>input_sequence_66231
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--------------------------------------------------------------------------ATGTTC
CTCCACCACCTCTTGGTGCAAAACATGGCCAAGAACACACACCAACCAAGGTACACGCACCCTCTCATGTCCCATCTCCC
ATGTCCC--------------CGCGCGCGCGCTCATGTTTTGTTGTTGTGATAATTCTGGAGGTTCGTGTCGGCTGACGT
GAGTGATGGCTTGCATGCAGATCGAAAGACGGCGGCGGCGCGGCCAGAGCGAGGGGCCTGTCCAAGAAGTCGCCGTGGTA
CCAGCGCGCGGTGGAGCTGCTGCTCCTCATCTGGAAGCAGCCGGCGGGGGCGCCGACGACGACCAAGGCGGCCGCGGCGG
CGGGGGTGTCGGCCACCGGCAAGGCTGCGGCGGCC------CCGGCCGGCCCGGGGAGGCTGCGCAAGTCGTCGTCGCTG
AACGTGGCGGCGTCCTTCACGCGCGTCTGCCTCTGCGCGCCCATCTCCTCCTACAACGAGCCGTCGCTCTACTTCCAGCC
GGGCGACGTGGCGCCGCGCCGCAGCTACAGCTACCCGCGCGCGTCGTCGTCGTCGGCGTCCGGGTGCGGCGCGAACGCGA
ACGCCAACCCGCTGGTGGCCCCGCCGCCGGGCGCCGAGCCGCACCGCGGGGCGTCGGGCGGCGGGGAGGCCGCGCGGCGG
CCGGTGTTCCGCGGCAAGTCGCTGACGGACGACCACCTGATGCGGCGGTTCGTGGTGGACGAGGGCGCCACGCGGCGGCG
CAACCAGATGGAGGTGATCCGGCGGCGGCACGCCACGGCGGCCAAGCGCCGGCGCCTGGGCCCCAGCCCGCTCCGCCGGA
TGGTGCTGGCGGAGTCGGAGTCGGAGGGCGAGGACGAGGCGGTGGCGGAGACGCAACAGCGGGAGCGGAAGCGGG-----
-------CGGAGCCCCGGTCGTCGGTAGCGTAG-----------------------------------------------
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>chr2D_1_TraesCS2D01G350500
GCGGCGCCATGCTGGAACCGGCGCGGATGGGTGTTGCAAGCTCCAGGGAGCGTTGTTCTCAAGCGCGGGATGTGGTTATG
CAAGGGTCGACGACTGGCAGTGAGATGGTGGTGCTTCGTGGTCAGGGCGTATCACGGGTTCTGCCCGGGCAAGGGGGCGA
TGGTGCTCGTTGCGGCTCTCCTCTCCCTGTATGAGTTGATGCGACCGACCTAGGTGGGTGGGTTTCGACCGGCGCCTAGT
GGTACCCAAAAAGAATCAGTGTGTCTTGTTGCTTTGTGAAGTTGTCATGAAACCAAATCTGGACGAAATATTTAACATTA
ATCTTAATATAGTTATGTGTTTCCTTAATTCGCCTTCGAGGTTTAAGGGCACCATAATCTGTTTCCTAATTTGTAGAAGT
AAAAGGCACCTTAAAAATAGCCCCTCGCCTTAAAAAATAGGCATCAACGTATCAGGCACCCTCAGGCATGATGTCCAGGA
CACTGTCAAAACTGAACTTAA-GTAATACTCCTACCAGCCATTGGACCTGAAGTTAAAAATTGACGGCTCCTGCCGACTT
GGTGGACAGGGTACATCAATCGTATGTATGTTCTGCACTGCACACACACTTTTCAGCGTGACGTTACATAGCACCATCAT
CAAATCTTCAGTAGCAATTCACTTCCGTTCCCCACCACAGGCCCAGGCCCCAGAGTACATATACTGCTTGATCAGCTGGG
TCTCCCCGTTCCGTAGTTAAGTTTTGGAA-----------------------------ATGGTCCCCAGAAAAAAAGCCT
TATTCCCTCCAGAGAACTTTGACATGCTCCTGCGGTGTACTGCTCCAAGTGCAACCCAGAGCAACAAGACCAAACTGCCC
CTCGTCTCCAGGCCTTAACTTAACTAACTCCAGCCCCGGT----GCATGACCATGGATCCTCTCACTCGCATCGCATGCC
AGTAGGGAATGTGACAGCCTGATGTGACCTCAGTTCAACTCCTCACCGCCTTCTCCCCGCGCGCGCCGGCCCAGATGTTC
CTCCACCACCTCTTGGTGCAAAACATGGCCAAGAACACACACCAACCAAGGTACACGCACCCTCTCATGTCCCATCTCCC
ATGTCCC--------------CGCGCGCGCGCTCATGTTTTGTTGTTGTGATAATTCTGGAGGTTCGTGTCGGCTGACGT
GAGTGATGGCTTGCATGCAGATCGAAAGACGGCGGCGGCGCGGCCAGAGCGAGGGGCCTGTCCAAGAAGTCGCCGTGGTA
CCAGCGCGCGGTGGAGCTGCTGCTCCTCATCTGGAAGCAGCCGGCGGGGGCGCCGACGACGACCAAGGCGGCCGCGGCGG
CGGGGGTGTCGGCCACCGGCAAGGCTGCGGCGGCC------CCGGCCGGCCCGGGGAGGCTGCGCAAGTCGTCGTCGCTG
AACGTGGCGGCGTCCTTCACGCGCGTCTGCCTCTGCGCGCCCATCTCCTCCTACAACGAGCCGTCGCTCTACTTCCAGCC
GGGCGACGTGGCGCCGCGCCGCAGCTACAGCTACCCGCGCGCGTCGTCGTCGTCGGCGTCCGGGTGCGGCGCGAACGCGA
ACGCCAACCCGCTGGTGGCCCCGCCGCCGGGCGCCGAGCCGCACCGCGGGGCGTCGGGCGGCGGGGAGGCCGCGCGGCGG
CCGGTGTTCCGCGGCAAGTCGCTGACGGACGACCACCTGATGCGGCGGTTCGTGGTGGACGAGGGCGCCACGCGGCGGCG
CAACCAGATGGAGGTGATCCGGCGGCGGCACGCCACGGCGGCCAAGCGCCGGCGCCTGGGCCCCAGCCCGCTCCGCCGGA
TGGTGCTGGCGGAGTCGGAGTCGGAGGGCGAGGACGAGGCGGTGGCGGAGACGCAACAGCGGGAGCGGAAGCGGGCGGAG
CCCCGGTCG------------TCGGTAGCGTAGCACTGGCGTGGCGTGAAGCTTCCTTCCCCTGCTTGCTTCCCGTTCAC
TCACTCACTCACTCACTCACTCACTCACTCACCCCTCGTCGTTTTTCCTTTGTTCTCTCTCACT----TGTGTTGTTGTC
GATATCATGTCACGCATGAACAAATTTGAGCAGCCATCCAGTGCGATGTTTTTACTGGT-------ACGTTCGGTGGATT
-GTGTCCTTTGCTGTGCGTGTTTCAGCTTCTGATTCTGCATCTTGCTTTTGCTGCGTGCCATTTCGCTCTGGCCCG----
-GCC-----GCCGGCAAAGTGAAAGTGCTGTGGTAGGTACCGAACGAATGGCCGAGCAAGAGCAACCGACGCAACTGCTA
ACGCCCGCGCAGGGCCCCGCGTGACGGCGAGGGAGCCAGAGCCTCCTCGGCCAG-------------------GCATTTA
ATCGGATCGGTGCAG--------TGGATGGAGGTAAATGCGCGTACGTGTGATCGGCATCAAGTATGAACAATCGGGAAG
ATACGAACCCTGCCTGCCGTTGGGCACTGCAGACGTACTACGAGCAGCCCAATTAAGGACCAGACGTTGAGAAC-----C
CGATGGTGCCCGCCCGCCG-----------------------GCCGCGCGCGCTCCCGGCGTGCCTTGCT-GGCGAGAGC
TGGCGAACGGGCTCATCATGCGCA--------------CTCGGGAGCGCGCACGCCAGCGTCGAAACGACCATTTCGAGG
G------------------------CAGATCGTGTGCTGGACGGGCAGCTGAGGCGCTGCCGTGTATCG----GGAAGGA
AGGTTCGGCCGACCCGTCGCAATCACCACATTCTCGAGAGCGAGTTATATGCCTGGTGTGTGGTGCGCTTGGGCAGGCGA
CGGCGGCTAGAATATGAAGAATATTGGCGTGCAGACGGCCCTGCGGGAAAGCAAGAACTAGTACAGCTCTACACGCCGCG
AATAAC---ATAGCATAATCTGAACCAATCTGCCTCATTAAACTAAAGGTTTGTGGTACGA-------GTAGGCGTGCAT
GATTGATGTTCCTTGCCCTTCTTTTCGGCTGGAAAAGCAGACG
>chr2A_160
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------A
TGGTGCTCGTTGCTACTCTCCTCTCCCTGTATGAGTTGATGCGACCGACCTGGGTGGCTGGGTTTCGACCGGCGCCTAGC
GGTGACCAAAATAAATCAGCGCATCTTGTTGCTTTGTCAAATTGTGATGAAACCAAATCTGGAAGAAATATATAACATCA
ATCTTTA-ATAGTTATGTGTTTCCTTAATTCGCCTTTGAGGTTTAAGGGCGCTATAATCTGTTTCCTAAATTGCAGAAGT
GAAAGGCACCTTAAAAATAGCCCCTCACCTTAAAT-ATAGGCATCAGCGTATCAGGCACCCTCAGGCATGATGTCCACGA
CACTGTCAAATCTGAACGTAA-GTAACACTCCTACCAGCCATTGGACCTTAAGTTAAAAATTGACGGCTCATGCGGACTT
GGTGAACAGGGTACATCACTCGTATGTATGTTTTGCATTGCACACAAACTTTTCAGTGTGACGTTACATAGCACCATCAT
CAAATCTTCAGTGGTAATTCAGTTCCCTGCCCCACCACAGGCCCAGAGTACATA---------------------CTGGG
TCTTCCTGTTCCGGAGTTAAGTTTTGGTATGGTCACCCTCAAAAAACAAAGTTTTGGAATGGTCCCCTG-AAAAAAGCCT
TATTCCCTCCAGAGAACTTCGACATGCTCCTGCGGTGTACTGCTCCAAGTGCAGCCCGGAGCAACGAGACCAAACTGCCC
CTCGTCTCCAGGCCTTAACTTAACTAACTCCAGCCCCAGTGCTCGCATGACCATGGATCCTCTCACTCGCATCGCATGCC
AGTAGGGAATGTGACAGCCTGATGTGACCTCGGTTCAACTCCTCACCGCCTTCTCCCCGCGCGCGCCGGCCCAGATGTTC
CTCCACCACCTCTTGCTGCAAAACATGGCCAAGAACACACACCAACCAAGGTACGCACCCCCTCCCATGTCCCATCGATC
CTGTGAGCCAGCTCGCGTGTGTGCGCGCGCGCTCATGTTTTG--------ATAATTTTGGA-GTTGGTGTCGGCTGAC--
--GTGATGGCTTGCATGCAGATCGAAAGACGG------------CAGAGCGAGAGGCCTGTCCAAGAAGTCGCCGTGGTA
CCAGCGCGCGGTGGAGCTGCTGCTCCTCATCTGGAAGCAGCCGGCGGGGGCGCCGACGACGACGAAGGCGGCCGCGGCGG
CGGGGGTGTCGGCCACCGGCAAGGCTGCGGCGGCGGCGGCGCCGGCCGGGCCGGGGAGGCTGCGCAAGTCGTCGTCGCTG
AACGTGGCGGCGTCGTTCACGCGCGTCTGCCTCTGCGCGCCCATCTCCTCCTACAACGAGCCGTCGCTCTACTTCCAGCC
GGGCGACGTGGCGCCGCGCCGCAGCTACAGCTACCCGCGCGCGTCGTCGGCGTCGGCGTCCGGGTGCGGCGCGAACGCCA
ACGCCAGCCCGCTGGTGGCCCCGCCGCCGGGCGCCGAGCCGCACCGCGGGGCGTCGGGTGGCGGGGAGGCCGCGCGGCGG
CCGGTGTTCCGCGGCAAGTCGCTGACGGACGACCACCTGATGCGGCGGTTCGTGGTGGACGAGGGCGCCACGCGGCGGCG
GAACCAGATGGAGGTGATCCGGCGGCGGCACGCCACGGCGGCCAAGCGCCGGCGCCTGGGCCCCAGCCCGCTCCGCCGGA
TGGTGCTGGCGGAGTCGGAGTCGGAGGGCGACGACGAGGCGGTGGCGGAGACGCAACAGCGGGAGCGGAAGCGGG-----
-------CG------------TCGGTAGCGTAGCACCGGCGTGGCGTGAAGCTTCCTTCCCCTGCTCGCTTCCCGTTCAC
TCACTCACTCACTCAC----------------CCCTCGTCGCTTTCCTTTTGTTCTCTCTCACTCACTTGTGTTGTTGTC
GATATCATGTCACGCATGAACAATTTTGAGCA----------GCGATGTTTTTACTGGTGCACGCGACGTTTGGTGCATT
CGTGTCCTTTGCTGTGTGTGTTTCTGCTTCTGATTCTGCATCTCGCTTTTGCTGCGTGCCATTTCGCTCTGGCCCG----
-GCCCGGCCGCCGGCAAAGTGAAAGCGCTGTGGTAGATACCGGACGAACGGCCGAGCAAGAGCAACCGACGCAACGGCTA
ACGCCCGCGCAGGGCCCCGCGTGACGGCGAGGGAGC---------------CAG-------------------GCATTTA
ATCGGATCGGTTCAG--------TGGATGGAGGTAAATGCGCGTACGTGTGATCGGCATCAAGTATGAACAACCGGGAGG
ATACGAACCCTGCCTGCCGTTGGGCGCCGCAGACGTGCTACGAGCAGCCCAATTAAGGACCGAACGTTCAGAACGAGACC
GGACAGCGCCCGCCGGCCGGCCGGCGGTCAAAACCCCGACGCGCCGCGCGCGCTCCCGGCGTGCCTTGCCCGGCGAGAGC
TCGCGAACTGGCCCGTCATGCAAATGCAGTGCGCGCATCTCGGGAGCGCGCGCGCCACCGTCGAAACGGCCATTTCGAGG
AA-------------------AGATCAGATCGTGAGCTGGGCCGGCAGCTGAGGCGCTGCCGTGTATCGGCAAGGAAGGA
AGGTTCGGCCGACCCGTCGCAATCACCACATTCTCGAGAGCGAGTTATATGCC-GGTGTGTGGTACGCTTGGGCAGGCGC
GAGGCGGCTAC--------AATATTGGCGTGCAA----------------------------ACAGCTCTACACGCCGCG
AATAAC---ATAGCATAATCTGAACCAATCTGCCTCACTAAACAAAAGGATTGTGGTACGAGTAGGCTGTAGGCGTGCAT
GATTGATGTTCCTTGCCCCTCTTTTCGGCTGGAAAAGCAGAC-
>chr2B_264
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-----------------------TCTTGTTGCCTTGTGAAGTTGTGATGAAACCAAATT----CGAAAGAAATAACATTG
ATC-TTA-ATAGTTATGTGTTTCCTTAATTCGCCTTCGATATTTAAGGTCACTATAATCTGTTTCCTAATTTGTAGTAGT
AAGAGGCACACTAAAAATAGCCCCTCGCCTTAAAA-ATAGGCATCGACGTATCAGGCACCCTCAGGCATGATGTCCACGA
CACTATCAAAGCTGAACTTAAGGTAACACTCCTACGAGCCATTGGACCTTAA-----AAATCGACGGCTCATGCCGACTT
GGTGGGCAGACTACATCAATCGTATGTATGTTTTGCACTGCACACACACTTTTCAGCGTGACGTTACATAGCACCATCAT
CAAATCTTCGGTAGCAATTCAGTTCCGTTCCCCACCACAGGCCCAGGCCCCAGAGTACATATATTGCTTGATCAGCTGGG
TCTTCCCGTTCCGTAGTTAAGTTTTGGAATGGTCCCCC--------------------------------AAAAAAGCCA
TATTCCCTCCAGAGAACTTTGACATGCTCCTGCTGTGTACTGCTCCAAGTGCAACCCAGAGCAACGAGACCAAACTACCC
CTCGTCTCCAGGCCTTAACTTAACTAACTCCAGCCCCGGT----GCATGACCATGGATCCTCTCACTCGCATCGCATGCC
AGTAGGGAATGTGACAGCCTGATGTGACCTCAGTTCAAGTCCTCGCCGTCTTCCCCCCGCGCGCGCCGGCCCAGATGTTC
CTCCACCACCTCTTGGTGCAAAACATGGCCAAGAACACACACCAACCAAGGTACACACACCCTCCCATGTCCCATCGATC
CTGTGAGCTAGCTCGCGTGTGCGCGCGCGCGCTCATGTTTCGTTGTTGTGATAATTCTGGAGGTTCGTGTCGACTGACAT
GAGTGATGTCTTGCATGCAGATCGAAAGACGGCGGCGGCGCGGCCAGAGCGAGAGGCCTGTCCAAGAAGTCGCCGTGGTA
CCAGCGCGCGGTGGAGCTGCTGCTCCTCATCTGGAAGCAGCCGGCGGGTGCGCCGACGACGACGAAGGCGGCCGCGGCGG
CGGGGGTGTCGGCCACCGGCAAGGCTGCGGCGCCGGCT------GCCGGGCCGGGGAGGCTGCGCAAGTCGTCGTCGCTG
AACGTGGCGGCGTCGTTCACGCGCGTCTGCCTCTGCGCACCCATCTCCTCCTACAACGAGCCGTCGCTCTACTTCCAGCC
GGGCGACGTGGCGCCGCGCCGGAGCTACAGCTACCCGCGCGCGTCGTCGGCGTCGGCGTCCGGGTGCGGCGCGAACGCCA
ACGTCAACCCGCTGGTGGCCCCGCCGCCGGGCGCCGAGCCGCACCGCGGGGCGTCGGGTGGCGGGGAGGGCGCGAGGCGG
CCGGTGTTCCGCGGCAAGTCGCTGACGGACGACCACCTGATGCGGCGGTTCGTGGTGGACGAGGGCGCCACGCGGCGGCG
GAACCAGATGGAGGTGATCCGGCGGCGGCACGCCACGGCGGCCAAGCGCCGGCGCCTGGGCCCCAGCCCGCTACGCCGCA
TGGTCCTGGCGGAGTCGGAGTCGGAGGGCGACGACGAGCCGGTGGCGGAGACGCAACAACGGGAGCGGAAGCGGG-----
-------CGGAGCCCCGATCGTCGGTAGCGTAGCACTGGCGTGGCGTGAAGCTTCCTTCCCCTGTTTGCTTCCCGTTCAC
TCACTT--------AC----------------CCCTCGTCGTTTTTCTTTTGTTCTCTCTCACT----TGTGTTGTTGTC
GATATCATGTCACGCATGAACAAATTTGAGCAGCCATCCAGTGCGATGTTTTTACTAGT-------ACGTTTGGTGGATT
-GTGTCCTTTGCTGTGTGTGTTTCTGCTTCTGATTCTGCATCTTGCTTTTGCTGCGTGCCATTTCGCTCTGGCCTGGCCT
AGCCCGGCCGGCGGCAAAGTGAAAGTGCTGTGGTAGGTAC----CGAACGGCCGGGCAAGAGCAACCGACGCAACGGCTA
ACCCCCGCGCAGGGCCCCGCGTGACGGCGAGGGAGC---------------CAGCCGGAGCCTCCTCGGCTAAGCATTTA
CTCGGATCGGTTCAGACGTTCAGTGGATGGAGGTAAATGCGCGTACGTGTGATCGGCATCAAGTATGAACAACCC-----
ATACGAACCCCGCCTGCCGTTGGGCA-CGCAGACGTACTACGAGCAGCCCAATTAAGGAACGTTCAGA---------ACC
CGACAGTGCCCGCCGGCCGGCCGGTGGTCAAAACACCGGCGCGTCGCGCGTGCTCCCAGCGTGCCTTGCCCGGCGAGAGC
TCGCGAACGGGCTCGTCATGCAAATGCAGTGCGCGCCCGTCGGGCGCGCGCACGGCAGCGTCGATACGGTCACTTCATTT
CGAGGGAAGAGGCAAGGGGGCAGATCAGATCGTGTGCTGGACAGGCAGCTGAGGCGCTGCCGTGTATCGGG-----AGGA
AGGTTCGGCCGACCCGTCGCAATCACCACATTCTCGAGAGCGAGTTATCTGCC-GGTGTGTGGTGCGCTTGGACAGGCGG
CGGCGGCTAGAATATGAAGAATATTGGCGTGCAGACGGCCCTGCGGGAAAGCAAGAACTACTACAGCTCTACACGCCGCG
AATAACAACATAGCATAATCTGAACCAATCTGCCTCCGTAAACAAAAGGTTTGTGGTACGA-------GTAGGCGTGCAT
GATTGATGTTCCTTGCTCTTCTTTTCGGCTGGAAAAGCACAC-
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
-------------SS------------------------------------S-----S---------------------S
---SS------SS------S-SS----------------------S-------------------------S--------
-----S-S--------------------------------------------S---------------------------
-----------------------------------S-----------------------------------------S--
----------S---------------S----------------------S--------------------S---------
--------------------------------S-----------------------------------------------
---------------------S-----------------------------------------S----------------
---S---------------------------------------------------------------S-S----------
-----------------------------------------------------------------S--------------
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--------------------------------------------------------S-------S-----------SSS-
S---SSS-----------------------------------------------------------------------S-
-----------------------------------------------------S--------------------------
---------------------------------------------------------------S----------------
----------------------------------S--------------S------------------------------
--------------S-----------------------------------------------------------------
-------------------------------------------------S----------------------------S-
----------------------------------------------------------S---------------------
--------------------------------------------------------------------------------
S-------------------------------------------------------------------------------
-------------------------------S-------------------------------------------SSSSS
SSSSSSS-------------------------------------------------------------------------
----------------SSSSSSSSSSSSSSSS---------------S--------------------------------
-----------------------------------------------------------------------S--------
----------------S-------S-------------------------------------------------------
------------------------------------------S-----S--------------------------S----
------------------------------------SSSSSSSSSSSSSSS-----------------------------
-----------S------------------------------------------------------------S-----S-
---------------------------S---------------------------------SS-----S-----------
---SS---------S------------------------------------------------------S----------
-S------------S------SS---------------------------------------------S-----------
S-----------------------------------------S-------------------------------------
-----------------------------------------------------S-------------------------S
------------------------------------------------------------S-------------------
-------------------------------------S-----S------------------------------------
------------------------------------------S
>forward_118
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------------------AGTGAGATGGTGGTGCTTCG------------------------------------------
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>reverse_1199
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------------------------------------------------------------------------------GT
GAGTGATGGCTTGCATGC--------------------------------------------------------------
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>forward_478
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----------------------------------------------------------CCCTCAGGCATGATGTCCAG--
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>reverse_2363
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------------------------------------------CTCCTCGGCCAGGCATTTAA------------------
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