-----TTTTTTTG---------TTTCTTTTCTTTGTACAGA------ATATTC-----AACTCCTCAACAAGTCATTGGG
TGGCGTATTTTGACCCCCGC-AAGCTTTACAGAAAGAATTGATCTTCTCTTTAG--------------------------
--------------------------------TTGTTGTTGAGGGTGAAA-----GGATTGAATTTCTGTGCAAACCTAG
TA-A----------------------------------------------------------------------------
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----GTAGAAAACACTGTGCATTTTTGTTCCTTGTTT-TAGATGGGGGGTGGTCAATTAAAGCAGCGGTGGGACGCCAAA
GCCAGTGGCCAATGGCATTGCCGGCGGCCACCAACCGGTGGAGAGACATGGGACATGGGTGCAGGAGAGGTGGCAGGCAA
GGAGATCTC-------TCGTCCGCTTTAAATTCCCGCCCTTCCTCGTCAAACTCCCAATTGGACAGACAGAC----GGTG
GCCGATCACCGACGGAGCATCGCATTCCGTCCGTCCGTGCGTCCTAGGCTCATGTTCATGTAGGTCCTAGCCCGG---AT
CGCGGGGCCT---GTGGAACGTGCGTCAGTTGCGCGCGCCAACGACCGGTGGCGAGTATGGTCCAAGCTCGGCCGCGTAA
CCA----TGT------------GTGTTTATGATGGGTTTGGTGCGTAAAGCGGCCAGAGTTATTTAAAGGGGGCAAAGCC
AAGCTGCGGTTGCTTGTCCAATGGAAAGATGGTTTTCCCTTTTAATTATGTTATAAACCGGTGGCTTCT-----------
-TTCTTTCTTTCTTTCCGAGCTACAGCTAGTACTGTAGTTGGC-TTATACAAAGACAGCACGTGTGGCACGCCCTTGACC
ATGTTTTCCAGAATGCCTAGCACCG-AGGCATTGTCATAGGTGCCGGCTTCC----------------------------
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>chr2A_2
-ATGTATTTTTTTCTTCCTTATTTGTACAAAGTGAAGAGTATATGATTAATATCAATAATTACCATTGTTGTA----TTT
CGTTCTTATCACCATCCATTAATTAAGTAGTATTATTTTCTTCCTTGTTTTTCTAAGGTGTAGATTATATGATCAGTATC
AATAATTTACCATTGTC---ATATTTCCTTACTTACCCTCAACCATTGACTACACAATATTTTCTTCCTTATATGTAGTA
GGTGGAGATTATATGATCAATATCAATAATTACCAAGGTTATTTGCTTACTTACCC--------TCAACCATTGATTACA
CAATATTTTTTTCCTTATATGTACTGGT---TGAAGATTATATGATCAATATCACTAATTACCATTGTTATTTACTTACC
TACCACCATCTAGTAATTACATATTATTTTCTTCTATACTTGTACGTACTAGGTGAAGATTATACTGATCGATGTCATTA
ATTATTAAAATTTGAAAAGT--ATCCTCATATAAAAATTGGCAAACAAAAAATTTGGGGCAAAATGGTAAACAAAATTGA
CTACTGCTCCCCAC-TTCACAAATATAAGAT-------------------------------------------------
--------ATATTCTAACTTTTTCCTGAATCAGATGTATATAGACATATTTTAATATGTTTGCTTACTCATTTTAATCCG
TTTGTAGATCATATTAAAATGTCCAAAAGATCTCATATTTGTGGACGGAGGAAGTACATCATTCTAG--AAAAAGTACAA
TAGAAATGATGCAAAGGCTGACCAAGGATTTCCTACATATATTATCCTGAACTCACACCAACTGTCCAACATAATCCGAG
GGTTTCAGTAGACCAACTAAAACCCAATAGTTT-ATCGGCATGGGCATCGTCGTCGTCTTTTTTCCAATTTTTGCGTGTG
GCGAAGCAGTGGGAAGCTCTAGCACTCGTGCCATCGACCGCACTCCATTCATACCCTTTTAAAAACCGTGGGTGCGCGCT
ATAAATACCAAGGGTCTCCGTCCACCTCGCCGCCGGAGACAACCACCAAACCCACGCATCCCCAGCTCCCCTCGCCTCCT
CTTTCCACAG----CGCGGCGCCGATGGCCACGGCACACTGCTACCCGCCGCCG---CCGCCCATCGCCCACGCGCTTCC
AAGGCCGCACGCCGCCGACGGCGCCGTTGCCCTCCTCCCCGACGACGGCGGCAGCGACAGCGAGAGCGTGGCCGAGTCGT
CGTGCCCGCACCCGCGCGTGCGCCGGCCGACGGCGAGCCGGGACGAGGAGGAGGAGGAGGA---CAACGACGGGTGCAGC
AGCTGCGTGGAGGTGGACGAGTACTGGGG---CTACTACCAGCAGCAGCAACAGCAGCATCCGCAGGAAGCCGACGACGA
GGAGGAGGTCAGCACGTTGAGCGTCTGGTGGAAGAAGAAACGGGCGGCGGCGGCGGCTAGTAGGGCTGGCGGCGCGTTCC
CCTCGGCGTTCCCCTCGGCGGTGGGTGGTGAGGGGGAGGAGAAGAAGGCGGAGGACCCGAAGCGGGCGGCGGCGCGGCAG
GAGGAGGACCGCAAGTTCTGGGCCGACTGCCTCGCCACCGGGTACCCCTGAAACCCAGGAA----AAGCCATAGGTCGGC
ATGCAAAGGCCATGGCAAAGAAGCCATGAGCGCCGCCAACCGAAACTGCAGCCGCTCAACCCAAGCGTATGCCTACCTTT
GTTTGTTTCTTTCCATTTTTCTTTTGATTTCCTTGTACATA------ATATTCAACGGAACTCCTCAACAAGCCACTGGG
TGGCGTATTTTGACCCCCGTAAAGCTCTACAGAAAGACTCGATCTTCTTCTTCTTTTCTTGTC-----------------
-------------------------------------GTTGCGGGTGAAAGAATTGAATTGAATCTCCGTGCAAACTAGT
ACTA----------------------------------------------------------------------------
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----CTAGAAAATACATTTTTCTTTTCTTAGCTTGGTCTAGATGGGGGGTGGTCAATTAAAGCAGCGGCGGGACGCCAGG
GCCAG-------TGGCATTGCCGGCGGCCACCAACCGGTGGAGGGGCATGGGTGC------CAGGAGAGGTGGCAGGCAA
GGAGATCTCCTCCGCCTCCGCCGCTTTAAATCCCCGTCCTTCCTCGTCAAACTCCCAATTGGACACACGCAC----GGCG
GCCGATCACCGACGGGGCATGGCATTCCGTCCGT--------CCTAGGCTCATGCA---GTAGGTCCTAGCCCGG---AT
CGCGGGGCCTCCGGTGGAACGTGCGCCGGTTGCGCGCGCCAACGACCGGCGGGGAATATGGTCCACGCTCGGCCGCGTAA
CCA----TGTGTGTGTGTGTGTGTGTTTATGATGGGTTTGGTGCGTAAAGCGGCCGGGGTTAAATAAGGGGGGCAAGGCC
AAGCTGCTGTTGCTTCTCCTTGAGAAAGATGG-------TTTCAGTTATGTTTAAAAGAAAACTGGCGGCTGTTGCTCAG
CTTCTTTCTTTCTTTCCGAGCTACAGCTGGTACTGTAGTTGGCTTTATAGAAAGACAGCACGTGTGGCACGCAGCTGACC
ATGTTTTCTAGAAAGTCTAGCACCTAAGGCATTGTCATAGGTGCCGGCATCC----------------------------
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>SNPs
----------------S---S-------S-S---------S--------------------------------SSS----
--------------S----------S------------------------S-----------------------------
-----------------SSS----------S---------------------SS--------------------------
----------------------------------S----------------SSSS--S-S--------------------
-------------------------S----------------------S-------------------------------
-----------------------SS-------------S-S--------S------------------------------
-----------S------------S------------S---S---------S----S-------------SS--------
-----SS----------------SSS-SSSSSSS-SS-S-----------------------------------------
----------------------------S-----------------------------------------------S---
-SS-----S------S------S-----SS---------S---------S-------------SSS--S-----------
-----------------------------------------S--------------------------------------
------------------------------------S-------------------------------------------
------------------------------------------------------S------S--------------S---
------------------------S--------------------------------S----------------------
-----------------------------------S----S-------------SSS-----S---------S-------
--------------------S-----------------------------------------------------------
------------S--S-SS---------------S---------------------------------------------
-----------------------------SSS------------------------------------------------
---------------------------------------------S----------------------------S-----
-S---S-S-S-S--S-S----SSS--------------------------------------------------------
-----------------------------------------------------------------------------S--
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--------S--------------------------------SSSSSS---------------------------------
--------------------------------------------------------------SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S----------------------------------
--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS---------------------S----------S-------------------------------------------
---------------------------------------S----------------------------------------
----------------------------------------------------------------S-------SSSS----
--------------------------------------S------------------------------------SSS--
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---SSSS----------------------------S-------------------S------------------------
---------------------------------------------------------S----------------------
------------------------------------S-------------S-----------------------------
---S-------S-----------------------------S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1037
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---------------------------------------------------------TTTAGAAACCGTGGGTGCGT---
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>reverse_2054
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-----------------------------------------------------GCACGACACTCCATCTCACA-------
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