>input_sequence_66166
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------------------------------------------------------------------------CTATAAAT
ACCCCCCGTGGCGGCATCCGCCGCATCCAGGCCACCAGATCGGCTCGATCATATCGCCACGCAAAACCCACCCCAACCCC
CCAAGATCGATC----GATCGATATGAAGATGGTTCGTCTCTGCAGCTCCGACGGCGAGGAGTTCGAGGTGGCGGAGGAG
ACCATCGTCGCGGCGTCGGTGATGATCAAGGACATGCTAGAGGACGGCGAAGTCGCCGTCGGCGTGATCCCGCTCCCCAA
CGTGACCGGTCCCATCCTCTCCCGAGTCCTCGACTACGTCAACAGGCACTTCTCCGACCCCCACGACCACAAAACCTCGT
CCTGCCCCGCCGCCGACGACCCCCTCAGGCGGTTCGACGACTCCTTCGTCCAGGTCGACCAGGACACCCTCTTCGACCTC
ATGCTCGTAAGCAGCCCTCGCGATCTCTCCCTAGCTTCGATTCGATCTAGTTAACTAATTGC---------TAGATCGAT
TGACCTGGAACCCCCGACTTACGTT-------------------------------------------------------
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--------------------------CATGCATGCAGGCTGCCAATTACCTCGACATGAAGAGCCTGCTCGACCTGACGT
GCAAGACGGTGGCGGACCAGATCAGGGGCAGGACCCTCGAGGAGATCCGCAAGAAGTTCAACATCGTCAACGACTACACC
AAGGACGAGGAGCAGGAGGTCCGCAGGGAGAACTCGTGGGCATTCGACTAATCGTCGTCTAGCTTAGCCGCCTGTCCATT
AGATCATCAGCGCGTAGGCTATCTATCGATCGATCCATGGTTTTGATGGGCGTGGTTACTTGATCTAGAGCAGTATACTA
TATATGTTTTGGCTCTCTATCATATGCGCTTTCTCACTCTTCAAAGCAAATCAACGGGGTGACACATGCCTAAGTGAATG
TGCATTCATAATTGGA----------------------------------------------------------------
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>chr4B_1_TraesCS4B01G337400
CATGAACATTTTAAAATTTGGTGAAGTTTTTCCCAAGTTGGAGGAACTTTTTTCAAAATTACTGAACTTATTTTTCAAAT
TTTAAGAAACTTTTTGAAAATTGATGAATTTTTTTAAAATTTGATGCTA---TTTTATTTTTGATGAACT--TTTTTGAA
ATTTGATGAACTTTTTC--ATTTTTATGAACTTTTTTTAAAATCGATGAAAATTTTCAAATTCATAAACTTTTTTCAAAA
TCAATGAACATATTGAAATTTATGATTTTTTAGGTTTTCACAT-TTTTTCATTTTTTAGTAAAGTCAATGGTTGACAATT
CAGCGGCTGACCGGTCAACCCGACCAGTCAGCAGCGAACCTGCCT-AAAATATTAGTAGCAAACCCATCGAAGCAGCGAC
CAACATCGAACGAGTGCCGAGCGAGTGAGCGCGTGTTGGGCCGGCGCAAGTCACGGCTACGTGAGCGCCCCTTCCGTGAA
CGGGCGCCTGAAGCGTCGTATAGGAGCTCCCGGAGGTCTCCGAAGGGACTCC-CCTAGCGAACCATTTTCGTTCGCTTGA
ACATTCCCATGGAACAATTTGTTCGCACAAGAACCTGCTCAGGCAACGCGTTCACCCGATATTATGGTCCAAAAAAATAA
AACTCTCATTTAATAACTGTGCAAACATGATGATCAGCTACATACGAATACGATCAACATAGTTTACCATTTATT-----
----------TTTAATCAGTTATGCATGCATACACCGTTTT-----GGGCAAGTTGTATGGCCGGCTCTCGTAGTGCTGT
TCGTGGACGGGTCCGTATGAGTCCACAGACAAATAGTGTGTTTGTTTGGAGGGTCGGCATGGAGATCGATGATCACGATC
TGCAAAGTTTGCCATTTATTTAGAAAAAAAAGACC--TCTTTGACTAGGTATGCATGCATGCACCGCCTCCAGATTTTCA
CGGAAGTTGATTGACAACCATTCCCATCTGGACTTCTGGAGTCGGCGGCGCCGACATCGTCGCCCCGCTAGCCTATAAAT
ACCCCCCGTGGCGGCATCCGCCGCATCCAGGCCACCAGATCGGCTCGATCATATCGCCACGCAAAACCCACCCCAACCCC
CCAAGATCGATC----GATCGATATGAAGATGGTTCGTCTCTGCAGCTCCGACGGCGAGGAGTTCGAGGTGGCGGAGGAG
ACCATCGTCGCGGCGTCGGTGATGATCAAGGACATGCTAGAGGACGGCGAAGTCGCCGTCGGCGTGATCCCGCTCCCCAA
CGTGACCGGTCCCATCCTCTCCCGAGTCCTCGACTACGTCAACAGGCACTTCTCCGACCCCCACGACCACAAAACCTCGT
CCTGCCCCGCCGCCGACGACCCCCTCAGGCGGTTCGACGACTCCTTCGTCCAGGTCGACCAGGACACCCTCTTCGACCTC
ATGCTCGTAAGCAGCCCTCGCGATCTCTCCCTAGCTTCGATTCGATCTAGTTAACTAATTGC---------TAGATCGAT
TGACCTGGAACCCCCGACTTACGTT-------------------------------------------------------
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--------------------------CATGCATGCAGGCTGCCAATTACCTCGACATGAAGAGCCTGCTCGACCTGACGT
GCAAGACGGTGGCGGACCAGATCAGGGGCAGGACCCTCGAGGAGATCCGCAAGAAGTTCAACATCGTCAACGACTACACC
AAGGACGAGGAGCAGGAGGTCCGCAGGGAGAACTCGTGGGCATTCGACTAATCGTCGTCTAGCTTAGCCGCCTGTCCATT
AGATCATCAGCGCGTAGGCTATCTATCGATCGATCCATGGTTTTGATGGGCGTGGTTACTTGATCTAGAGCAGTATACTA
TATATGTTTTGGCTCTCTATCATATGCGCTTTCTCACTCTTCAAAGCAAATCAACGGGGTGACACATGCCTAAGTGAATG
TGCATTCATAATTGGAACAAACTATATATAGGGAAGCACACGGCGCATCAGACACACTCAGAGATTCTCACCAGTTCAAC
TCAATTTTAGCTCCCTCTACATTTAATTTAGGCAAGTGGTGAATAAATTTTTATACTAATTGGTGAGTTTCACTGGAGGC
CATGCATCTTATCTAATACTCCCAAACGTCTTATATTTGTTTACAAAAGGAGTACTAGTTTGTGTTGATTCTTTTTGACT
CTTAAGAATCTAAATCTGGAATGCCCAACCCCCAATCCTTGTGGGAAAACAAGATAACCTATTTGGCCAATCTATGTTTC
TTTGATGTTGGCCAATCTCTATTTATTACGGTTTGTCTTGATTCTTACTGACTTGACATGATTTTGGGTGTAGTCCTCGT
CCTATGCCTCCTCCTCCTCCTTGGCTCCGGTCCGCCTCAATGCGGCGACACCATTAATGAGAGGAGGCAATTAGCGGCTG
TATTTTCCATCATCTCACAAATAGGATTTTCTTATCATGTGGGACACCGACATTCTCGCTTCCGCTTCGACGACGCCCCG
CTTTTGCAGTTGCTTCCCTTTAAGGAAGTACACGCCCCTTTGTCACCCACTACTATTCACCTCCCCTCCTCTTTGTCCAC
GCCAGCCACTGTAGCATCACTTGTGTTCTTTATCTAGCTTTCTAGGCCCTCTCTTGGTGGACACGGTAGGATATGGTTTA
GTCTAGGTGAAGGCATGGAAGAAGGTGGGCAGCTACCGACGATGTGGGCGAGAGAGAAGAGGGATATGGCGGTAGGTGAG
ATTTCATTGGAGCAGAGGCCATTGGAATTGAGGGCTATGGGGCAAAATGTGAGGGCCCAATTTTTTTCTAAGAGTTGTAC
TATGTGCCTTGTTGAAGCACTAATTCGAGGGTTACCGGGTTCCATTGGTAATTAATCATTAGTTACTAATCTTTTTTTGT
GGGAAACTTTGGAAGCTTTATTCAACAAAAGCGGCACTCGAGCAGTCAGCCAGAAG
>chr4D_50
-------------------------------------------------TTTTCAAATTTTATGAATTTTTTTCAAATTG
GAGG---AACTTTTTCAAATTTGATTATCTTTTTTCAAAATTTATGATCTTTTTTAATTTTCGATGATTTTGTTTTTCAA
ATTCGATGAACTTTTTTCAATTTTTATGAACTTTTTTCAAAATCGATGAACTTTTTTTAAATTCTT---TTTTTTAAAAA
TGCATGAACATCTTGAAACTCATGATTTTCCCCTTTTTTCTCGGTTTTTCATTTTGTACTAAAGTCAATGGTTGACAATT
CAGCGGCTGACCGGTCAACCCGACCAGTCAGCAGCGAACCTGCCTAAAAAAATCAGCAGCGAACCCAGCGAGGCAGGGAC
CAACAGCTAACAAGTGCCGAGCAAGCGAGCGCGCGTTGGGCCGGCCCAAGTCGCGGCTCCATGAGCGCCCCTTCCGCGAA
CGGGCGCCTGAAGCGCTGTATAGGAGCTCCCAGAGGTCTCCGGAGGGACTCCTCCTAGCGAACCATTTTCATTCGCTTGA
ACACT--CATGGATCAATTTGTTCGTACAGGAATCTCCCCAGAGGACGCGTTCACCAGATATTGTGGTCCCAATAAA---
AACTCGCATTTAATAGAAGTGTAAACATGATGATCAGCTAC------ATATGTTCAACACAGTTTACCATTTATTTAGAC
AAAAGAGACATTTAATTAGTTATGCATGCATGCATGCACCATCTCCGGGCAAGTTGTATGGCCGGCTCCCGTATTACTGT
CCGTGGACTGGTCCGAATGAGTCCACAG----------------------------------------------------
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>chr5A_838
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-------------------------------------------------------------------GATAATCACGACC
T--AAAGTTTGCCATTTGTTTAGAAGAAGAAAAAACGTCTTTGACTAGGTATGCATGCATGCACCGCCTCCAGATTTTCA
CGGAACTTGATTGACAACAATTCCCATCTGGA--------GTCGGCGGCGCCGACATCGTCGCCCTGCTAGCCTATAAAT
ACCATCCGTGGCGGCATCCGCCGCATCCATTCCACCGGATCGACTCGATCATATCGCCACGCAAAACCCACCCCAAACCC
CCGAGATCCATC----GATCGATATGAAGATGGTTCGTCTCCGCAGCTCCGACGGCGAGGAGTTCGAGGTGGCGGAGGAG
ACCATCGGCGCGGCGTCGGTGATGATCAAGGGCATGCTAGAGGACGAC---GTCGCCGTCGACGTGATCCCGCTCCCCAA
CGTGACCGGCCGCATCCTCTCCCGCATCCTCGACTACGTCAACAGGCACTTCTCCGACCCCGTCGGCGTC---ACCTCGT
CCTGCCCCGGCGCCGACGACACCCTCAGGCGGTTCGACGACTCCTTCGTCCATGTCGATCAGGACACCCTCTTCGACCTC
CTCCTCGTAAGCAGCCCACACGATCTCTCC----CTTCGATTCGATCTAC---TAGTTAACTAGCTGCTAGTAGATCAAT
TGATCTGGACCCCCGCTGTACGTTCATGCTGTTGGAGCCGACTCTCTCAGCCCTCTTCTCTCTTGGTTGTTTCACACAAC
ACACACAAGAACACAAGGAATTTTGGTGCCGTACTGTGTCACACAGCCGACGTTTTCCCCTCTCTATATTTCTTCTTGTA
CCAAAACAAATATGCTTTACAGCCCTTAAGTAGTACTCACGCACGCAGACCGGGCACTACACTTGCCCACTAACCAGCCC
ACGCATGCACTAACCCAGGCCACTAACAGCACACGCACACATGCAGCTAACAAGAATTGACCTTATCTAACTACGGACCT
TTTCTCAAGGTCACAACGGATTCACCCATCCATCGGCTTCAACTTGTGCAGGCCGTTGGCTTGAGACCATCATGCACCAT
CGTCTCACACGGCAAGCTAGCCAGCTTCACGCGGCAGCTCGGACTTTCTCCATGCATGCTTCTCCTATCTGAAACTACTG
ACTCGTACGTATCACACGTACCTCCGTACACACACATTTTTCTACCTGCAACTACTACATGCAAGACTGAAATAAACATG
AAGATACATGATCAAGATTAAAAAGCTAACAATGTCCTCCCTAATCTTGATCCTTTACTTGTGACACAGCTTCAGAGAAG
AGCTGGCTCATCCTCGACACCGAGCAGTGCCTTCTCCTCGTTGTCCTTCTTCTTCTCCGGACACTCCCAGGCAAAATGCC
CAAAGTCATCACAGTTATAGCATTGTACCTCACTCTTGTCTCTGCGCCCTCCACCACGGCCATGTCGGCGGCCATGGCCA
CGGCCACCATGGCCGCGTCCTCGCGATGAGTCATGCCCTCTCGCCATGAGGAGTTGCTCTTCTTCACGTGCCGTCTCCCG
CCCCTTGACGAGCTCCTCATGCGCCTTAAGTGAACCAATGGCCTCCTCCATGGCCATCTTGTTGGTGTCGCTGAACAATG
CAATCGATGACGCAACGTGGATGAACTTGTTGGAGACGGATCAGAGCAGCTTCTTCACGACGTACTTCTCCTCCATCGCA
TTACCAAGCTCACGAATGCGCCCCACGAGCGTCGTGAACCTCGCCGCGAAATCATCCACGGACTCCACATCACTCATCTT
GAGGCCATCAAATTCCGAGCGCAAGGATTGAACCCTCGCCTCTCGGACGCGCTCGACGCCCACATGCATGGAGCGTAGCG
CCGCCCACACATCGGCTGCGGTCTCCTTCTCCGCAACTCGCAGCAGCGTCGTGTCGTCGATGGACTGGGAGATGATCGTC
ATGGCCATCTCCTCCTTGTCCTTGTCGACCTCCGATGAGGCCCCATGATCAACGGCGCCCCACACGCCATTGGCGCGCAA
GAGGTATTTCATCCTCATCGCGCACGCAGCGTAGTTCGGTCCTCGTGAGCAGCAGGAATGGGAGCTTCCCCGCCGCCGTC
GTCGCCGCCGTCGCGGCAGCCGCCATCGCCGCCGAGTCGCTCGGCACCAACGCTTCACTCGCTGAAGAGTCACGCGGCAT
CGTCTTCGTCATCACCTAGCGCTGATACCAAATGTTGGAGCCGATTCTCTCAGCCCTCTTCTCTCTTGGTTGTTTCACAC
AAGAACACAAGGAATTTTGGTGCCGTACTGTGTCACACAGCCGACGTTTTCCCCTCTCTATATTTCTTCTTGTACCAAAA
CAAATATGCTTTACAGCCCTTGAGTAGTACTCACGCACGCAGACCGGGCACTACACTTGCCCACTAACCAGCCCACGCAT
GCACTAACCCAGGCCACTAACAGCACACGCACACATGCAGCTAACAAGAATTGACCTTATCTAACTACGGACCTTTTCTC
AAGGTCGCAACGGACTCACCCATCCATCGGCTTCGAACTTGTGCAGGCCGTTGGCTTGAGACCATCATGCACCATCGTCT
CACACGGCAAGCTAGCCAGCTTCACGCGGCAGCTCGGACTTTCTCCATGCATGCTTCTCCTATCTGAAACTACTGACTCG
TACGTATCACACGTACCTCCATACACACACATTTTTCTACCTGCAACTACTACATGCAAGACTGAAATAAACATGAAGAT
ACATGATCAAGATTAAAAAGCTAACACATGCATGCAGGCTGCCAATTTCCTCGACATGCAGAGCCTGCTCGACCTGACGT
GCAAGGCGGTGGCGGACCAGATCAGCGGCAGGACCCTCGAGGAGATCCGCAAGAAGTTCAACATCGTCAACGACTACACC
AAGGATGAGGAGCAGGAGGTCCGCAGGGAGAACTCGTGGGCATTCAATTAGAGTAC------------------------
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--TATGTTTTGGCTCTCTATCATATGCGCTTTCTCACACTTTAAAGCAAATCAACGTGGGGTTTCATGGCTACGTGAATG
TGCATTCATAATCGGAACAAAGTATATATAGGGAAGCACAAGGCGCGTCAGACACA------------------------
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>chr4D_872
AGAAAA--------------------------------------------------------------------------
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--------------------------AAAACGACC--TCTTTGGCTAGGTATGCATGCATGCACCGCCTCCAGATTTTCA
CGGAACTTGATTGACAACAATTCCCATCTGGA--------GTCGGCGGCGCCTACATCGTCGCCCTGCTAGCCTATTAAT
ACCATCCGTGGCGGCATCC---------AGTCCACCTGGTCGACTCGATCATATCGCCACGCAAAACCCACCCCAAACCC
CCAAGATCGATCTATCGATCGATATGAAGATGGTTCGTCTCCGCAGCTCCGACGGCGAGGAGTTCGAGGTGGCGGAGGAG
ACCATCGGCGCGGCGTCGGTGATGATCAAGGGCATGCTAGAGGACGAC---GTCGCCGTCGTCGTGATCCCGCTCCCCAA
CGTGACCGGCCCCATCCTCTCCCGCATCCTCGACTACGTCAACAGGCACTTCTCCGACCCCCACAACGTC---ACCTCGC
ACACCCCCGGCGCCGACGACCCCCTCAGGCGGTTCGACGACTCCTTCGTCCAGGTCGACCAGGACACCCTCTTCGACCTC
ATGCTCGTAAGCAGCCCTCACGATCTCTCT----CTTCGATTCGATCTAGGAGTAGTTAACTGCTA-----------GAT
TGATTTGGAACTCGCGATGTACGTT-------------------------------------------------------
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------------------------------CATGCAGGCTGCCAATTACCTCGACATGCAGAGCCTGCTCGACCTGACGT
GCAAGACGGTGGCGGACCAGATCAGGGGCAGGACCCTCGAGGAGATCCGCAAGAAGTTCAACATCCGCAACGACTACACC
AAGGATGAGGAGCAGGAGGTCCGCAGGGAGAACTCGTGGGCATTCAATTAGAAGCCGTCTAGCTATTT-GCTTGTCCATT
TGATCATCACTGCGTAGGCTATCCATCGGTCGATCCACGGCTATGATGGGCCTGGTTACTTGATC---------------
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>SNPs
SSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S--SS----S--S---SSS-SSS
SSSSSSS--------S---S-----S-SS------S---S--S---S-S------S-----S-----SS--------S--
---S------------S--------------------S------------SS----SS--S-SS-SSSS------S----
-SS--------S------S-S--------SSSSS----SSSSS------------S--S---------------------
--------------------------------------------------S--S--S---S------S---S----S---
-----S-S---S----------S--S-------S-----------S------S-----S-S---------------S---
---------------SS--------------S----------S---------------------------S---------
---S-SS------S-----------S---S---S--S-S---SSS-----------S------S------S--S---SSS
-----S---------SSS---S-------------------SSSSSS---S-S------S--------------------
----------------S--------------S--SSSSSSS---------------------------S----S-S----
S-------S------S------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S-------S-
-SS--------------S-------S------------------------------------------------------
-----S------------S-------------SSSSSSSS-------------------------S--------------
---SS-------------------------S-----S-----S---------------------------------S---
-----------------------------------------S--------------------------------------
-------S-----------------------S--------------S-SSS----------S------------------
---------S--------------SS-----------------------------------------SS-SSS-------
---------S----------------------------------------------------------------------
-------------------S----------SSSS----------------SSSSSSSSSSSS------------------
---S-------------S--------------------------------------------------------------
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----------------------------------------------------------S---------------------
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-----S---------------------------------------S-S--SSS-S---------SSSSS--S--------
S--------SS------------S----S--------S--S-S--------S-------------SSSSSSSSSSSSSSS
SS-----------------------------------S---S--------------S--S-SSS----S---S-------
------------S--------S------------------S-----S---------SSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_860
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----------------------------------------TTTGTTTGGAGGGTCGGCAT--------------------
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>reverse_4583
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----------------------AGGAAGTACACGCCCCTTTG--------------------------------------
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