>input_sequence_66209
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------------------------------------ATGGTGATGGTCGAGCTCGCTGTGGCTGGATGGTTCGTGTCTGT
CTGCCTTTCCAAGCTCGCCGACCCTGTGATACAGCATGCAAAGGACCGGTACAAAGACCAGAAGAATTTTGTGGCCAACA
CCGAGAAGCTCAAGTGGCGACTCGAGCAGATTTCAGAAGCAATCAGCCGGGCCAAGGAAAGGGAAGTTGATGATTCCAAA
TTGCAGTCGTGGATCCAGAGACTCGGAGATGCGGTTTTCACAGCAGAAGATGTTCTTGATTCCATCAAGTATGCAATGTT
GAAGCACCAGGTAACGATCGAGCCTGTACTCAAGCGTTTAATTTCTCCTAGCAAAGATGCTTCTGATTTCATTCCC----
------------CAAGACACAAAAGACGCTGAAGATTTGACCAAAGTCATCATAAAGCTTGACAGAATTTCTGCAGAGAT
GAGTAGCTTGTGCTTCTTGTGTGGGCAAGATGCTACACAAGGATTGGTGCCTGATCAAGCTCCTGATTGGCGGGTGACCA
CTGCGTCCGACACACAACCAAATCTGGTTGGTCGGCAGAAAGAAGCAGATGAACTCATGGCATTTTTACTCAAACCTGAA
CAAGGTAATGAGAAAGTCTCACGTATTTCTGTTGTCGGAATGGGTGGTGTTGGGAAGACAGCTCTCGTCCGGGAAGCTTA
CAACGATAGCAGAACAGACTGCTTTGGAGTGAAGGTCTGGATCTGTGTATCACATAGAGCCAGCATCACAAGGGTCTTGA
TTGACGCAACCAATGCTGCTTCCAAAAAATTACTGCTTTATCGCCATCCTGCGCCCGACAAGGGCACCATCAAGAGTATG
CTGGCAGATGTTTTGAAAGATAAGAGATTTCTCATAGTCCTGAATGACATATGGGATTAG--------------------
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>chr4D_1_TraesCS4D01G118400
ATATCGCATACGTGTAAATTTTCTGCTTGACTGAAATATAACGGTTGGTACAAGCCAATGATTTGGACTCTAGTGTGCCA
CATGGTAATGAGATCTCCATGGTAATCATAGGGTAAATGCTGCAACCTGCTACTAAGATAACATACATTATTTG------
-TAGAAGACTAGAGATAGGATGATCTGAACTCTGAAGTCGCCGCTCTAACAACCACATTGGCCTTCGGAGCGGTGTAAAA
TGCTCCATGAACCGATAATCTTCAGTTGTCCCCAAC--AAAAATATATGCCGCTTGTGGACGGAAGCAAGCCTCACAC--
-----ACACAAAACAAACGTTGATCCTTCACTTAATTTCTCATGACAATGGTTGTTGGTTCTGAACAGAGGCTGTTGAAC
TAACTGGAAGGGCCATCAACCTTTCAGTCGACACAGGACTGTCAAAAAACGTCTTACATTATGGGACGGAGGGAGTAACT
GACTTCACCAGATCTATATATGACTGC---------------------------ACATGTATGAAATGCCAGTTCATCCT
CAAACTCAAGCCAAACCAACAGCATGTGAAAGGCGCACTGCTGATTAATGTATCCTGTAGTTTACAATATCTGAACCACC
CAGTTGACTACCAACACATTGCAGC----------------------------ATATGAACGGCAGCACAGATGCATGTG
AGTCGG----ACATTTTATCTTCTGCACATGGGGGAAGAAGGTTCAGATAAGCTGGCAGTGGCAGTGCATTCCTGTGTTA
TTCATGTCCCCTCCTAACTAACTTGACTGACTAACTGGTCATCAGCTCAGACCCACCGGCCCTGGATTGGGTC-TATGTT
CAGAGCATAATGATAATAGAATAGGAACAGACAGTCAAGGCATCCAGTCGGATTAAAGAAATTGAGATAAGCGCATAGCC
AGTTAAGCATACACCATTGATCAACCAACATAAGCTGCCAACTGAGCAGTGAAGCCCTGGAAGGTCTCATCCTCCTCTTC
CAGGACCCCCCTGAGATCCAGAAATTTTGATCTGCCATGGTGATGGTCGAGCTCGCTGTGGCTGGATGGTTCGTGTCTGT
CTGCCTTTCCAAGCTCGCCGACCCTGTGATACAGCATGCAAAGGACCGGTACAAAGACCAGAAGAATTTTGTGGCCAACA
CCGAGAAGCTCAAGTGGCGACTCGAGCAGATTTCAGAAGCAATCAGCCGGGCCAAGGAAAGGGAAGTTGATGATTCCAAA
TTGCAGTCGTGGATCCAGAGACTCGGAGATGCGGTTTTCACAGCAGAAGATGTTCTTGATTCCATCAAGTATGCAATGTT
GAAGCACCAGGTAACGATCGAGCCTGTACTCAAGCGTTTAATTTCTCCTAGCAAAGATGCTTCTGATTTCATTCCC----
------------CAAGACACAAAAGACGCTGAAGATTTGACCAAAGTCATCATAAAGCTTGACAGAATTTCTGCAGAGAT
GAGTAGCTTGTGCTTCTTGTGTGGGCAAGATGCTACACAAGGATTGGTGCCTGATCAAGCTCCTGATTGGCGGGTGACCA
CTGCGTCCGACACACAACCAAATCTGGTTGGTCGGCAGAAAGAAGCAGATGAACTCATGGCATTTTTACTCAAACCTGAA
CAAGGTAATGAGAAAGTCTCACGTATTTCTGTTGTCGGAATGGGTGGTGTTGGGAAGACAGCTCTCGTCCGGGAAGCTTA
CAACGATAGCAGAACAGACTGCTTTGGAGTGAAGGTCTGGATCTGTGTATCACATAGAGCCAGCATCACAAGGGTCTTGA
TTGACGCAACCAATGCTGCTTCCAAAAAATTACTGCTTTATCGCCATCCTGCGCCCGACAAGGGCACCATCAAGAGTATG
CTGGCAGATGTTTTGAAAGATAAGAGATTTCTCATAGTCCTGAATGACATATGGGATTAGGATTTATCAAGAAACATACT
GGACGCATTCGATATGCCATTTAGTCAAGCACGTGAAGGAAGTAAAGTCATACTCACTACTCGAGACCCAAGCATAGGAG
AAGGAATGAGTACAGTAGGGCCAATTCATGTTCACGGCTTACAGTCTGAACATTATTGGCAACTGTTCAAGGAACTTGCA
TTTCATAACAAAGACCCAGAAGAGTATCCAGAACTCTTACCCATAGGCGAAAACATAGCCGAAAGGCTAAATGGCTTGCC
CCAGGCAGCAGA--CATTTTGTCAGGCGTTACGGTCAGACTTCAATGCTAACCACTGGAGGGGTATTTCGAAAAGGAAAA
TGTATCAAATGGGAGCAGAGAAGGGTGGCCTCATGGCCACACTGAGATTAAGTCATGAACAGCTGCCAAGAGACCTCAAG
GAATGTTTCGTTTCTTGTTCTCTCTTCCCAAAAGGGCATGCCTTTCGAAAAGAAGAAATTATCCGTGTATGGATGGCTCT
CGGATATCTTGATGGCCCTGGAGCTGGAGTGCAAAGAATGGAAGATACAGGAAACAGTATTTTTACTCAGTTGCTGCAGA
GATCCTTCTTCAAGG---AAAACAATGAGGCACCAGGAACATACATCATACCTGAACCATTCGATGAACTTGCTGAATTC
TTATCTTCTGGTGAGTACTTCAGGATCGAAAAAAGAAGCGAATTTGATGATGGGCCAATAAATATCCCAGAGAGGGCCCG
TCATGTTTACCTTGATATCAATGATCTTGCAAGGGCCTCTGGAAGACTGAGTCGAATTACTAATCTGCGCAGTCTTGTGG
TAGTCGGTCAGATATCCTCTGGCTCACAGAAGTCGGACTTGATTCAGACC------CTTAAAGAACTTCTTATAGGGATG
AAGTGCCTGCGCGTGCTGATGGTCTCCGAGCCTCTCCTAGCAGATCTTCCTAAACTGAAGCACCTCCGTTACCTTGAGAT
CCATGTTGAGGAAAATTATGGAAATGCGTCT
>chr4B_1
ATATCGCATACGTGAAAATTTTCTGCTTGACTGAAATATAACGGTTGGTACAAGCCAATGATTTGGACTCTAGTGTGCCA
CATGGTAATGAGATCTCCATGGTAATCCTAGGGTA---GCTGCAACCTGCTACTAAGATAACATACATTATTTG------
-TAGAAGACCAGAGATAAGATGATCTGAACTCTGAAGTCGCCGCTCTAACAACCACATTGTCCTTCGGAACGGTGTAAAA
TGCTCCATGAACTGATAATCTGCAGTTGTCCCCAACATAAAAACATATGCCGCTTGTGGACCGAAGCAAGCCTCATAT--
-----ACACAAAACAAACGTTGATCCTTTACTTAATTTCTCATG-CAATGGTTGTTGGTTCTGAACAGAGGCTGTTGAAC
TAACTGGAAGGGCCATCAACCTTTCAGTCGACACAGGACAGCTACACA-------------------------AGTAACT
GACTTCACCAGATCTATATATGACTGC---------------------------ACATGTATGAAATGCCAGTTCATCCT
CAAACTCAAGCCAAGCCAACAGCATGTGAAAGGCGCACTGCTGATTAATGTATCCTGTAGTTTACAATATCTGAACCACC
CAGTTGACTACCAACACATTGCAGC----------------------------ATATGAACGGCAGCACAGATGCATGTG
AGTCCG----ACATTTTATCTTCTGCACATGGGGGAAGAGGGTTCAGATAAGCTGGCAGTGGCACTGCATTCCTGTGTTA
TTCATTTCCCCTCCTAACTAACTTGACTGACTAACTGGTCATCAGGTCAGACCCACAGGCCCTGGATTGGATC-TATGTT
CAGAGCATAATGATAATAGAGTAGGAACAGACAGTCAAGGCATCCAGTCGGATTAAAGAAATTGAGATAAGCGCATAGCC
AGTTAAGCATACACCATCGATCAACCAACATAAGCTGCCAACTGAGCAGTGAAGCCCTGGAAGGTCTCATCCTCCTCTTC
TCGGA-CCCCCTGAGATCCAGAAATTTTGATCTGCCATGGTGATGGTCGAGCTCGCTGTGGCTGGATGGTTCGTGTCTGT
CTGCCTTTCCAAGCTCGCCGACCCTGTGATACAGCATGCAAAGGACCGGTACAAAGACCAGAAGAATTTTGTGGCCAACA
CCGAGAAGCTCAAGTGGCGACTCGAGCAGATTTCAGAAGCAATCAGCCGGGCCAAGGAAAGGGAAGTTGATGATTCCAAA
TTGCAGTCGTGGATCCTGAGACTCAGAGATGCGGTTTTCACAGCAGAAGATGTTCTTGATTCCATCAAGTATGCAATGTT
GAAGCACCAGGTAACGATCGAGCCTGTACTCAAGCGTTTAATTTCTCCTAGCAAAGATGCTTCTGATTTCATTCCCCAAG
ACCATGCTTGCCCAAGACACAAAAGACGCTGAAGATTTGACCAAAGTCATCAAAAAGCTTGACAGAATTTCTGCAGAGAT
GAGTAGCTTGTGTTTCTTGTGTGGGCAAGATGCTACACAAGGATTCGTGCCTGATCAAGCTCCTGATTGGAGGGTGACCA
CTGCGTCCGACACACAACCAAATCTGGTTGGTCAGCAGAAAGAAGCAGATGAACTCATGGCTTTTTTACTCAAACCTGAA
CAAGGTAATGAGAAAGTCTCATGTATTTTTGTTGTCGGAATGGGTGGTGTTGGGAAGACAGCTCTCGCCCGGGAAGCTTA
CAACGATAGCAGAACAGACTGCTTTGGAGTGAAGGTCTGGATCTGTGTATCACATAGAGCCAGCATCACAAGGGTCTTGA
TTGACGCAACCAATGCTGCTTCCAAAAAATTACTGCTTTATCGCCATCCTGCGCCCGACAAGGGCACTATCAAGAGTATG
CTGGCAGATGTTTTGAAAGATAAGAGATTTCTCATAGTCCTGGATGACATATGGGATTGGGATTTATCAAGAAACATACT
GGACGCATTCAATATGCCATTTAGTCAAGCACGTGAAGGAAGTAAAGTCATAGTCACTACTCGAGACCCAAGCATAGGAG
AAGGAATGAGTACAGTAGGGCCAATTCCTGTTCACGGCTTACAGTCTGAACATTATTGGCAACTGTTCAAGGAACTTGCA
TTTCATAACAAAGACCCAGAAGAGTATCCAGAACTCTTACCCATAGGCGAAAACACAGCCGAAAGGCTAAATGGCTTGCC
CCAGGCAGCAGAGACATTTTGTCAGGCGTTACGGTCAGACTTCAATGCTAACCACTGGAGGGGTATTTCGAAAAGGAAAA
TGTATCAAATGGGAGCAGAGAAGGGTGGCCTCATGGCCACACTGAGATTAAGTCATGAACAGCTGCCAAGAGACCTCAAG
GAATGTTTCGTTTCTTGTTCTCTCTTCCCAAAAGGGCATGCCTTTCGAAAAGAAGAAATTATCCGTGTATGGATGGCTCT
CGGATATCTTGATGGCCCTGGAGCTGGAGTGCAAAGAATGGAAGATACATGAAACAGTATTTTTACTCAGTTGCTGCAGA
GATCCTTCTTCATCAAGAAAAACAATGAGGCACCAGGAACATACATCATACCTGAACCATTGGATGAACTTGCTGAATTC
TTATCTTCTGGTGAGTACTTCCGGATCGAAAAAATAAGCGAATTTGATGATGGACCAATAAATATCCCAGAGAGGGCCCG
TCATGTTTACCTTGATATCAATGATCTTGCAAGGGCCTCTGGAAGACTGAGTCGAATTACTAATCTGCGCAGTCTTGTGG
TAGTCGGTCAGATATCCTCTGGCTCAGAGAAGTCGGGCTTGATTCAGACC------CTTAAAGAACTTCTTATAGGGATG
AAGTGCCTGCGCGTGCTGATGGTCTCCGAGCCTCTCCTAGCAGATCTTCCTAAACTGAAGCACCTCCGTTACCTTGAGAT
CCATGTTGACGACAATTATGGAAATGCGTCT
>chr4A_126
--------------------------------------------------------------------------------
---------------------------------------------CCTGCCACTAACATAGCATACATTAATTTTGTAAA
ATAAAATACTAGAGGTAAGATGATCTGAACTCTAAAGTCGCCGCTCTAACAACCTCATCGTCATTCAGAACGGTGTAAAA
TGCTCCATGAACCGATAATCTGTACTTGTCCCCAAC--AAAAATATATGCCTCATGCGCCACCAAACCACATTGATTTTG
TGATGACACAAAACAAGCGCTGATCCTTCGCTTAATTTCTCATGACAATAGTTGCTGCTTCTGAACAGAGACTGTTGAAC
TAACTGGAAGGGCCATTAACCTTTCAGCCCACATAGGACAGCT--ACA-------------------------AGCAACT
GACTTCACCAGATCTATATATGAAGATTCTCAAAAAAAGAAAAGATCTATATATACATATATGAAATACCAGTTCATCCT
CAAACTCAAGCCAAACCAACAGCATGTGAAAGGCTCACTGCTTATTAATGTATCCTATAGTTTAGGATATCTGAACCACC
CAGTTGACTACCAGCACACTGCAGCAGGCACATCAAGGATCATGGTTAACCCAATATGAACGGCAGCACAGATGCATGTG
AGTCCGTCGGACATTGTATCTTCTACACATGGGGGAAGAAGGTTCAGATAAGATGGCACTGA------ATTCCTGTGTTA
TTCTTTTGCCCTCCTAACTAACTTGATTGACCAGCTGATCATCAGCTCAGACCCACCGGCCCTGGATCAGATCTTATGTT
CAAAGTATAATGATAATAGAATAGGAACAGACAGTCGAGGCATCGAGCCGCATTAAAG-AATTGAGATAAACACATAGCC
AGTTAAGCATACACCATTGATCAATCAACATAAGCTGCCAACTGAGCTGTGGAGTCCTGGAAGGTTTAATCATCCTCTTC
CTGGA-CCCCCTGAGATCCAGAAATTTTGATCTGCCATGGTGATGGTCAAGCTCGCTGTGGCTGGATGGTTCGTGTCTGT
CTGCCTTTCCAAGCTCGCCGACCCTGTGATACAGTATGCAAAGGACCGGTACAAGGACCAGAAGAATTTCGTGACCAACA
CCGAAAAGCTCAAGTGGCGCCTTGAGCAGATTTCAGAAGCAATCAGCCGGGCCAGGGAAAGGGAAGTTGATGATTCCAAA
TTGCAATCGTGGATCCAGAGACTCAGAGATGCGGTTTTCACAGCAGAAGATGTTCTTGATTCCATCAAGTATGCAATGTT
GAAGCACCAGGTAACGA------CTGAACACAAGCATATATTTTCTCCTAGAAAAGATGCTTCTGATTCCATTTCCCAAG
A----------------CAAAAATGACGCTGATAATTTGACGAAAGTCATTAAAAAGCTTGACAACGTTTCTGCGGAGAT
GAGAAGCTTGTGGTTCTTGCGTGGGCAAGATGCTACACAAGGATTGGTGCCTGATCAAGCTCCTGACTGGCGGGAGACCA
CTGCATCCGACACACAACCAAAGCTGGTTGGTCGGCAGAAAGAAGCAAATGATCTCATGACCTTATTACTTGAGCTTGAA
CAATGTAAGGAGAAAATCTCACATATTTCTGTTGTCGGAATGGGTGGTGTTGGGAAGACAGCTCTCGTCCGGGAAGCTTA
CAATGATAACAGAACAGACTGCTTTGGGGTGAAGGCCTGGATCTGTGTATCACATAGAGCCAGCATCACAAGGGTGTTGA
TTGATGCAACCAATGCTGCTTCTAAAAAATTACTGCTTTATCGCCATCCTGCGCCCGACAAGGGCACTATCAAGAGTATG
CTGGCAGATGTTTTGAAAGATAAGAGATTTCTCATAGTCCTGGATGACATATGGGATTGGGATTTGTCAAGAAACATACT
GGATGCGTTCAATATGCCATTTAGCCAAGCACGTGAAGGAAGTAAAGTCATAGTCACTACTCGAGACCCGAGCATAGGAG
AAGGAATGAGTACAGAAGGGCTAATTCATGTTCACGGCTTAGAGTTCAAACATTATTGGCCACTGTTCAAAGAACTTGCA
TTTCATAACAAAGACCCGGAAGATTATCCAGAACTCTTATCCATAGGCAAAAACATAGCCAAAAGGCTAAATGGCTTGCC
ACAGGCAGCGGAGACATTTTGTCAGGCGTTACGGTCAGACTTCAAGGAGACCCACTGGAGGGGTATTTCGAAAAGGAAAA
TGTGTCAAATGGGAGCAGAGAAGTGTGGCATCATGGCCACACTGAGATTAAGCCATGAACAGCTGCCAAGAGACCTCAAG
GAATGTTTTGTTTCTTGTTCTCTCTTCCCAAAAGGGTATGCCTTTCAAAAAGAAGAAGTTATCCGTGTATGGATGGCTCT
TGGATATCTTGATGGCCCTGGAGCTGGAGTGCAAAGAATGAAAGATATAGGGAAAAGTATTTTTACTCAGTTGCTGAAGA
GATCCTTCTTCAAGGAAAAT---AATGAGGCACCAGGAACATACATCATACCTGAACCATTGGATGAACTTGCTGAATTC
TTATCTTCTGGTGAGTACTTCCGGATCGAAAAAAGAAGCGAATTTGATGATGGACCAATAGATATCCCAGAGAGGGCCGG
CCATGTTTACCTTGATATCAATGATCTGGCAAGGGCCTCTAGAAGACTGCGTCAAATTACTAATCTGCGCAGTCTTGTGG
TAGTCGGTCAGATATCCTCTGGCTCAAAGAAGTTGGACTTGATTCAGACCAAGACCCTTCAAAAACTTCTTACAAGGATG
AAGTGCCTGCCCGTGCTGATGGTCTCCGAACCTCTCCTAGCAGATCTTCCCGAACTGAAGCACCTCCGTTACCTTGAGAT
CCATGTTGAGGACAATGATGGAAATGCGTCT
>SNPs
--------------S-----------------------------------------------------------------
---------------------------S-------SSS------------------------------------------
-----------------S------------------------------------------S--------S----------
---------------------S---------------------------------------S-------------S-S--
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---------------------------------------S-SS-S-S-SSSSSSSSSSSSSSSSSSSSSSSSS-------
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----S-----------------------------------------------------------S---------------
-----S----------------------------------------------------------------S---------
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-S---S--------------------------------------------------------------------------
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------------------------S-------------------------------------------------------
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----------------------------------------------------S---------------------------
------------S-------------------------------------------------------------------
-------------------------------------------------------------S------------------
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-------------------------------------------------------------------S------------
------------------------------------------S---------------S---------------------
----------S-----------------------------------------S---------------------------
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-------------------------------------------------------------S------------------
---------------------S-------------------------------S--------------------------
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--------------------------S-----------------------------------------------------
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------------S------------------
>forward_230
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--------------------------------------------------AACCACATTGGCCTTCGGAG----------
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>reverse_1305
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------------------------GGAGATGCGGTTTTCACAGC------------------------------------
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>forward_440
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-------------------CCTTTCAGTCGACACAGGACT----------------------------------------
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>reverse_2053
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----------------------------------------------------CTCACTACTCGAGACCCAAGC-------
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-------------------------------
