>input_sequence_66201
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-------------------------ATGGCGTTCTCGGAGCATTCGCTGCCGAAGCCGATCGCCGGCCACCCGCAGCCGC
AGCCGTCCCCGCCGTCGTCTCCGAGCGAGAGGCCGGCGCCGCGTGGCAGGCGGCGCGCGCAGGAGCCCGGGCGCTTCCTG
GGCGTGCGCCGGCGGCCGTGGGGCCGGTACGCGGCGGAGATACGCGACCCGACCACCAAGGAGCGGCACTGGCTCGGCAC
CTTCGACACGGCGCAGGAGGCCGCCCTGGCCTACGACCGCGCCGCGCTCTCCATGAAGGGCGCGCAGGCGCGCACCAACT
TCGTCTACGCGCACGCCGCCTACAACAACTACCCGCCCTTCCTCGCGCCGTTCCACGCGCAGCAGCAGCCCGCCGCCTAC
GC---GTCCTCGACCATGCCGTACGCCGGCCAGCAGCAC------------GCGGCGCCGCACATTGGCAGCTCGTACCA
CCACGGCCACGGCCACGGCGGCCTCGGCTACCACCAGCAGGGCCCGGGCGCCGGCGCGGGCGAGTGCTCCATGCCGGTGC
CCAATGCCGCCGATCACGGCGCCAGCAGCCCGATGGACGTGCGCGGCAGCAGCGGCCACGACTTCCTCTTCCCCAGCGCC
GACGACAACTCCGGGTACCTGAGCAGCGTGGTGCCGGAGAGCTGCCTCCGGCCCCGCGGCGGCGACCTGCAGGACGCGCG
GCGCTACTCCGTGTCCGACGCCGACGCCTACGGGCTGGGCCTCCGGGAGGACGTGGACGACCTGGCGTCCATGGTGGCCG
GCTTCTGGGGCGGCGCCGACGCGGCGTACGGCGGGTTCGCCCCCGCGAACGGCGGCGGCCACGACATGGTCGCCTCGTCG
CAGGGCTCCGACAACGGCTACTCCCCCTTCAGCTTCCTCTCCCACTGA--------------------------------
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>chr2D_1_TraesCS2D01G118200
GTATCTTGGAGCATAGATTGCAAATTGTCTCTTTCAAAACAAATAGATTACAATTCTTCAAAAGGCTTGATGCATAGGTA
GGCAAGCTCTCTTCTTTCCCTTCTTTTCTTGTCAGTGGCAGGCATCTTTACACCATCTTATTAGTTTGCAATACTTGGTA
CTCAGTAGTAAATCATCAAAGCATGCAAGGCAGTATGCCCAACAAACATAGATGCCACAACAAGCTATACATGTAGGGCC
ATATAATTGAAGA-----GTTTGTCTTGGCAGGGGCTTCAATCGGCTCTGGCTTCACAACTAGTGTGTCATATACTCATA
TGCTGGTTGATTAATTTGGAGTGGACTAGAATCATGACAAAGATAATCATATCTGAAAATGACACTAATTAATACTTAAT
TGCAAGGATTGTAGCATGCATAATACTATTCATAAATGAATTGTGTGCATGAAAA-------------------------
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--------------------------------CTAAGAGTAGAACATTCTAACTTCCAAGTGTTA-TTTTCTAGCAACAC
ATACACAGACACATATATATAGCTATATGTTTGACTGGCACAACATTCTCCTCCTCATCTCTTTGGTCCTAAGGTTAGGG
CACACAAATCCAAACACAAGGTGCATACATACAAACATGCAGTGAGCTTTCCA---TTCCATTCCCTCCTTTTACTCCTA
GAATTAAACAAG--------------------------------------------------------------------
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------------------------------------------------------------------------TGTACTGC
AGCGCATGCATGTCACTCCCCTCC---CCTATC-----ACGCCATCTCATCCACAGTGCTCTCA--------CTC---CT
AGCTTCTCCCTCCTCCGAGCTCCCCATTTAAATACCACCCTGCCTCCCTCCATAGTGAGCACTACCCACACTACACACTA
GAAGCTCACAGTCTCAGCAACCACCCCCTCAACCTCCTCAACCTAAGCTAGCTAGCTCACACCTCACAGCGCAAGCTAGG
CTGGAGCAGTAGTATAGTAGCCAGCCAGCCTCACTTCACTTCAGTTCTGCCATGAGCATCCGCAGCAGCAGCGGCGGCAG
CGGCGGCGGCCATGCCTCCCAGATGATGGCGTTCTCGGAGCATTCGCTGCCGAAGCCGATCGCCGGCCACCCGCAGCCGC
AGCCGTCCCCGCCGTCGTCTCCGAGCGAGAGGCCGGCGCCGCGTGGCAGGCGGCGCGCGCAGGAGCCCGGGCGCTTCCTG
GGCGTGCGCCGGCGGCCGTGGGGCCGGTACGCGGCGGAGATACGCGACCCGACCACCAAGGAGCGGCACTGGCTCGGCAC
CTTCGACACGGCGCAGGAGGCCGCCCTGGCCTACGACCGCGCCGCGCTCTCCATGAAGGGCGCGCAGGCGCGCACCAACT
TCGTCTACGCGCACGCCGCCTACAACAACTACCCGCCCTTCCTCGCGCCGTTCCACGCGCAGCAGCAGCCCGCCGCCTAC
GC---GTCCTCGACCATGCCGTACGCCGGCCAGCAGCAC------------GCGGCGCCGCACATTGGCAGCTCGTACCA
CCACGGCCACGGCCACGGCGGCCTCGGCTACCACCAGCAGGGCCCGGGCGCCGGCGCGGGCGAGTGCTCCATGCCGGTGC
CCAATGCCGCCGATCACGGCGCCAGCAGCCCGATGGACGTGCGCGGCAGCAGCGGCCACGACTTCCTCTTCCCCAGCGCC
GACGACAACTCCGGGTACCTGAGCAGCGTGGTGCCGGAGAGCTGCCTCCGGCCCCGCGGCGGCGACCTGCAGGACGCGCG
GCGCTACTCCGTGTCCGACGCCGACGCCTACGGGCTGGGCCTCCGGGAGGACGTGGACGACCTGGCGTCCATGGTGGCCG
GCTTCTGGGGCGGCGCCGACGCGGCGTACGGCGGGTTCGCCCCCGCGAACGGCGGCGGCCACGACATGGTCGCCTCGTCG
CAGGGCTCCGACAACGGCTACTCCCCCTTCAGCTTCCTCTCCCACTGAAACAACAAATGCACCAGCCAGCATTGCT----
------------CTCAGTGCTCTGCTGTGATCACCATCGATCGACCATAGCTAGGTAGTAGTGTTTGTTTGGAGAGTTGG
ATCGATCGATCAGTCACAGTACGTGGCAGCAGTAGAAGGTCGATCGACGAAGAAGAAGAGTGGCTT----GTTTGGGTGC
CCTAGCTTAGCGGATGCTCACATCCATGTACTTAGGCTCTTTCATTTAGCAGCACTATTACTACGTACCAGTACTAGTAA
C------TTTTCATGCATGCACGAGTGACATGCTTAAGTTATC-----TCTCTCTCTAAACTTATTACAGTCTCTCTCTA
ATTAGTTAGT---CCTGTGGAATTAAAGTGGCGGATCGAGAGTACTCGA----GAGGCTCGAGAATGTAGTACGCAAACG
CATACTGTTGTTGATCCTTGAAAGTTTCAGTTTTGGATTGTAGTTTTGTTGGATTCAGATAGGCCGGCCGGAGGAACATG
TCAA-GTACGTACTCTCCTACGTACTTA----------------------------------------CCTGAAGGGAGA
AGATAAGGGGAATAGTACACGGACCACGTACTAAT-GTGGTACTACGCCTTGACAGTTCAACGGAAAGGTAGATGTTCAC
GGACAAGTGTCAAGCAGGCGACCTCCTTTTTTTTCTTGGG-------TCGCCAGGTACTTGGTGCTGATTCTAGGGTACG
TCACGG--------TCAGACCCATCCATCAGA--------GGGCCATGCACAAAATGTATCCTCTTCTATGCTGGTGCAG
GGCTTATATATAAACCCTTTCATTTCCTCCGTAGCTTGCTTGGATTTGTTGGATCGGAAATGTTCTTATTAATCAATAGC
AATACAGTACAGTACA--AAATGCGCATGTAACCATTTGAATTTATTGGACAATCAAAC---------------------
------------------------------------------------------------------AAAGTATATCACAC
A-AAGAACAAGCAATTGGGTTCAAGTCCTAAACTTGGCACGGATGCTCGCATTTTGCTAGATTTTTTTTAAGGAACATTT
TGCTGGATTTATTCCAGACATTCCGACGATATTTATTTAGT
>chr2A_1
GTATCTTGGAGCATAGATTGCAA-TTGTCTCTTTCAAAACAAATAGATTACAATTCTTCAAAAGGCTTGATGCATAGGTA
GGTAAGCTCTCTTCTTTCCCTTCTTTTCTTGTCAGTGGCAGGCATCTTTACACCATCTTATTAGTTTGCAATACTTGGTA
CTCAGTAGTAAATCATCAAAGCATGCAAGGCAGTATGCCCAACTAACATAGATGCCACAACAAGCTATGCATGTAGGCCC
ATTAATAATTATTAAAGTGTTTGTCTTGGCAGGGGCTTCAATCGGCTCTGGCTTCAGAACCAGTGTGTCATATACTCATA
TGCTGGTTGATTAATTTGGAGTGGGCTAGAATCATGACAAAGATAATCATATCTGAAAACGACACTAATTAATACTTATT
TGCAAGGATTGTGGCATGCATAA---TATTCATAAATGAATTGTGTGCATGAAAA-------------------------
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--------------------------------CTAAGAGTAGAACATTCTTACTTCCAAGTGTTATTTTTCTAGCAACAC
ATACACA--CACACATATATAGCTATATGTTTGACTGACACAACATT---CTCCTCATCTCTTTGGTCCTAAGATTAGGG
CACACAAATCCAAACACAAGGTGCATACATACAAACTTGCAGTGAGCTTTCCA---TTCCATTCCCTCCTTTTACTCCTA
GAATTAAACAAG--------------------------------------------------------------------
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------------------------------------------------------------------------T-----GC
AGCGCATGCATGTCCCTCCCCTCCTCCCCTACC-----TCGCCATCTCATCCACAGTGCTCTCA--------CTCCTTCT
AGCTTCTCCCTCCTCCGAGCTCCCCATTTAAATACCACCCTGCCTCCCTCCATAGTGAGCACTAC---------ACACTA
GAAGCTCACAGTCTCAGCAACCACCTCCTCAACC---------TAAGCTAGCTAGCTCACACCTCAGAGCTCAAGCTAGG
CGGGAGCAGTAGTATAGTAGCCAGCCAACCTCACTTCACTTC-----TGCCATGAGCTCTCGCAGCAGCAGCGG------
---CGGCGGCGGTGCCTCCCAGATGATGGCCTTCTCGGAGCATTCGCTGCCGAAGCCGATCGCCGGTCACCCGCAGCCGC
AGCCGTCCCCGCCGTCGTCGCCGAGCGAGCGGCCGGCGGCGCGCGGCAGGCGGCGCGCGCAGGAGCCCGGGCGCTTCCTG
GGCGTGCGCCGGCGGCCGTGGGGCCGGTACGCGGCCGAGATACGCGACCCGACCACCAAGGAGCGGCACTGGCTCGGCAC
CTTCGACACGGCGCAGGAGGCCGCCCTGGCCTACGACCGCGCCGCGCTCTCCATGAAGGGCGCGCAGGCGCGCACCAACT
TCGTCTACGCGCACGCCGCCTACAACAACTACCCGCCCTTCCTCGCGCCGTTCCACGCGCAGCACCAGCCCGCCGCCTAC
GCCGCGTCCTCGGCCATGCCGTACGGCGGCCAGCAGCAGCACGCGGGCGCGGGGCCGCCGCACATTGGCAGCTCGTACCA
CCACGGCCACGGC---------------TACCACCAGCAGGGCCCGGGCGAGTGT------------TCCATGCCGGTGC
CCAGTGCCGCGGATCACGGCGCCAGCGGCCCGATGGACGTGCGCGGCAGCAGCGGCCACGACTTCCTCTTCCCCAGCGCC
GACGACAACTCCGGGTACCTGAGCAGCGTGGTGCCGGAGAGCTGCCTCCGGCCCCGCGGCGGCGACCTGCAGGACGCGCG
GCGCTACTCCGTGTCCGACGCCGACGCCTACGGGCTGGGCCTCCGGGAGGACGTGGACGACCTGGCGACGATGGTGGCCG
GCTTCTGGGGCGGCGCCGACGCGCCGT---------------------ACGGCGGCGGCCACGACATGGTCGCCTCGTCG
CAGGGCTCGGACAACGGCTACTCCCCCTTCAGCTTCCTCTCCCACTGAAACGGACGCGCTGGCATTGC-------TCTTA
GCCTCTTACGTACTCAGTGGTCTGCTGTGCCCACCGTCGGCCATTAGCTAG------GTAGTGTTTGCTTCGTGAGTTCG
ATCGATCGATCAT-----------------AGTAGAAGATCGT--------GAAGAAGAGTGGCTTTGTTGTTTCGGTGC
CCTAGCTTAGCGGATGCTCACATCCATGTACTTAGGTTCTTTCAATTAGCAGCACTATTACTACGTACTA---CTAGTAC
TAGTAAGTTTTCATGCATGCACGAGTGACATGCTTAAGTTATC-----TCTC--TCTAAAATTATTACAGCCTCTCTCTA
ATTAGTTAGT---CGTGTGGAATTAAAGTGGCGGATCGAGAGTACTCGA----GAGGCCCGGGAATGTAGTACGCACACG
CACACTGTTGTTGATCCTTGAAAGCTTCAGTTTTGGGTTGTAGTTTTGTTTGATTCAGATAGGCCGGCCGGAGGAACATG
TCAAAGTACGTACTCTCCTACGTACTTA----------------------------------------CCTCAAGGAAGA
AGATAAGGGAAATAGTACACGGACCACGTACTAGACGTAGTACTACCCATTGACAGTTCAACGGAAAGGTAGATGTTCA-
GGACAAGTGTCAAGCAGGCGACCTCCTTTTTTTTCTTGGGTCGCCACTCGCCAGGTACTTGGTGCTGATTCTAGGGTACG
TCACGCTCAGAGCCTCAGACCCATTCATCAGATGATCAGAGGGCCATGCACAAAATGTATCCTCTTCTATGCTGGTGCAG
GGCTTATATATAAACCCTTTCATTTCCTCCGTAGCTTGCTTGGATTTGTTGGATGGGAAATGTTCTTATTAATCAATAGC
AAAAAAAGGAGAAGATATAAATGTGCATGTAACCATTTGAGTTTATTGGACAATCAAACAAATTCAGTTTTGCCAGATCG
CTATATAGTGCTTGACTTGTACAATATTTCTTATGACATAAATGAGACATGTATTACCATGCACAAAAAGTATATCACAC
AAAAGAACAAGCAATTGGGTTCAAGTCCTAACCTTGGCACGGATGCTCGCACTTTGCTAGATTTTTTT-AAGGAACATTT
TGCTGGATTTATTCAAGACATTCCGACGATATTTATTCAGT
>chr2B_1
GTATCTTGGAGCATAGATTGCAA-TTGTCTCTTTCAAAACAAATAGATTACAATTCTTCAAAAGGCTTGATGCATAGGTA
GGTAAGCTCTCCTCTTTCCCTTCTTTTCCTGTCAGTGGCAGGCATCTTTACACCATCTTATTAGTTTGCAATACTTGGTA
CTCAGTAGTAAATCATCAAAGCATGCAAGGCAGTATGCCCAACTAACATAGATGCCACAACAAGCTATGCATGTAGGACC
ATTAATA---ATTAAAGTGTTTGTCTTGGCAGGGGCTTCAATCGGCTCTGCCTTCACAATCAGTGTGTCATATACTCATA
TGCTGGTTGATTAATTTGGAGTGGACTAGAATCATGACAAAGATAGTCATATCTGAAACTGACACTAATTAATACTTAAT
TGCAAGGATTGTAGCATGCATGA---TATTCATAAATGAAGTGTGCATGAAAACTAAGGGCCTGTTTGGTTCCAAATAAG
TCACCAACTTATAAGTCGAAAAGTGAAAAAAGTGACTTATTTTGCCAAACAGACCCGACTTATAAGTCACCCCAACTTAT
AAGTCATAAGTTGCTCCACCCCCAACTTAAAACTTATAAGTGACCCTCTTTTGCGTGGGTCCCATCACCTGCATGATGTT
GATTGGTGTGGAAAGGTGTGTCAGGTGACTTATAAGTCAGGTGACAACCAAACATGCGTGACTTATAAGTCACTGGTTTT
AAGTCAGGTGACTTATTGAAACCAAACAGGCCCTAAGAGTAGAACATTCTAACTTCCAACTGTTATTTTTCTAGCAACAC
AT--ACA--CACACATATATAGCTATATGTTTGACCGGCACAACATT---CCCCTCTTCTCTTTGGTCCTAAGGTTAGGG
CACACAAATCCAAACACAAGGTGCATACATACAAACTCGCAAACTTGGAGTGAGCTTTCCATTCCCTCCTTTTACTCCTA
GAATTAGGCCCTGTTTGGTTCATAAGTCCTAGGACCTTTTTTAGTCCCAACTTATAAGTCTCAAGTCCCTAAAAAGTCCC
TACCTGTTTGGTTCCTGGGACTTATAAGTCCATATAAGACCATATTACAACTATAAGTACCTATAAGTCCCTCCTTGAGA
GTCTTATTTCATAAGTCCCAAACGGCCACTTTAAGTCCCTATAAGTTCCTCCTGTTTGGTTTAGATGGGACTTATAGAGA
CTTTTTTAAGTCCCTAAGCCAATAAATCCCTGGAAACAAACACCCTCTTAAACTAAACAAGAGCAGGTGCAAT-----GC
AGCGCATGCATGTCACTCCCCTCC---CCTACCCAAGGTCGCCATCTCATCCACAGTGCTCTCAGCCTCTCACTCCTTCT
AGCTTCTCCCTCCCCCGAGCTCCCCATTTAAATACCATCCTGCCTCCCTCCATAGTGAGCACTAC---------ACACTA
GAAGCTCACAGTCTCAGCAACCACCTCCTCAACC---------TAAGCTAGCTAGCTCACACCTCAGAGCTCAAGCTAGG
CAGGAGCAGTAGTGTAGTAGCCAGCCAGCATCACTTCAGTTG-----TGCCATGAGCTCTCGCAGCAGCAGCGG------
---CGGCGGCCAGGCCTCCCAGATGATGGCCTTCTCGGAGCATTCGCTGCCGAAGCCGATCGCCGGCCACCCGCAGCCGC
AGCCGTCCCCGCCGTCGTCGCCGAGCGAACGGCCGGCGCCTCGCGGCAGGCGGCGCGCGCAGGAGCCCGGGCGCTTCCTG
GGCGTGCGCCGGCGGCCGTGGGGCCGGTACGCGGCCGAGATACGCGACCCGACCACCAAGGAGCGGCACTGGCTCGGCAC
CTTCGACACGGCGCAGGAGGCCGCCCTGGCCTACGACCGTGCCGCGCTCTCCATGAAGGGCGCGCAGGCGCGCACCAACT
TCGTCTACGCGCACGCCGCCTACAACAACTACCCGCCCTTCCTCGCGCCGTTCCACGCGCAGCAGCAGCCCGCCGCCTAC
---GCGTCCTCCACCATGCCGTACGGCGGGCAACAGCG---CGCGGGCGCGGCGGCGCCGCACATTGGCAGCTCGT---A
CCACGGCCACGGC---------------TACCACCAGCAGGGCCCGGGCGCCGGCGCGGGCGAGTGCTCCATGCCGGTGC
TCAATGCCGCGGATCACGGCGCCAGCAGCCCGATGGACGTGCGCGGCAGCGGCGGCCACGACATCCTCTTCCCCAGCGCC
GACGACAACTCCGGGTACCTGAGCAGCGTGGTGCCGGAGAGCTGCCTCCGGCCCCGCGGCGGCGACCTGCAGGACGCGCG
GCGCTACTCCGTGTCCGACGCCGACGCCTACGGGCTGGGCCTCCGGGAGGACGTGGACGACCTGGCGTTGATGGTGGCCG
GCTTCTGGGGCGGCGCCGACGCGGCGTACGGCGGGTTCGCCCCCGCGAACGGCGGCGGCCACGACATGGTCGCCTCGTCG
CAGGGCTCCGACAACGGCTACTCCCCCTTCAGCTTCCTCTCACACTGAAG---CAAATGCACCGGCATTGCTCGATCTTA
GCCTCTTACGTACTCAGTGGTCTGCTGTGCCCA--GTCGGCCGTTAGCTAG------GTAGTGTTTGCTTCGTGAGTTCG
ATCGATCGATCAT-----------------AGTAGAAGATCGT--------GAAGAAGAGTGGCTT----GTTTCGGTGC
CCTAGCTTAGCGGATGCTCACATCCATGTACTTAGGCTCTTTCAATTAGCAGCACTATTACTACGTACTACTACTAGTAG
TAGTAAGTTTTCATGCATGCACGAGTGACATGCTTACTTTTTACTGTATCTC--TCTAAGCATATTACAGTCTCTCTCTA
ATTAGTTAGTAGTCCTGCGGAATTAAAGTGGCGGATCGAGAGTACTCGATCGAGAGGCTCGAGAATGTAGTACGCA----
---------------CCTTGAAAGTTTCAGTTTTGGATTGTAGTTTTGTTGGATTCAGTTTT-------GGAGGAACATG
TCAA-GTACGTACTCTCCTACGTACTTATACTCTTTTTTTTTTTTTGCATCGAACGTACTTATACTTACCTGAAGGAAGA
AGATAAGGGGAATAGTACACGGACCACGTACAAGACGTAGTACTGCGCCTTGACAGTTCAACGGAAAGGTACATGTTCAC
GGACAAGTGTCAAGCAGGCCACCTCCTTTTTTT-CTTGGG-------TCGCCAGGTACTTGGTGCTGATTCTAGGGTACG
TCACGG--------CCAGATCCATCCATCATGGCCATTGTCTG---------AAATGTATCCTCTTCTGATG--------
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>SNPs
-----------------------S--------------------------------------------------------
--S-----------------------------------------------------------------------------
-------------------------------------------S------------------------S--------S--
--SS-SSSSS-SS-----------------------------------------------S-------------------
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-----------------------SSS------------------------------------------------------
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-------SS----S---------------------------------SSS------------------------------
------------------------------------S-------------------------------------------
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-------------------------------------------------------------------------SSSSS--
-------------------------------S------S-----------------------------------------
-----------------------------------------------------------------SSSSSSSSS------
-------------------------S--------SSSSSSSSS-----------------------S---S---------
-S----------------------------------------SSSSS----------SSS--------------SSSSSS
SSS---------------------------S-------------------------------------------------
-------------------S---------S-------------S------------------------------------
-----------------------------------S--------------------------------------------
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-------------------------S------------S-----------------------------------------
-------------SSSSSSSSSSSSSSS----------------------------------------------------
----------S---------------------------------------------------------------------
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---------------------------------------------------------------------S----------
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---------------------------------------------------SS-------------SSSSS-S-S-----
-------------------S---------SS----S---SS--SSSSSSSSSSSSSS----------S--S-S-----S-
------------SSSSSSSSSSSSSSSSSS--------S---SSSSSSSSS-----------------------S-----
--------------------------------------------S-----------------------S-S--------S
S---------------------------------------------------SS--------------------------
----------------------------------------------------------------------------S---
--S-----------------------------------------------------------------------------
----------------------------------------------------------------------------S---
---------------------------------SS---S-----------------------------------------
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------------------------------------------------------S-------------------------
--S-S-SSSSSSSSSS-------S----------------S---------------------------------------
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-------------------------------S-------------------S----------------S-----------
--------------S----------------------S---
>forward_1563
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-----------------------GCCAGCCTCACTTCACTTCA-------------------------------------
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>reverse_2656
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---------------ACAGTACGTGGCAGCAGTAG---------------------------------------------
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