>input_sequence_66194
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---ATGTACGGCCGGTGCGGCAACATGACGCACGCCCGCAGGACGTTCGACCATATGCCCGACCGGGACATGGCCTCCTG
GCACCTCATGATCGAGGGCTACGCCGGCAACGGGCTCGGGGACGCCGCGCTGCAGCTCTTCGAGGATATGAAGCGGTGCG
GCATGGCGCCCACCGCGCGCACCTTCGTGCTCGTGCTCGACGCGTGCGCCAACTCGGAGGCCATCGAGGAGGCCTTCCTC
TACTTCGACGCCATGTCCCGGGACCACGGCATCGAGCCTGGCATGGAGCACTACGTCGGGATCATCGAGGTGCTGGGCAA
GTCGGGGCACCTCAACGAGGCCGTGGAGTACATCGAGAAGCTGCCGTTCGAGCCCAACGCCATGATCTGGGAGTCGCTCC
TGAACCTGGCGCGCATGAACGGCGACATTGACCTCGAGGACCGGGCGGAGGAGCTGCTGGTCTCGCTCGACCCCTCCAAG
GCCAACCCCAAGAAGCTCCCGACCCCTCCCCCGAAGCGGCGGCTCGGGATCAACATGCTGGACGGGAGGAACAAGCTGGG
GGAGTACAGGCTGCCGCCCAAGATCGAGAAGAAGGTGGTGAACGAGCAGCGCTACGTCCCCGACACGAGGTACGTGCTCC
ACGACATTGACCAGGAGGCCAAGGAGCAGGCGCTACTGTACCACAGCGAGCGGCTGGCCATCGCCTACGGCCTGATCAGC
ACCCCGGCCAGGACCCCGCTGCGCATCATCAAGAACCTCAGGATCTGCGGGGACTGCCACAACGCCATCAAGATCATGTC
GAGGATCGTGGGGCGGGAGCTCATCGTGAGGGACAACAAGCGGTTCCACCATTTCAAGGAGGGCAAGTGCTCCTGCGGCG
ACTACTGGTGA---------------------------------------------------------------------
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>chr1D_1_TraesCS1D01G443000
CCCGTACGGTTTCTCCCCACCAGAATCCCCATTCTCCGCCTCTCGCC-TCGCCATGGCCGCCGCCGC---------CGCC
ATCCACCGGGCCGCCGGCCCGATGCGCTCCGTCGCGCTCGCCTCCTCCAGGTCCCGCTCTCTCCTCCACCTCCTCANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCAGGG
CCACCC--------------------------------------------------------------------------
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-----------------------------------------------------------------GCCTCCCCCGCCGGC
CAACAACTACTACCAGCAGCCGCCTCCTCCCCCGCCGCGGAACGCCTACCCGCCGCAGCGGCAGGGGCCTCCTCCTCCGC
CGCCGAGGAGCGACTACCCGCCGCAGCGGCAGGGGCCTCCTCCTCCGCCGCCGAGGAGCGACTACCCGCCGCGCCACGGC
TACGGTCCGCCTCCCCCGGCCCCGCCCCCGCAGCAGCA---------------------------------------GCA
G---------CAGCAGCGGCAGGGGCCTCCCCCTCCCCCGCCGCCCCACGGCTACGGGCCGCCGCCGCCTCCCGCCCCGT
CCCCGCAGCGGCAGCAGCAGCAGGGCCCTCTCCCGCCGAAGAACAGTTACCTCCAGCAGCAGCAGCAGCA---GCAGGGG
CCGCCGC---CGCCCGAGCCGGCGGCAGGGCCGGAGAAGCTGATCGCGCTGTGCAGGGAGGGGCGGGCCAAGGAGGCGGT
GGAGCTGCTCGAGAAGGGGGCGCGCGCGGACGCCGCGTCCTTCTACGAGCTCGCCGGCGCCTGCTCCACGCCCAAGCTGC
TCGAGGAGCTCCGCAAGGTGCACGACTACCTGCTCCGCTCGCCCTTCCGGGCCGACCTGCAGGTCAACAACCGGTTCCTC
GAGATGTACGGCCGGTGCGGCAACATGACGCACGCCCGCAGGACGTTCGACCATATGCCCGACCGGGACATGGCCTCCTG
GCACCTCATGATCGAGGGCTACGCCGGCAACGGGCTCGGGGACGCCGCGCTGCAGCTCTTCGAGGATATGAAGCGGTGCG
GCATGGCGCCCACCGCGCGCACCTTCGTGCTCGTGCTCGACGCGTGCGCCAACTCGGAGGCCATCGAGGAGGCCTTCCTC
TACTTCGACGCCATGTCCCGGGACCACGGCATCGAGCCTGGCATGGAGCACTACGTCGGGATCATCGAGGTGCTGGGCAA
GTCGGGGCACCTCAACGAGGCCGTGGAGTACATCGAGAAGCTGCCGTTCGAGCCCAACGCCATGATCTGGGAGTCGCTCC
TGAACCTGGCGCGCATGAACGGCGACATTGACCTCGAGGACCGGGCGGAGGAGCTGCTGGTCTCGCTCGACCCCTCCAAG
GCCAACCCCAAGAAGCTCCCGACCCCTCCCCCGAAGCGGCGGCTCGGGATCAACATGCTGGACGGGAGGAACAAGCTGGG
GGAGTACAGGCTGCCGCCCAAGATCGAGAAGAAGGTGGTGAACGAGCAGCGCTACGTCCCCGACACGAGGTACGTGCTCC
ACGACATTGACCAGGAGGCCAAGGAGCAGGCGCTACTGTACCACAGCGAGCGGCTGGCCATCGCCTACGGCCTGATCAGC
ACCCCGGCCAGGACCCCGCTGCGCATCATCAAGAACCTCAGGATCTGCGGGGACTGCCACAACGCCATCAAGATCATGTC
GAGGATCGTGGGGCGGGAGCTCATCGTGAGGGACAACAAGCGGTTCCACCATTTCAAGGAGGGCAAGTGCTCCTGCGGCG
ACTACTGGTGATCGATGGAACATGGTGCCTGGATGATTTTATCTGATGGAATGTGGTGGCGTGTCGTCGAACCCTGTTTC
TTGCTGTTCTATATGAATATATGTGTCGACAGTCAGGACATGCTTTTAGTGCATAAGCAGTATCAAGATATCTGATGGTA
CTTGGTGCTGGTAGCAGTAGAGACTATCCGTTACTTATAGCTATTTCGCCAGTACTTTTCGAATGCATGATGTCATTTTT
AGCCACTGCCTCTTCGTATGCACCAAAAAACCGTCGCTTCTTGATGCACAAATTAATCTCTTCTTTCATGTGGGTCGTGC
TTGGTATGAGGTTCATGTATTGTTCGTAGGCGAAAGCCGATGACCGACCGCATGATTGTAAGAGGTTCTTTTATCTCAAT
CCCTTTTGGATTAATAAGTAAATGGAAACTAGTCTTGTATATCGATATTCCTTTCTAAGTACTATTTTAAATCAGTATTT
TCTACTCCCTCTGTTCCTAAATATAAGTCTTTTAGAAATTTCAATACGGACTATATCCGGATGTATATAGACATAGTTTA
GATTGTAGATTCACTCGTTTTGCTTCGTATGTAGTCCTTATTGAAATCTCTAAAAAGACTTATATTTAGGAATGAAGGGA
GTATTGGACTGCCTCATTTTTAACGGTACATTGCTGGAAGAAGCCAAGCATGAGCTCACAAAGCTTACACATGTATCGAT
GCATTTTATATGCAGTCACACACGTGGTTATTGCTCTCCGGAACATGCCTTCCGAGCTTCAGGACTTGAGTTTTGACCTC
CGAAACTCAGTCTGTATTATGGACGTTTATATCACTATTGTATCATCGCACGAGAGATATATTTTAGCAGAACACATGTC
ACCTGTTTATGTACATATTTGCCTAGAGCTCCGCGATAATACACGAGCTTTCCCTAGCGGGAGTACTAACAGTTAAGCGC
AATACAGTCAGCATAGTATCAACAGACAGTAGATCACAGTTTACATAACAT
>chr1A_1
CCCGTACGGTTTCTCCCCACCAGAATCCCCATTCTCCGCCCCTCGCCTCCGCCATGGCCGCCGCCGCCGCCGCCGCCGCC
ATCCACCGGGCCGCCGGCCCGATGCGCTCCGTCGCGTTCGCCTCCTCCAGGTCCCGCTCCCTCCTCCACCTCCTCACCCC
CGCCCGCGCCCTCTCCTCGTCCCACGCCTACCACCCCTCCGCCGCCGCCGCCGTCCCCANNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTCCCCCGCCGCC
CAACAACTACTACCAGCAGCCGCCTCCTCCCCCGCTGCGGAACGACTACCCGCCGCAGCGGCAGG---------------
---------------------------------GGCCTCCTCCGCCCCCGCCGAGGAACGACTACCCGCCGCGCCACGGC
TATGGGCCGCCTCCTCCGGCCCCGCCCCCGTCCCAGCAGCAGCTGGATCCTATCCCGCCGTGGAGCAATCACTACCCGCA
G---------CAGCAGCGGCAGGGGCCTCCCCCTCCCCCGCCGCGCCACGGCTACGGGCCGC---CGCCTCCCGCCCCGT
CCCCGCAGCGGCAGCAGCAGCAGGGTCCTCCCCCGCCGAAGAGCAGTTACCTCCAGCAGCAGCATCAGCATCAGCAGGGG
CCACCGCCAGCGCCCGAGCCCGCGGCGGGGCCGGAGAAGCTGATCGCGCTGTGCAGGGAGGGGCGGGCCAAGGAGGCGGT
GGAGCTGCTCGAGAAGGGGGCGCGCGCCGACGCCGCGTCCTTCTACGAGCTCGCCGGCGCCTGCTCCACCCCGAAGCTTC
TCGAGGAGCTCCGCAAGGTGCACGACTACCTGCTCCGCTCGCCCTTCCGGGCCGACCTCCAGGTCAACAACCGGTTCCTT
GAGATGTACGGCCGGTGCGGCAACATGACGCACGCCCGCAGGACGTTCGACCACATGCCTGACCGGGACATGGCCTCCTG
GCACCTCATGATCGAGGGCTACGCCGGCAACGGGCTCGGGGACGCCGCGCTGCAGCTCTTCGAGGAGATGAAGCGGTGCG
GCATGGCGCCCACCGCCCGCACCTTCGTGCTCGTGCTCGACGCGTGCGCCAACTCGGAGGCCATCGAGGAGGCCTTCCTC
TACTTCGACGCCATGTCCCGGGACCACGACATCGAGCCCGGCATGGAGCACTACGTCGGGATCATCGAGGTGCTGGGCAA
GTCGGGGCACCTCAACGAGGCTGTGGAGTACATCGAGAAGCTGCCGTTCGAGCCCAATGCCATGATCTGGGAGTCGCTCC
TGAACCTGGCACGCATGAACGGCGACATTGACCTCGAGGACCGGGCGGAGGAGCTGCTGGTCTCGCTCGACCCCTCCAAG
GCCAACCCCAAGAAGCTCCCGACCCCTCCCCCGAAGCGGCGGCTCGGGATCAACATGCTCGACGGGAGGAACAAGCTGGG
GGAGTACAGGCTGCCGCCCAAGATCGAGAAGAAGGTGGTGAACGAGCAGCGCTACGTCCCCGACACGAGGTACGTGCTCC
ACGACATTGACCAGGAGGCCAAGGAGCAGGCGCTGCTGTACCACAGCGAGCGGCTGGCCATCGCCTACGGCCTGATCAGC
ACCCCGGCCAGGACCCCGCTGCGCATCATCAAGAACCTCAGGATCTGCGGGGACTGCCACAACGCCATCAAGATCATGTC
GAGGATCGTGGGGCGGGAGCTCATCGTGAGGGACAACAAGCGGTTCCACCATTTCAAGGAGGGCAAGTGCTCCTGCGGCG
ACTACTGGTGATCGATCGAATATGGTTCCTG-------------------------------------------------
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>chr1B_1
CCCGTACGGTTTCTCCCCACCAGAATCCCCATTCTCCGCCCCTCGCG-CCGCCATGGCCACCGCCGCCGCCGCCGCCGCC
ATCCACCGGGCCGCCGGCCCGATGCGCTCCGTCGCGCTCGTCTCCTCCAGGTCCCGCTCCCTCCTCCACCTCCTCACCCC
CGCCCGCGCCCTCTCCTCGTCCCACGCCTACCACCCCTCCGCCGCCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCA--------
------------------------------------------------------------ACTACCCGCCTCGCCACGGC
TACGGGCCGCCTCCCCCGGCTCCGCCCCCGCCCCAGCA---GCTGGATCCTATCCCGCCGTGGAGCAATCACTACCCGCA
GCAGCAGCAACAGCAGCGGCAGGGGCCTCCCCCTCCCCCGCCGCGCCACGGCTACGGGCCGCCGCCGCC---CGCCCCGG
CCCCT---CGGCAGCAGCAGCAGGGCCCTCCCCCGCCGAAGAACAGTTACCTCCAGCAGCAGCAGCAGCA---G---GGG
CCGCCGC---CGCCCGAGCCCGCGGCGGGGCCGGAGAAGCTGATGGCGCTGTGCAGGGAGGGGCGGGCCAAGGAGGCGGT
GGAGCTGCTCGAGAAGGGGGCGCGCGCCGACGCCGCGTCCTTCTACGAGCTCGCCGGCGCCTGCTCCACGCCCAAGCTGC
TCGAGGAGCTCCGCAAGGTGCACGACTACCTGCTCCGCTCGCCGTTCCGGGCCGACCTGCAGCTCAACAACCGGTTCCTC
GAGATGTACGGCCGGTGCGGCAACATGACGCACGCACGCAGGACGTTCGACCATATGCCTGACCGGGACATGGCCTCCTG
GCACCTCATGATCGAGGGCTACGCCGGCAACGGGCTAGGGGACGCCGCGCTGCAGCTCTTCGAGGAGATGAAGCGGTGCG
GCATGGCGCCCACCGCGCGCACCTTCGCGCTCGTGCTCGACGCGTGCGCCAACTCGGAGGCCATCGAGGAGGCCTTCCTC
TACTTCGACGCCATGTCCAGGGACCACGGCATCGAGCCCGGCATGGAGCACTATGTTGGGGTCATCGAGGTGCTGGGCAA
GTCGGGGCACCTCAACGAGGCCGTGGAGTACATCGAGAAGCTGCCGTTCGAGCCCAACGCCATGATCTGGGAGTCGCTGC
TGAACCTGGCGCGCATGAACGGCGACATTGACCTCGAGGACCGGGCGGAGGAGCTGCTGGTCTCGCTCGACCCCTCCAAG
GCCAACCCCAAGAAGCTCCCGACCCCTCCCCCGAAGCGGCGGCTCGGGATCAACATGCTGGACGGGAGGAACAAGCTGGG
GGAGTACAGGCTGCCGCCCAAGATCGAGAAGAAGGTGGTGAACGAGCAGCGCTACGTGCCCGACACGAGGTACGTGCTCC
ACGACATTGACCAGGAGGCCAAGGAGCAGGCGCTGCTGTACCACAGCGAGCGGCTGGCCATCGCCTACGGCCTGATCAGC
ACCCCGGCCAGGACCCCGCTGCGCATCATCAAGAACCTCAGGATCTGCGGGGACTGCCACAACGCCATCAAGATCATGTC
GAGGATCGTGGGGCGGGAGCTCATCGTGAGGGACAACAAGCGGTTCCACCATTTCAAGGAGGGCAAGTGCTCCTGCGGCG
ACTACTGGTGATCCATCCAACATGGTTCCT--------------------------------------------------
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>SNPs
----------------------------------------S-------S-------------------------------
-----------------------------------------------------------S----------------SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------
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-------------------------------------------------------------------------SSSSSSS
SSSSSS--------------------------------------------------------------------------
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------------------------------------------------------------------------------S-
-----------------------------------S--------S--------------------SSSSS-SSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S--S----------S----------------------
-----S-------------------------SS-----------------------------------------------
--------------------------------------------S-----------------------------------
------------------------------S-------------------------------------------------
--------------------S-----S-----------------------------------------------------
---------------------------S----------------------------------------------------
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-----------------------------------------------------------S--------------------
------------------------------------------------------------------S-------------
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--------------------------------------S-----------------------------------------
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----------------------------------S---------------------------------------------
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----------------S---------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_41
---------------------AGAATCCCCATTCTCCGCCT---------------------------------------
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>reverse_2257
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----------------GGAACATGGTGCCTGGATGA--------------------------------------------
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