>input_sequence_66229
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---------------------------ACCATCAGGCACTATAAATACCCAAGGCATGGCACATCACCGCCGCACCACAA
GAGCAACCAACCATCCAC----GACACACA------CAGCACGGCAGCGGCGTAAAGGGAAAACTCCGGCAAGATGTCTC
AGCTCGCCCGCGCTAGCCTGACTGCGGTGGCGATGCTCCTCCTCCTTGCCGCTGCTGCGGCGGCGGAGGGG---------
---------------------CCAGCAGGCTGCCAGGACGACGTTGTGGCGCTCAACGAGGCCTGCTACCAGTACGTGCA
GAAGGGCGCGCCGACGGTGCCGCCGTCGCAGGAGTGCTGCGACGCCGTGCGGCGCGTGGACGTGCCCTGCGTCTGCAGCT
ACCTGGGCAGCCCCGGCGTGAGGGACAACATCAGCATGGAGAAGGTGTTCTACGTCTCCCAGCAGTGCGGCGTCAGCATC
CCTGGCAACTGCGGAGGTGAGCCAGCTAGCTGCTTCACTTGCTCAAC----AGCCTGTACATGATTGAACTGAGACTGAC
ATGCTTACCCCGCCAAATTGCGCTAGTCCATTCAAACCTCAGGGAACTACATG--TATACCAGGATTACTATTCATCCAA
AAATGTCGTTCGAGTTCATTATTCTAAGTA----ACAGTTGAACCGATTTGTGTTTTGGGTT---TATTACAGGATCGAA
GGTCTGAAGCAGGAACAGGCCAGCTGAATGGCAAGCTTGGATAACGTAAGCAGCGCAGTTCGCACTGCTGGAATAAATAA
GACGTCCTGGTCAACTCATAGGT-GGACGATGCCGGAGCACAAGGAATGCATTGCCATTCAGTTGCTGGAAATATTTATA
ATATTGTACTTTGACTACGTTGCAACTTGTTGCAAGACTGTTGTATTGCCATTCAGTTGCTAAAATTATTATACTTTGAC
TACGTTGC------------------------------------------------------------------------
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>chr1B_1_TraesCS1B01G179600
TGCTACACATACGAAAGCTTACGTGAGGCTTTTAAGTAAAAGCTGATGTGGAGGTGGGTAATTGGGCCAGGATAGCAGAT
GGGGCCCACCCTGGTTAAATTAGGGGGG--GAGAGAATGTATGGAAGGTTAAGTAAACTTACATAGGACTTTTAGTAGGT
GTAGGATTATTGGGACAGAAGTCACCTCCAGGTACCGAACGTGAGTAAAAAAAAAATTGTACCATCTTAGATATACGAGA
CACCTTGCTTGGAGGATCCGAAGTGCATAAGGTGCAACTAACTAACTATCTAGATTGCTTCAGAGGCTCCGGATGGAATC
AATTTGGAGGTTCCGAACAGACGAATGTGAAGAGAGTTAGGACTTGGAATAATGAGAAATTTTGATGGGTTTTGGAGACT
GAACTTTGATCACATAGCAAGAAATACTTGTCACAAGACCCAAGACCCCCTTTAACAGTATCAGCATACCTACGACTCGA
AGTGATCATGCCAAAGCTTGATCCTTAGATTTCGAGGGGTCACAAACCATCTTCCAAACTCAACATCTTTTGGGACTATA
GCTGATCAACACTATGAGAAATTGTAAGTCCCTTTATTCAGTCTTGTTGTCATTATTCATCAAAACCCACTATGGGGTCC
TAGATGCACTTACAG-----------------------------------------------------------------
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-------------------------------------------------------CTTGACTACTTCCACGACCCCCGCG
ATTGCTTATCCTTTT---------------TCCCACTCAAATTGCGCAAATAAATAATGATATGGTTGAGGGCATGTCAA
CCATCCAAGACATCAATGCCGAAATTCATCCGGCATCCAAGCCTCTCTATCTGAAGTTCTGTTCAGACATGC--------
--ATGTCCTAGTCCTACAACAGACTCCACGACGCTGTCACACCTATTGCATTTGCATGCAAACACAAAGATTAAGCAAGC
ACGCACCGTGGAACCAGCTCACAAACATTGCATTTCCATGGCCGGTTCCCAGCCGAAGCACCAGCTCCCCCGCCAGCCAG
CCCACCAAACAAGCCAGACCCTCTAGAACCATCAGGCACTATAAATACCCAAGGCATGGCACATCACCGCCGCACCACAA
GAGCAACCAACCATCCAC----GACACACA------CAGCACGGCAGCGGCGTAAAGGGAAAACTCCGGCAAGATGTCTC
AGCTCGCCCGCGCTAGCCTGACTGCGGTGGCGATGCTCCTCCTCCTTGCCGCTGCTGCGGCGGCGGAGGGG---------
---------------------CCAGCAGGCTGCCAGGACGACGTTGTGGCGCTCAACGAGGCCTGCTACCAGTACGTGCA
GAAGGGCGCGCCGACGGTGCCGCCGTCGCAGGAGTGCTGCGACGCCGTGCGGCGCGTGGACGTGCCCTGCGTCTGCAGCT
ACCTGGGCAGCCCCGGCGTGAGGGACAACATCAGCATGGAGAAGGTGTTCTACGTCTCCCAGCAGTGCGGCGTCAGCATC
CCTGGCAACTGCGGAGGTGAGCCAGCTAGCTGCTTCACTTGCTCAAC----AGCCTGTACATGATTGAACTGAGACTGAC
ATGCTTACCCCGCCAAATTGCGCTAGTCCATTCAAACCTCAGGGAACTACATG--TATACCAGGATTACTATTCATCCAA
AAATGTCGTTCGAGTTCATTATTCTAAGTA----ACAGTTGAACCGATTTGTGTTTTGGGTT---TATTACAGGATCGAA
GGTCTGAAGCAGGAACAGGCCAGCTGAATGGCAAGCTTGGATAACGTAAGCAGCGCAGTTCGCACTGCTGGAATAAATAA
GACGTCCTGGTCAACTCATAGGT-GGACGATGCCGGAGCACAAGGAATGCATTGCCATTCAGTTGCTGGAAATATTTATA
ATATTGTACTTTGACTACGTTGCAACTTGTTGCAAGACTGTTGTATTGCCATTCAGTTGCTAAAATTATTATACTTTGAC
TACGTTGCAACTTCCCTGATAGAGTATTAC--------------------------------------------------
-------------------------------------------TATTATCTAAAGTTTACCGGTGAAGATAATTCTGGAT
GACTGAACTGAAACCAATCACATGTGCAGATTCATCAAAACAATTTAGATGCCAAAAACC--------------------
------------------------------------------------------------------------TACAAACA
TA-------TGCATACACAGAAGACAAAATGGCACTG----------------ATCAATCCCCAATCTCTCCCCTTCA--
--AGTAGTGGTATATCTTAGCAAGTAATTACATCACAACTCAGTGGTTCATGGGCGGCCTGGAAAAGAAGCAGCCCCCCA
GTGGAAGAACTATACAATTCGCCCTCCACGAATCA----CAAACTCATCCAGCCCAAAACACTGGACTCCGCAGCAGCA-
--CTCACAAACCTCTCTAGGACTAGCGCCGGCGTGTAAAATGCCGGCGCGTCTACACCGTCACCATCATCATAC------
-------ACTCACGAAAACTTGGAGGTGTTGAGCCTGCCCCACCATTTCCGCTTGGCCGAGTTGGGGGAGGACTCGTTGC
CGCCACCGCCACCGCCGCCGCTGGCGAGCTTGTTCAGGATCACCTTGGTCTCCCTGATGCGGGAGCCGAAGTCCTTCTTC
CACGAGTCGAAGTTCTGCTTCAGCCTGCGGAGCTCCACGTCCGGGTTCAGGCTCGCGTCCGCCTGCCCGGACTTGACCTC
CACCAGGAACTTGGCGTCGTCGGCGAAAACCTGGCTCCGCTGCTCCAGCTCCTCCGCCAGCCGCCCGATGACGCTCATGC
TGGCGTTCATCTCGCGCCCGGTGATCCGCGGCGCCGCGGCCAGCTGCTGGGAGGAGCCCCCGCCCACGTGGTTCCCGTTG
CTCTCCCAGCTCTGCTCCACGGACGAGTCCGACATCCGAGGCGTCTCGTCCAGGGCCAGGCTCTTCTTCGCCACCGACAG
GCTCGACTGCAGCGACCGCATCTGCTTCTGCCACATCTCCTCCATCGCCTTCATTTTCTGCTCGTATTCTAACCATCGGT
TCTCGTATTGCTGGAGCCGCTGGTGTAGCATCTCGTTCTC
>chr1D_6
-----CACGTACGAAAGCTTACATGAGGCTTTTAAGTAAAAGCTGATGTGGAGGTGGGTAATTGGGCTAGGATAGCAGAT
GGGGCCCACCCCGGTTAAATTAGGGGGGAGGAGGGAATGTATGGAAGGTTAAGTAAACTTACGTAGGACTTTTAGTAGGT
GTAGGATTATTGGGACACAAGTCACCTAGAGGTACCGAACATGAGTAGAAAGTTT-TTGTACCATCTCGGATATACGAGA
CACCTTGCTTGGAGGATCCGAAGTGCACAAAGTGCAACTAACTAACTCTCTAGATTGCTTCAGAGGCTCCGGATGGAATC
AACTTGGACGTTCCGAACAAATGAATGTGAAGAGAGTTAGGACTTGGAATAATGAGAAATTTTGATGGGTTTTGGAGACT
GAACTTTGATCACATAGCAAGAAGTACTTCTCACAAGACCCAAGACCCCCTTTCATAGTATCGGCATACCTATGACTCGA
AGTGATCATGCCAAAGCTTGATCCTTCGA-TTCGAGGGTTCACGAACCATCTTCCAAACTCAATATCTTTTGGGACTATA
GCTGATCAACA-TATGAGAAATTGTTAGTCCCTTTATTCAATCTTGTTGTCATGATTCATCAAAACCCACTATGGGGTCC
TAGATGCACTTACAGCTTGACTACTTACATGACCACCATGATTGCTTTTTTTTCCACTCAATTGCGTAAATAAATAATGG
TGGTTGAGGGCATGTAAACATGTATACGACTCGAAGTGATCATGCCAAAGCTTGATCCTTAGGTTTCGAGGGGTCACGGA
CCATCCTCCAAACTCAACAACTTTTGGGACTATACACTATAGCTGATCGACACTTTGAGAAATTTTAGTCCCTTTATTTA
GTCTTGTTGTCATAAATCATCAAAACCCACTATGGGGGCCGTGATGCACTTACAACTTGACTACTTCCACGG---CCGCA
ATTGCTTATCTTAAGGCTAAGCAAGATTTTTCCAC--CAAATTGTGCAAATAAATAATGATATGTTTGAGGGCATGTAA-
---------ACATCCATGCCGAAATTTATCTAGCATCCAAACCTCTCTATCTGAAGTTCTGTTCAGGTATGCGCCTATGC
GGACGGTCAGGGACTACAACAAACTCACCAACATTCTCACACCTATCGCATTTGCATGCAAA-ACAAAGATCAAGCAAGC
ACGCACCGTGGAACCAGCTCACAAGCATTGCATTTCCATGGCCGGTTCCCAGCCGAAGCACCAGCTCCCCCGCCAGCCCG
CCCACCAAACAAGTCAGATCCTCTAGAACCGTCAAGCACTATAAATACCCAAGGCATGGCACATCACCGCCGCACCACAA
GAGCAACCATCCACATCCACGAGACACACA------CAGCACAGCATCGGCGTAAAGGGAACACCA--GCAAGATGTCTC
AGCTCGCCCGCGCCAGCCTGACTGCGATGGCGATGCTCCTTCTCCTTGCCGCTGCTGCGGCGGCGGCGGGGCCGGCGGCC
GGCGGCGCGGCTGTGGCGGACCCAGCAGGCTGCCAGGACGACGTTGTGGCGCTCAACGAGGCCTGCTACAAGTACGTGCA
GAAGGGCGCGCCGACGGTGCCGCCGTCGCAGGAGTGCTGCGACGCCGTGAAGAGCGTGGACGTGCCCTGCGTCTGCAGCT
ACCTGGGCAGCCCCGGCGTGAGGGACAACATCAGCATGGAGAAGGTGTTCTACGTCTCCCAGCAGTGCGGCGTCAGCATC
CCTGGGAACTGCGGAGGTGAGCTAGCT-GCTGCTTCACTTGGTTAACTAACAGCCTGCACATGAATGAACTGAGACTGAG
ATGCTTACCCCACCAGAGT--GCTAGTACATTCAAACCTAAGAGAAATACGTAGATGTACTGGGTTTATTAGTCATCG--
--ATGCCGTTCGAGCTCATTATTGTAAATA----ATAATTGAGCTGG-TTATGTTTTGGGTTTACTATTACAGGATCGAA
GGTCTGAAGCAAGAACAGGCCGGCTGAATGGCAAGCTTGGATAATGTAAGCAGCGCAGTTAGCGCTGCTGAAATAAATAA
GACGTCCTGGTCAACTTATAGGT-G-ACGATGCCGGAGCACAGGGAATGTATTGCCATTCAGTTGCTGGAATTATTTACA
GTATTGTACTTTGACTACGTTGCAACCTGTTGCAAGA----TGTATTGCCATTCAGTTGCTAAAATTATTATACTTTGAC
TACGTTGCAACTTCCCTGATAG----------------------------------------------------------
-------------------------------------------TATTATCTAATCTTGAGCAGTGAAGAT-ATTCTGGAT
GACTGAACTGAAACCAATCACGTGTGCAGATTCATCAAAACAATTTACACCTGCTTGTGCAAAACAAACATGCAAGGCCA
T-ATATGCAAGTCCATATGCATGGATGAATAGATGCACACAGCCTACTTGGCTGCAGTTAAACTAAACCGCATACAAACA
TA-------TACATACACAAAAGACAAAATGGCACTAG-----------------CAATCCCCAATCTCTCCCCTTTTAA
GCAGTAGTAGTACATCTTAGCAAGTAATTACATCACAACTCAGTGGTTCATGGGCGGCCTGGAAAAGAAGCAGCCCCCCA
GTGGAAGAACTATACAACTCGCCCTCCACGAATCA----CATACTCATCCAGCCCAAAACACTGGACTCCGCAGCAGCAG
CACTCACAAACCTCTCTAGGACTAGCGCCGGCGTGTAAAATGCCGGCGCGTCTACACCATCACCATCATCATCAGACACC
ATAAGAAACTCACGAGAACTTGGAGGTGTTGAGCCTGCCCCACCACTTCCGCTTGGCCGAGTTGGGGGAGGACTCGTTGC
CGCC---GCCGCCGCCGCCGCTCGCGAGCTTGTTCAGGATCACCTTGGTCTCCCTGATGCGGGAGCCGAAGTCCTTCTTC
CACGAGTCGAAGTTCTGCTTCAGCCTGCGGAGCTCCACGTCCGGGTTCAGGCTCGCGTCCGCCTGCCCGGACTTGACCTC
CACCAGGAACTTGGCGTCGTCGGCGAACACCTGGCTCCGCTGCTCAAGCTCCTCCGCCAACCGCCCGATGACGCTCATGC
TGGCGTTCATCTCGCGCCCGGTGATCCGCGGCGCCGCCGCCAGCTGCTGGGAGGAGCCCCCACCGACGTGGTTCCCGTTG
CTCTCCCAGCTCTGCTCCACGGACGAGTCGGACATCCGAGGCGTCTCGTCCAGGGCCAGGCTCTTCTTGGCCACCGACAG
GCTCGACTGCAGCGACCGCATCTGCTTCTGCCACATCTCCTCCATCGCCTTCATTTTCTGCTCGTATTCTAGCCACCGGT
TCTCGTATTGCTGGAGCCGCTGGTGTAGCATCTCGTTCTC
>chr1A_113
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----------------------------------GAATGTATGAAAGGTTAAGTAAACTTACGTAAGACTCTTAGTAGGT
GTAGGATTATTGGGACAAAAGTCACCTGGAGGTACAGAACGTGAGTAGAAAGTTT-TTGTACCATCTTGGATATACGAGA
CACCTTGCTTGGGGGGTCTGAAACGCACAAAGTGCAACTAACTAACTTTGTAGATTGCATCAGAGGCTCCGGATGGAATC
AACTTGGAGGTTTCGAACAGATGAATGTGAAGAGAGTTAGGACTTGAAATAATGAGAAATTTTGATGGGTTTTGGAGACT
GAACTTTGATAACATATCAAGAAATACTTCTCACAAGACCCAAGACCCCCTTTGATAGAATTGGCATACCTATGACTCGA
AGTGATCATGCCAAAGCTTGATCCTTGTATTTCGAGGGGTCGCGAACCATCCTCCGAACTCAACATCTTTTGGGACTATA
ACTGATCAACACTTTGAGAAATTGTTAGTCCCTTTATTTAGTCTTGTTGTCATGATTCATCAAAACCCACAATGGGGTCC
TAGATGCACTTACAG-----------------------------------------------------------------
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-------------------------------------------------------TTTGACTACTTCTACGG---CCGCG
ATTGCTTATCTTTTC---------------TCCAC--TAAATTGTGCAAATAAATAATGATATGGTTGAGCCCACAT-AA
ACATCCAACGCATCCATGCCGAAATTCATCTAGCATCCAGGCCTCTCTATCTGAAGTTCTGTTCAGGCATGC--------
GGATGATCAGGGACTAGAACAAACTCACCAACATTCTCACACCTATCGCATTTGCATGCAAACACAAAGATCAAGCAAGC
ACGCACCGTGGAACCAGCTCACAAGCGTTGCATTTCCATGGCCGGTTCCCAGCCGAAACACCAGCTCCCCCGCCAGCCAG
CCCACCAAACAAGCCAGACCCTCTAGAACCATTAAGCACTATAAATACCCTAGCCATGGCACATCACCGCCGCACCACAA
GAGCAACCAACCATCCAC----GAGACACACAAGCACAGCACAGCAGCGGCGTGAAGGGAAAACTCCGGCAAGATGTCTC
AGCTCGCCCGCGCCAGCCTGACTGCGGTGGCGATGTTCCTTCTCCTTGCCGCCGCAGCAGCGGCGG---GG---------
---------------------CCGGCGGGCTGCCAGGACGACGTTGTGGCGCTCAACGAGGCCTGCTACCAGTACGTGCA
GAAGGGCGCGCCGACGGTGCCGCCGTCGCAGGAGTGCTGCGACGCCGTGAAGAGCGTGGACGTGCCCTGCGTCTGCAGCT
ACCTGGGCAGCCCCGGCGTGCGGGACAACATCAGCATGGAGAAGGTGTTCTACGTCTCCCAGCAGTGCGGCGTCAGCATC
CCTGGCAACTGCGGAGGTGAGCTAGCT-GCTGCTTCACTTGGTTGAC----AGACCACAC----ATGAACTGTGACTGAC
ATGCTTACCCCACCAGAGT--GCTAGTTCATTCAAACCTAAGAGAACTGGAGTACATG--------TACTAGGCATCG--
--ATGCCGTTCGAGCTCATTATTCTAAGTACGTAACAATTGAACTGA-CTGTATTTTGGGTTTATTGTTACAGGATCGAT
GGTCTGAAGCAAGAAGAGGCCGGCTGAATGGCAAGCTTGGATAACGTAAGCAGCGCAGTTAGCACTGCTGGAATAAATAA
GACGTCCCGGTCAACTCATAGGTGG-ACGATGCCGGAGCACAAGGAATGTATTGCCATTCAGTTGAAGTTATTTATAGTT
G-----------------------------------------------------------------TATTATACTTTGAC
TACGTTGCAACTTGCAGGACTCTTGTATTTCCCAGGTTGATCTATCATGTTATGTTACTCAATTAGGGCAATTCCGAAAT
GAATGACAGCATTGCAATAAGTATGAGCAACGAATTCCCCTGATATTATCTAATCTTGACCAGTGAAGAT-ATTCTGGAT
GACTGAACTGAAACCAAACACACCTGCAAATTCATGAAAACAATTTACACCTGCTTGTGCAAAACAAACAAACAAACAAA
CAATTTACACGTGAATATGCATGTAGGAATAGATGCCCACATCCTACTTGACTGCAGTCAAACTAAACCGCATACAAACA
TAACATACATACATACGCAGAAGACAAGATGGCAAAAGAAAAAGAACTGAGCAATCAATCCCCAATCTCTCCCCTTCA--
--AGTAGTGGTATATCTTAGCAAGTAATTACATCACAACTCAGTGGTTCATGGGTGGCCTAGAAAAGAAGCAGCCCCCCA
GTGGAAGAACTATACAACTCGCCCTCCACGAATCACATACATACTCATCCAGCCCAAAACACTGGACTCCGCAGCAGCA-
--CTCACAAACCTCTCTAGGACTAGCGCCGGCGTGTAAAATGCCGGCGCGTCTACACCGTCACCATCACCATAC------
-------ACTCACGAGAACTTGGAGGTGTTGAGCCTGCCCCACCACTTCCGCTTGGCCGAGTTGGGGGAGGACTCGTTGC
CGCC---GCC---GCCGCCGCTCGCGAGCTTGTTCAGGATCACCTTGGTCTCCCTGATGCGGGAGCCGAAGTCCTTCTTC
CACGAGTCGAAGTTCTGCTTCAGCCTGCGGAGCTCCACGTCCGGGTTCAGGCTCGCGTCCGCCTGCCCGGACTTGACCTC
CACCAGGAACTTGGCGTCGTCGGCGAACACCTGGCTCCGCTGCTCCAGCTCCTCCGCCAGCCGCCCGATGACGCTCATGC
TGGCGTTCATATCGCGCCCGGTGATCCGCGGCGCCGCGGCCAGCTGCTGGGAGGAGCCCCCGCCCACGTGGTTCCCGTTG
CTCTCCCAGCTCTGCTCCACGGACGAGTCCGACATCCGAGGCGTCTCGTCCAGGGCCAGGCTCTTCTTCGCCACCGACAG
GCTTGACTGCAGCGACCGCATCTGCTTCTGCCACATCTCCTCCATCGCCTTCATTTTCTGCTCGTATTCTAACCATCGGT
TCTCGTATTGCTGGAGCCGCTGGTGTAGCATCTCGTTCTC
>SNPs
SSSSS---S-------------S--------------------------------------------S------------
-----------S---------------------S----------------------------S-----------------
-----------------S---------SS------------------S---SSSSS------------S-----------
---------------------------S--S----------------S--------------------------------
--S------------------S----------------------------------------------------------
-----------------------------S-----------------------S-S------S---------S-------
--------------------------S----------------S------------------------------------
-------------------------S---------------------------S--------------------------
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-----------------------------------------------------------------------SSSS-----
----------S---S------------------SSSS-------S--------------------------------S--
S-------S-----S---------------SS----------------------------------S-------------
-----SS-SS-SS--------S----SS-S--SS-S----------S------------------------S--------
------------------------S-------------------------------------------------------
----------------------------------S---------------------------------------------
------------------------------------------S-------------------------------------
-------------S--------------------------S-------------------------S-------------
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-------------------------------------------------SS-S---------------------------
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----------------------S----S-------------S-S-------------S------S---------------
-----------S---S-S-SS------S-----------S--S---------S---S---SS--S------S-----SSS
SS---S--------S----------------------S------S--S--------------------------------
-----------S---------S--------------------------------------S-------------------
-------------------------S-----------------------S---------------------S--------
S-------------------------S----------SSSS---------------------------------------
----------------------SSSSS-SS--------------------------------------------------
-----------------------------------------------------SS--S---S--------S---------
-----------------------------------------------S-SSSSSSSSSS---------------------
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----------S-------------------------S-------------------------------------------
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-----------------S-----------------------S--------------------------------------
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---------------S-----------------------------S----------------------------------
----SSS---S-----------S---------------------------------------------------------
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---------------------------S----------------------------------------------------
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>forward_1154
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--------------TACAACAGACTCCACGACGC----------------------------------------------
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>reverse_2022
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---------------------AGCTGAATGGCAAGCTTGGA---------------------------------------
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>forward_1818
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--------------------------------------TCACTTGCTCAACAGCCTGT----------------------
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>reverse_2983
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----------------------GGCGAGCTTGTTCAGGATCA--------------------------------------
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