>input_sequence_66197
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-------ATGATGGATCACCTGAGCCTGGTGCCCTACGAGGGAGGCAGCGGCGCCGGGGGCGACGCCGGGGCCAAGTACA
AGGAGTGCATGCGCAACCACGCCGCCGCCATGGGCGGCCAGGCCTTCGACGGCTGCGGGGAGTACATGCCGGCCTCGCCC
GACTCGCTCAAGTGCGCCGCCTGCGGCTGCCACCGCAGCTTCCACCGCCGCGCGGGTAGCCTCGCGGGCGGGGCCTGCCC
GGCGCCCTTCTTCTTCAGCCCGCCCCCGCCGCCGCCCCCGCACCATCACCCGCCGCCGCACCACCCCGTGCTGCAGGGCT
TCCTCCCGTCGGCGCCCCCGCGGCCGCCCCAGCTCGCGCTGCCGTACCACGCCGTGCCCGCCGCGTGGCACCACGCCCTG
CTGGACCCCGCGCGCGCCGGCTCGGAGACGCCTCCCCGGGCGGACGACTGCAGCCCCGGGTGCGGGAGCGGGAGCTTCTC
GAGGAAGCGGCACCGGACCAAGTTCACCCCGGAGCAGAAGGAGAGGATGCGCGCCTTCGCCGAGAAGCAGGGGTGGCGCA
TCAACCGCGACGACGGCGGCGCCCTCGAGCGCTTCTGCCTCGAGATCGGCGTCAAGCGGAACGTCCTCAAGGTCTGGATG
CACAACCACAAGCACCAGCTCGCCTCGCCCACCTCCGTCGCGGCCGGTATGGGCATGGGCATGGGGATGGGCATCGGCAT
CAACCCAGGAGCCCTCGGCACCGGCACTGGGACCGGCGCTGACGCTGGCGTTGGCGTTGGCGGTGGCGTTGGAGCGGGCA
CCGGCGACGGCGACGGCGACGACGACGACACGGACGACGACTCGCCTCCACGCGCCGCCGTCTCGTCGCCCTCCCCCTCC
CCCATCAGCGTCTAG-----------------------------------------------------------------
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>chr2A_1_TraesCS2A01G305400
TTAGTGTGACAATAACCTACTAACATGGCCACCGAAGTTCGAGAAATCCACGCTGACATTTGAGTCCCGTGACGTGCCAT
ATTTTCTGTGCCGTGTAATTAAATCAGCTGCAAAGATTGTGATCTAATTGACAGAGAGT---AACAAGATTGGAGCTAGA
ACCCCCTGGCAACAGGACCGGGCAGGCAAACACGGGGCACAGAAGATCAGGTAAGATGCCGTACCCCACGGCCGCTTGGG
TGGCAGTTAGCCCATACCTCATCTCCCCGTCCGATCGCATCAGGGCCGTCCGTCCGCGGAGGTCCCATCATCATCTGACG
CCGAGGAGTACACCACGGCACCCTCACGTGGCGGGCCCGAGCGGTTACTGTTGTGGTAACAATGGCATCCGGCCCCAATG
CCGGGTCGACACGTTGCCGCTGTTATCACCCTTCGTCGAGTCCCGTCTCACGTGGCGCCTGCAGGCACCCCTTCCCGCTT
CCACGTGGCACCTACAAAGCATAGCCTCAGTCTCTGAGTAAATTGGTTAACAGATGACCATGCGACAAGCGTGGTAAAAG
CAATCTCAAATTGACAAAAATTGGTTAACAGATGAGCTTCACTTACTGTACGACGTAAAAATAAATTTTTTTGCTGGTAG
ACGTA-------------------AAAATATTGCTTTTACTATGTGTAGGTACTGCCAGTACTTCTTTGCG---------
----------GTGCCTATAGTCAAATTAATTTATTCTCATTCT------GTATCAGGGCCAAAGTCGTCGCATTAATTAA
CGAAGTAATCTATGCTTCACACCTGATGGGTGACGGTGGTCCGCGCGCAGATAAAACCCCCTAGCTCCTCCCTTCCTTGC
TTGGCCGGTGGTCGCTTCTACCGCTGCTGCGAAAGCGATACGCCTTCCTTTCCTTCTTCTGGCGAGGGAGCGAGCGAGAG
TGGCCACGCGCGAGTGGGTGGGTGAGCGAGCGAGCGCGTGAGTGGTGGTGGTGGTGGGACGGGAGCGAGCTCTCCTCTCG
TGCGGACATGATGGATCACCTGAGCCTGGTGCCCTACGAGGGAGGCAGCGGCGCCGGGGGCGACGCCGGGGCCAAGTACA
AGGAGTGCATGCGCAACCACGCCGCCGCCATGGGCGGCCAGGCCTTCGACGGCTGCGGGGAGTACATGCCGGCCTCGCCC
GACTCGCTCAAGTGCGCCGCCTGCGGCTGCCACCGCAGCTTCCACCGCCGCGCGGGTAGCCTCGCGGGCGGGGCCTGCCC
GGCGCCCTTCTTCTTCAGCCCGCCCCCGCCGCCGCCCCCGCACCATCACCCGCCGCCGCACCACCCCGTGCTGCAGGGCT
TCCTCCCGTCGGCGCCCCCGCGGCCGCCCCAGCTCGCGCTGCCGTACCACGCCGTGCCCGCCGCGTGGCACCACGCCCTG
CTGGACCCCGCGCGCGCCGGCTCGGAGACGCCTCCCCGGGCGGACGACTGCAGCCCCGGGTGCGGGAGCGGGAGCTTCTC
GAGGAAGCGGCACCGGACCAAGTTCACCCCGGAGCAGAAGGAGAGGATGCGCGCCTTCGCCGAGAAGCAGGGGTGGCGCA
TCAACCGCGACGACGGCGGCGCCCTCGAGCGCTTCTGCCTCGAGATCGGCGTCAAGCGGAACGTCCTCAAGGTCTGGATG
CACAACCACAAGCACCAGCTCGCCTCGCCCACCTCCGTCGCGGCCGGTATGGGCATGGGCATGGGGATGGGCATCGGCAT
CAACCCAGGAGCCCTCGGCACCGGCACTGGGACCGGCGCTGACGCTGGCGTTGGCGTTGGCGGTGGCGTTGGAGCGGGCA
CCGGCGACGGCGACGGCGACGACGACGACACGGACGACGACTCGCCTCCACGCGCCGCCGTCTCGTCGCCCTCCCCCTCC
CCCATCAGCGTCTAGCCGTGCTAGCGCTAGCTAATGAGTACCGAGTTCCTTTAATCCCCAGGGCTTTAGATTTAATTAAT
GCAGTGTCAGTCAGTTGTGAGCAAGCAGGTGGTGTAAACGA-CCCCCTGATCCCCCGCATGCCTCCCCCGCAGCGGCCGT
GCCGTACATCGTGGTACCGGACCGAGGGCATATTTGTACCCCCACTCTAATTCTAGCTAGGCGCCGCTGTTTGTAGCTTC
ATTATCTTTCTTGTCTTGCTTTAATCCTAGTACTACT---------ACCCGTGCTAGACTAGTGTAGTAGCTGCAGTGAG
TGACTAATCATCGTACCCC------TGTCAAGATTAATGCCGCATTAATTTGTCCCTGGACAGTAGAGTGCATCGGGA-T
TTGTGCCTGGAAGCTTCTCTAAATTGCAGTTGCAG---------------------------------------------
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---TGTTTTGGTTTGGTCTGGTCGCACTCGTGTGGCTTTA------------------------------------GGCC
GGAGCGCCACCTCGTAATCGGCCGGCCTGCTCTCCAGCCAGCATC----------GCCTTGGCCGGTGGTGGCCTGAGAT
TTTTGTTCCCATTTGCGCCCTCCGGTCCGGCCGGCCGGGCCGAGTGGTAGGCCGCGCCGCGGTGGTGGAGCCGGCCGGAG
CTTGGCCGAGCACGCC-GCCCGGCTTGGCGCTCTA---CTGCTGCTGTTGCGTGGGGTCGAACGTTGCCCTTGTGTTCGT
CCGTGCCGACTGAGTTGTCTCATCGGCTTGGGAGTGTGGTGTGTGATGATGGCGATTAGGCACGGTCCGTGGCTTTCGGT
GCGGGGCAGGATCCGACACGATCTCTCCGCTCTCCCTTCTCCTTGTCCTCGGTGGGATTTGGCCTCTCGCGCCGCGTGGT
TTTGCTGTCGCCTAAG-CTTTGTGGCTCCGCCGTGTCGCCCGGATCTGGATCCAGCAATGCCCTGTGTTTAGGTGGCAGG
AAACCGGCCCCTGTGTGCATGCAGTGCCCGGTTTGGCTAGGTTTGAGTACGAGCACGTACTCGTCTAGTCTTTCGCTGCT
CGCCATTTGTG
>chr2B_22
---------------------AACATGGACACCGAAATTGGAGAAATCCACGCTGACATTTGAGTCCCGTGACGGGCCAT
ATTTTCTGTGCCGTGTAATTAAATCAGCTGCAAATATCGTCATCTAATTGACAGAGAGC---ACCAAGGTTGGAGCT--A
ACCCCCTGGCAACAGGATTGGGCAGACAAATACTGGGCACAGAAGATCAGCTAAGATGCCGTACCCCACGGCCGCTTGGG
TGGCAGTTAGCCCATACCTCATCTCCCCGTCCGATCGCATCAGGGCCGTCCGTCCGCGGAGGTCCCATCATCATCTGACG
CCGAGTAGTACACCACGGCACCCTCACGTGGCGGGCCCGAGCGGTTACTGTTGTTGTAACAATGGTATCCGGCCCCAATG
CCGGGTCGACACGTTGCCGCTGTTACCACCCATCGTCGAGTCCCGTCTCACGTGGCGCCTGCAGGCACCCCTTCCCGCTT
CCACGTGGCACCGCGCGCAAACGTGATCTCGCCGCCTCATCAACTAGTATCACAAAGCAGCATAGCAGA-----------
-------------------------------------------------------TCA----------------------
----------GTTTTACTGTATGTAAAATATTGCTTTTACTGTGTGTACTGCTG-------CTTCATTGCACTACCTATA
GTCACTAGTAGTACCAATAATTATTCTTATTATTCTGTGAGTACTAGTAGTATGAGGGCCAAAGTCGTCGCATTAATTAA
CGAACTAATTTATGCTTCGCACCTGATGGATGACGGAGGTCTGCGTGCAGATAAAACCCCCTAGCTCCTCCCCTCCTA--
--GGCCGGTGGTCGCTTCTACCGCTGCTGCGAAAGCGATACGCC-----TTCCTTCTTCT--------AGCGAGCGAGAG
TGGCCACCCGCGACCGGGTGGGTGAGC----GAGCGCGTGAGTGGTGGTGGTGGGAA---GGGAGCGAGCTCTCCTCTCG
TGCGGACATGATGGATCACCTGAGCCTGGTGCCCTACGAGGGAGGCAGCGGCGCCGGGGGCGACGCCGGGGCCAAGTACA
AGGAGTGCATGCGCAACCACGCGGCTGCCATGGGCGGCCAGGCCTTCGACGGCTGCGGGGAGTACATGCCGGCCTCGCCC
GACTCGCTCAAGTGCGCCGCATGCGGCTGCCACCGCAGCTTCCACCGTCGCGCGGGTAGCCTCACTGGTGGGGCGTGCCC
GGCGCCCTTCTTCTTCAGCCCGCCTCCGCCGCCGCCCCCGCACCATCACCCGCCGCCGCACCACCCCGTGCTGCAGGGCT
TCCTCCCGTCGGCGCCCCCGCGGCCGCCCCAGCTCGCGCTGCCGTACCACGCCGTGCCCGCCGCGTGGCACCACGCCCTG
CTGGACCCCGCGCGGGCCGGCTCGGAGACGCCTCCCCGGGCGGACGACTGCAGCCCCGGGTGCGGGAGCGGAAGCTTCGG
GAGGAAGCGGCACCGGACCAAGTTCACCCCGGAGCAGAAGGAGAGGATGCGCGCCTTCGCCGAGAAGCAGGGGTGGCGCA
TCAACCGCGACGACGGCGGTGCCCTCGAGCGCTTCTGCCTCGAGATCGGGGTCAAGCGGAACGTCCTCAAGGTCTGGATG
CACAACCACAAGCACCAGCTCGCCTCGCCCACCTCCACCGCGGCCGGCATCGGCATGGGCATGGGGATGGGCATCGGCAT
CAACCCAGGAGTCCTCGGCACTGGCACTGGGACCGGCGCTGGCGCTGGCGTT------GGCGTTGGCGTTGGAGCGGGCA
CCGGCGATGGAGACGGCGACGACGACGACACGGACGACGACTCGCCTCCACGCGCCGCCGTCTCGTCGCCCTCCCCCTCC
CCCATCAGCGTCTAGCCGTGCTAGCGCTAGCTAATGAGCACGGAGTTCTTTTAATCGCCAGGGCTTTAGATTTAATTAAT
GCACTCTCAGTCAGTTGTCAGCGAGCAGCTGGTGTAAACGA-CCCCCTGATCCCCCGCATGCCTCCCCCGCAGCGGCCGT
GCCGTACATCGTGGTACCGGACCGAGGGCATATTTGTACCCCTACTCTAATTCTAGCTAGGCGCCGCTGTTTGTAGGTTC
ATTATCTTTCTTGTCTTGCTTTAATCCTAGTACTACTTGTACTACTACCAGTGCTAGACAAGTGTAGTAGCTGCAGTGAG
TGACTAATCATCGTACCCC------TGTCAAGATTAATGCCGCATTAATTCTTCCATGT-CAGTAGAGTGCATCAGGATT
TTGTGCCTGGAAGCTTCTCTAAGAGCATGGTTAATAGTATAGCCAGCGGCTGGCTATAAGCCAGTGCCATGTCATCTACA
ACCCATCTTATAGCTAACATGTACAATAGTAAATAAAAAAATGTACTACTTTTTTATTATGTGGCCCACCTTTCATTCTC
ACAAAGTGCCTAGGAGCACGTGTTAGAGCTGTCTGTTCACGAAGAGCCCGCTTACCTTCTCTCTCCTCTTCTCTTTCTTC
TAACTAAGCAGAAATATACTAGTTTATTTCTTATAGCCCGCTGACTAAGCTCTATTGTACTTGCTCTAAATTGCAATGTG
TGTTGGTTTGGTTTGGTTTTGTCGTACTCGTGTGGCTTTG------------------------------------GGCT
GGAGTGCCACCTCGTAATCGGCCGGCCTGCTCTCC------------------------------GTGGTGGCCTGAGAT
TTTTGTTCCCATTTGCGCCCTCCGGTCCGGCCGGCCGGGCCGAGTGGTAGGCCGCGCCGCGGTGGTGGAGCCGGCCGGAG
CTTGGCCGAGCACGCCCGCCAAGCTTGGCGTTCTA---CTGGTGCTGTTGCGTGGGGTCGAACGTTGCCCTTGTGTCCGT
CCGTGCCGACTGAGTTGTCTCATCGGCTTGG--GTGTGGTGTGTGATGATGGCGATTAGGCACGGTCTGTGGCTTTCGGT
GCGGGGCAGGATCCGACACGATCTCTCCCCTCTCCCTTCTCCTCGT-------------------------CCTCGTGGT
TTTGTTGTCGCCTAAAACTTCGTAGCTCTGCCGTGTCGCCCGGATCTGGATCCAGCAATGCCCTGTGTTTAGGTGGCAGG
AAACCGGCCCCTGTGTGCATGCAGTGCCCGGTTTGGCTAGGTTTGAGTAC------------------------------
-----------
>chr2D_30
-----------------------------CACCGAAGTTGGAGAAATCCACGCTGACATTTGAGTCCCGTGACGTGCCAT
ATTTTCTGTGCCGTGTAATTAAATCAGCTGCAAATATAATGATC-AATTGACACAGAGAGCAACAAAGATTGGAGCTAGA
ACCCGGTGGCAACAGGACCGGGCAGGCAAACACTGGGCACAGAAGATCAGGTAAGATGCCGTACCCCACGGCCGCTTGGG
TGGCAGTTAGCCCATACCTCATCTCCCCGTCCGATCGCATCAGGACCGTCCGTCCGCGGAGGTCCCATCATCATCTGACG
CCGAGTAGTACACCACGGCACCCTCACGTGGCGGGCCCGAGCGGTTACTGTTGTGGTAACAATGGTATCCGGCCCCAATG
CCCGGTCGACACGTTGCCGCTGTTACCACCCTTCGTCGAGTCCCGTCTCACGTGGCGCCTGCAGGCACCCCTTCCCGCTT
CCACGTGGCACCGCGCGCGAACGTGATCTCGCCGCCTCATCATCAA----CACAAAGCAGCATAGCAGA-----------
-------------------------------------------------------TCAAGATCAGTTTTACTGTTGGTAA
AATATTGTCAGTTTTACTGTTCGTAAAATATTGCTTTTACTGTGTGTACTGCTG-------CTTCTTTGC----------
------AGTAGTGCCTAGAGTCAAATTAATTATTCTGTGAGCA----TAGTATGAGGGGCAAAGTCGTCGCATTAATTAA
CGAACTAATTTACGCTTCACACCTGATGGGTGACGGTGGTCCGCGCGCAGATAAAACCCCCTAGCTCCTCCCCTCCTT--
--GGCCGGTGGTCGCTTCTACCGCTGCTGCGAAAGCGATACGCC-----TTCCTTCTTCTAGCG----AGCGAGCGAGAG
TGGCCACGCGCGAGTGGGTGGGTGAGCGAGAGAGCGCGTGAGTGGTGGTGGTGGGAA---GGGAGCGAGCTCTCCTCTCG
TGCGGACATGATGGATCACCTGAGCCTGGTGCCCTACGAGGGAGGCAGCGGCGCCGGGGGCGACGCCGGGGCCAAGTACA
AGGAGTGCATGCGCAACCACGCCGCTGCCATGGGCGGCCAGGCCTTCGACGGCTGCGGGGAGTACATGCCGGCCTCGCCC
GACTCGCTCAAGTGCGCCGCCTGCGGCTGCCACCGCAGCTTCCACCGCCGCGCGGGTAGCCTCGCGGGCGGGGCGTGCCC
GGCGCCCTTCTTCTTCAGCCCGCCCCCGCCGCCGCCCCCCCACCATCACCCGCCGCCGCACCACCCCGTGCTGCAGGGCT
TCCTCCCGTCGGCGCCCCCGCGGCCGCCCCAGCTCGCGCTGCCGTACCACGCCGTGCCCGCCGCGTGGCACCACGCCCTG
CTGGACCCCGCGCGCGCCGGCTCGGAGACGCCTCCCCGGGCGGACGACTGCAGCCCAGGGTGCGGGAGCGGGAGCTTCTC
GAGGAAGCGGCACCGGACCAAGTTCACCCCGGAGCAGAAGGAGAGGATGCGCGCCTTCGCCGAGAAGCAGGGGTGGCGCA
TCAACCGCGACGACGGCGGCGCCCTCGAGCGCTTCTGCCTCGAGATCGGCGTCAAGCGGAACGTCCTCAAGGTCTGGATG
CACAACCACAAGCACCAGCTCGCCTCGCCCACCTCCACCGCGGCCGGTATGGGCATGGGCATGGGGATGGGCATCGGCAT
CAACCCAGGAGTCCTCGGCACTGGCACTGGGACCGGCGCTGGCGCTGGCGCT------GGCGTTGGCGTTGGAGCGGGCA
CCGGCGACGGAGACGGAGACGACGACGACACGGACGACGACTCGCCTCCACGCGCCGCCGTCTCATCGCCCTCCCCCTCC
CCCATCAGCGTCTAGCCGTGCTAGCGCTAGCTAATGAGTACCGAGTTCTAATAATCGCCAGGGCTTTAGATTTAATTAAT
GCACTGTCAGCCAGTTGTGAGCAAGCAGGTGGTGTAAACGACCCCCCTGATCCCCCGCATGCCTCCCCCGCAGCGGCCGT
GCCGTACATCGTGGTACCGGACCGAGGGCATATTTGTACCCCCACTCTAATTCTAGCTAGGCGCCGCTGTTTGAAGGTTC
ATTATCTTTCTTGTCTTGCTTTAATCCTAGTACTACC---------ACCAGTGCTAGACTAGTGTAGTAGCTGCAGTGAG
TGACTAATCATCGTGCCCTGTCAAGTGTCAAGATTAATGCCGCATTAATTTGTCCCTGG-CAGTAGAGTGCATGGGGA-T
TTGTGCCTGGAAGCTTCTCTAAATTGCAGTTGCAG---------------------------------------------
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---TGTTTTGGTTTGGTCTGGTCGCACTCGTGTGGCTTTAAGCTCTTTTTTTTTTTTGAATGTTGGTGTGGCTTTCGGCT
GGAGTGCCACCTCGTAATCGGCCGGCCTGCTCTCCAGCCAGCATCGCCGCCTCCTGCCTTGGCCGGTGGTGGCCGTAGAT
TTTTGTTCCCATTTGCGCCCTCCGGTCCGGCCGGCCGGGCCGAGTGGTAGGCCGCGCCGCGGTGGTGGAGCCGGCCGGAG
CTTGGCCGAGCACGCC-GCCCGGCTTGGCGCTCTACTGCTGCTGCTGTTGCGTGGGGTCGAACGTTGCCCTTGTGTCCGT
CCGTGCCGACTGAGTTGTCTCATCGGCTTGG--GTGTAGTGTGTGATGATGGCGATTAGGCACGGTCTGTGGCTTTCGGT
GCGGGGCAGGATCCGACACGATCTCTCCCCTCTCCCTTCTCCTCGTCCTCGGTGGGATTTGGCCTCTCGCACCTCGTGGT
TTTGTTGTCGCCTAAAACTTCGTACCTCTGCCGTGTCGCCCGGATCTGGATCCAGCAATGCCCTGTGTTTTGGTGACAGG
AAACCCGCCCCTGTGTGCATGCAGTGCCCGGTTTGGCTAGGTTTGAGTAC------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSS-------S----------S----------------------------------------
----------------------------------S--S--------------------S----S----------------
---------------------------------S----------------------------------------------
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-----S-----------------------------------------------------------S--------------
-------------------------S------------------------------------------------------
------------SSSSSS-S-SSSSS--SSS-SSSSSSSSS--SSSS--S--S-SSS-SSSSSSS--SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-S--S--S-S----SS--S-----S
-SSSS------------------------------------S------SSSSSSSSSSSSS---------S---------
-------------------------------SS-SSSSSSS-S----------S--------------------------
----S----S--------------------------------------------------------------S-----SS
SS------------------------------------------SSSSS-----------S---SSSS------------
------------------------------S-----------------------SSSSSS--------------------
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-------------------------S------------------------------------------------------
--------------------------------------------------------------------------S-----
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------------------------------------SS------------------------------------------
-----------S---------S-------------------S----------SSSSSS----S-----------------
----------S---------------------------------------------------------------------
------------------------------------------------S-------S-----------------------
---S----------------------------------------------------------------------------
----------------------------------------------------------------------------S---
-------------------------------------------------S------------------------------
-----------------------------------------------------------S--------------------
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-------------------------------------------------------------------------------S
----S---------------------------------------------------------------------------
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----------------------------------------------------------------------------S---
-------------------------------SS----------------------------------S------------
----------------------------S--------------S--------------------------S--S------
----S----------S----S--S----S---------------------------------------------------
--------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS
>forward_881
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-------------------------------------------------------------TAGCTCCTCCCTTCCTTGC
T-------------------------------------------------------------------------------
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>reverse_3069
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----------------------------GCTCTCCCTTCTCCTTGTCC--------------------------------
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