>input_sequence_66158
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-------------------------------------------ATGGCGCTCGCCTCCACCTCCGCCACCGCCTCCGCGG
CCGTGCTCAAGAACCCGTTCCTCGGCGCGAGGCGCGCGCTCGCCAATGCCGCCTCCCTCGGCGCCGCCAAGCCCGTGACG
CGCCGCGTGGTGGTCGTCGCCGCGGCCGTCGGCAAGAAGTCGTGGATCCCCGCGGTCAAGAGCGATGCCGAGTTCATCAA
CCCGTCCTGGCTCGATGGCTCGTAAGTCTTCCTCGTTCGTATTGTTTCTCTTCGTTCGTCGCGCTGCATTAATCCCACTC
TACGCGGGGGGAGGCCTCCATGCATGGCAGCAACTCTGAGACTCACTCAACGCGTACGTGCAGGCTCCCCGGTGACTTCG
GCTTCGACCCGCTGGGGCTTGGCAAGGACCCGGCGTTCCTCAAGTGGTACAGGGAGGCCGAGCTGATCCACGGGCGCTGG
GCGATGGCCGCCGTGCTGGGCATCTTCATCGGGCAGGCGTACAGCGGCGTGCCGTGGTTCGAGGCCGGAGCGCAGCCAGG
CGCGGTGGCGCCCTTCTCCTTCGGGTCGCTCCTGGGCACCCAGCTGCTGCTCATGGGGTGGGTGGAGTCCAAGCGGTGGG
TCGACTTCTTCAACCCGGACTCCCAGTCGGTGGAGTGGGCCACGCCGTGGTCGCGCACAGCCGAGAACTTCGCCAACTTC
ACCGGCGAGCAAGGGTACCCGGGCGGCAAGTTCTTCGACCCGCTCGGCCTCGGTGGCGAGACCAAGGACGGCGTCTACAT
CCCCGACACCGAGAAGCTCGAGCGGCTCAAGGTGGCCGAGATCAAGCACTCGCGCCTCGCCATGCTCGCCATGCTCATCT
TCTACTTCGAGGCCGGACAGGGCAAGACGCCGCTCGGCGCGCTCGGCCTATAA---------------------------
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>chr2A_1_TraesCS2A01G342600
AATGACAAAAAGAACTAGCAGCTTGCTCTATCGACTGACACACACACAAAAACCTAAAGGATCACTCCAAAATTTAAACT
GTGTAAAAACTATCAACACTTTCACTAAATATGGCAATCTAGAATGAAAAACATTCTAGCGTTAAAAGGTCAAAACAGAA
GGTAATAACTAAGATTCTCTCTAAATCTAGTTATATGCATTCTGCACAAAACTGAAATTTACTCTATATCAAATTGTATG
CATTTTGCCCTAAATAAAAGGTTAGCTAGGCGTAAGGTCTTTCGTTAAAAACAAGAGGAAAAAGAAATCCAGCATGTTAT
GTTGGATGGCAACACACATGTGTGAGCTTGTGTTAAGCGCCTTGATGATCTAATGCATATCTCTTGGAAACGATGAAGAA
TATGTTTTTAACATAGGACTTGAACTCTGGTGTGTTGAAGATGCCACTGTTTTTTTAATCATTTAACCACAGATCGGTTC
GCACGATGAAGGATATTTTGATGGTAGAAAATAGTACCATATTGCGTTCTATGTG--TCTAAAAAAAAGTTGCATTATAT
GTGCGGTATGTCATACCATCTCCAAAGGTGACCGTCATCGTGTGCGAAACGACTCCTTGGCAATTATAACGCCCGTGGAT
GGATGGATCGGATCTTCTTTCACTATTCACCACGGAGATCCTACGACACGGTCCGATTGGCAGGCAGTCCCCACAGATCA
CAAGGAGCATC-AAAGCCCAGGATATTGTCCACGCGGCGTCCACCGGCGCAGCAGAATCCGATGGCGCCAGCTCCCCATT
GGCCAGCGCTCTATCCATCCTACCACCCCAGGATTTCCCAGCCCACATCTTGTGGCTGCCCTGCGCCGCAACGCCACGAT
TTAACATCAAAACCGTCGTGGCATCCTGCAAATCCTGCGCGCTCCAACAGACGTCCTTAGCTGCCACTCCGCCGCGCGCG
TCAGCGACCTCACCGTCACACCGGCGAAGCAAGACCCGCACCCATGGCGCTCGCCTCCACCTCCGCCACCGCCTCCGCGG
CCGTGCTCAAGAACCCGTTCCTCGGCGCGAGGCGCGCGCTCGCCAATGCCGCCTCCCTCGGCGCCGCCAAGCCCGTGACG
CGCCGCGTGGTGGTCGTCGCCGCGGCCGTCGGCAAGAAGTCGTGGATCCCCGCGGTCAAGAGCGATGCCGAGTTCATCAA
CCCGTCCTGGCTCGATGGCTCGTAAGTCTTCCTCGTTCGTATTGTTTCTCTTCGTTCGTCGCGCTGCATTAATCCCACTC
TACGCGGGGGGAGGCCTCCATGCATGGCAGCAACTCTGAGACTCACTCAACGCGTACGTGCAGGCTCCCCGGTGACTTCG
GCTTCGACCCGCTGGGGCTTGGCAAGGACCCGGCGTTCCTCAAGTGGTACAGGGAGGCCGAGCTGATCCACGGGCGCTGG
GCGATGGCCGCCGTGCTGGGCATCTTCATCGGGCAGGCGTACAGCGGCGTGCCGTGGTTCGAGGCCGGAGCGCAGCCAGG
CGCGGTGGCGCCCTTCTCCTTCGGGTCGCTCCTGGGCACCCAGCTGCTGCTCATGGGGTGGGTGGAGTCCAAGCGGTGGG
TCGACTTCTTCAACCCGGACTCCCAGTCGGTGGAGTGGGCCACGCCGTGGTCGCGCACAGCCGAGAACTTCGCCAACTTC
ACCGGCGAGCAAGGGTACCCGGGCGGCAAGTTCTTCGACCCGCTCGGCCTCGGTGGCGAGACCAAGGACGGCGTCTACAT
CCCCGACACCGAGAAGCTCGAGCGGCTCAAGGTGGCCGAGATCAAGCACTCGCGCCTCGCCATGCTCGCCATGCTCATCT
TCTACTTCGAGGCCGGACAGGGCAAGACGCCGCTCGGCGCGCTCGGCCTATAAGACGATTTTT-GGCTTGCGCGCGTGGT
GGGAGAGGGGTTGTTGCATTGCATCAG----GACGCATGGATTGCATGGGATCGGCTGGAGGTCGAAGAAGCAGCAGCAA
TGTATGTGTGTCCGTGACTTCTTTGGGGTAGTGTGTGTAAATCGAATGGGGAATCAAGTACTCTTTATTTCTCCAGCGTA
TGTACCATGTA--ATATATAGTCTGAGCTCTGTAATTTAAGGCAGAATGAGCAAGGGCATTTGATTCATCACCTACCAAG
TCTTTTA---GAACACTGCTGGCATATTTAAACAACCCGCAAAAAGAAGAAAAAATTGCATCAGTTGAAGGAAGCACGAA
AACTAGCAAAGTCTGAACTGCTCAGCGCAAGATAGGATCACGAGATTCATCTAAAAATAATGCAGTGAGTACCAGTCGAA
CAGGAACAGGTGTTGGCTCTGAAAACATATTATAACACAGAATATATTAACAGGAGCACTATTCCTGAA-C---------
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-----------------------------------CTGAAACAGAGGAAAATTAGGAATAAATAAAGAAACAGAGGTGTT
GCATTCCACGTTCGCAGGGTTCTTTGCAAACTTTCCTACAGAGTTCATCTCAAAATTGCCATGTATTTACCAAAAGCAAC
TGTAC--------CATAGGTGCCAAAGTAGCACCCAGCGACATTGTTAATCCA-AAAACAGTATCCTCTGGTGTCTAGAC
TGAATCTAATACCCTCTTTGAGGTTGGTATAAGGGCAGGATTGATG----------------------------------
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----------------------------------------------------AAATTCTGCTAGAGTTAGCAGACATTTG
GAGTAAATAGGAGACTACAGCGGGAGAAAGGTCTAGGGATAGGGATATTATGGAGGATGACACAAACACTGCTTACTTCC
ATGTTGTAGCTAATCAGAGGTGAAGGAAAAACTGATTAGTGTTCTAGATGGACCTGAGGGACCTGAGGGCTCTGGACTAT
TATAAGGAGTTACTTAGATATGTACACAGACCTAATATCTCTCTTAAGAGTGATTTCTATGGAGAGGACGAGAAAATTTC
TGT
>chr2D_7
------AAAAAGATCTAGCAACTTGCTCTATCGACTGACACACACA--AAAACCTAAAAGATCGCTCCAAAATTTATACT
GT--AAAAACTATCAAAACTTTGACTAAATATGGCAATCTAGAATGAAAAACGTTCTAGCGTTAAAAGGTCAAAACAGAA
GGTAATAACTAAGATTCTCTCTAAATCTAATTATATGCATTCTGCACGAAACTGAAATTTACTCTAAATCAAATTGTATG
CATTTTGCGCTAAATAAAAGGTTAGCTAGGCGTAAGGTCTTCCGTTGAAAGAAAAGGAAAAAAGAAATCTAGCATGTTAT
GTTGGATGGCAACACGCATGTGTGAGCTTGTGTTAAGCGCCTTGATGATCTAATGCATATCTCTTGGAAACGATGAAGAA
TATGTTTTTATCATAGGACTTGAACTCTGGTGTGTTGAAGATGCCACTGTTCTCCTAATCATTTAACCACAGATCGGTTC
GCACGATGAAGCATATTTTCATGGTAGAAAACAGTACCATATTGCGTTCTATGTGCCTCAATAAAAAAGTTGCATTCCAT
GTGCGGAATGTCATGCCATCTCCAAAGGTGACCGTCATCCTGTGACCG----------GGCAATTATAACGCCCGTGAAT
GGATGGATC-GATCTTCTTTCACTATTCTCCACGGAGATCCTACGACACGGTCCGATTGGCAGCCAGTCCCCACAGATCA
CAA-GAGCATC-AAAGCCCAGGATATTGTCCACGCGGCGTCCACCGGCGCAGCAGAATCCGATGGCGCCAGCTCCCCATT
GGCCAGCGCTCTATCCATCCTACCACCCCAGGATTTCCCCGCCCACATCTTGTGGCTGCCGTGCGCCGCAACGCCACGAT
TTAACATCAAAACCGTCGTGGCATCCTGCAAATCCTGCGCGCTCCAACAGACGTCCT-AGCTGCCACTCCGCCGCGCGCG
TCAGGGACCTCACCGTCACACCGGCGAAGCAACACCGGCACCCATGGCGCTCGCCTCCACCTCCGCCACCGCCTCCGCGG
CCGTGCTCAAGAACCCGTTCCTCGGCGCGAGGCGCGCGCTCGCCAATGCCGCCTCCCTCGGCGCCGCCAAGCCCGTGACG
CGCCGCGTGGTGGTCGTCGCCGCGGCCGTCGGCAAGAAGTCGTGGATCCCCGCGGTCAAGAGCGATGCCGAGTTCATCAA
CCCGTCCTGGCTCGATGGCTCGTAAGTCTTCCTCGTTCGTAGTATTTCTCTTCGTTCGTCGCCCTGCATTAATCCCACTC
TACGCGAGGGGAGGCCTCCATG----GCAGCAACTCTGAGACTCACTCAACGCGTACGTGCAGGCTCCCCGGTGACTTCG
GCTTCGACCCGCTGGGGCTTGGCAAGGACCCGGCGTTCCTCAAGTGGTACAGGGAGGCCGAGCTGATCCACGGGCGCTGG
GCGATGGCCGCGGTGCTGGGCATCTTCATCGGGCAGGCGTACAGCGGCGTGCCGTGGTTCGAGGCCGGAGCGCAGCCTGG
CGCGGTGGCGCCCTTCTCCTTCGGGTCGCTCCTGGGCACCCAGCTGCTGCTCATGGGGTGGGTGGAGTCCAAGCGGTGGG
TCGACTTCTTCAACCCGGACTCCCAGTCGGTGGAGTGGGCCACGCCGTGGTCGCGCACAGCCGAGAACTTCGCCAACTTC
ACCGGCGAGCAAGGGTACCCGGGCGGCAAGTTCTTCGACCCGCTCGGCCTCGGTGGCGAGACCAAGGACGGCGTCTACAT
CCCCGACACCGAGAAGCTCGAGCGGCTCAAGGTGGCCGAGATCAAGCACTCGCGCCTCGCCATGCTTGCCATGCTCATCT
TCTACTTCGAGGCCGGGCAGGGCAAGACGCCGCTCGGCGCGCTCGGCCTATAAGACGATTTTTTGGCTTGCGCGCGTGGT
GGGAGAGGGGTTGTTGCATTGCATCAGATCGGACGCATGGATTG-ATGGGATCTGCTGGAGGTCGAAGAAGCAGCAGCAA
CGTATCTGTGTCCGTGACTTCTTTCGGGTGGTGTGTGTGAATCGAATGGGGAATCAAGTACTCTTTCTTTCTCCAGCGTA
TGTACCATGTAATATATATAGTCTGAGCTCTGTAATTTAAGGCAGAATGAGCAAGGGCATTTGATTCATCACCTACCAAG
TCTTTTACTAGAACATTGCTTGCATATTTAAACAACCCGCAAAAAAAA--------TGCATCAGTTGAAGGAAGCACGAA
AACTAGCAAAGTCTGCACTGCTCAGCGCAAGATAGGGTCACGAGATTCATCTAAAAATAAAGCAATGAGTACCAGTCGAA
CAGGAACAGGTGTTGGCTCTGTAAACG--TTATAATACAGAATATATTAACAGGAGCACGCATTCCTGAGC---------
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-----------------------------------CTGAAACAGAGGAAAATTAGGAATAAATAAAGAAACATAGGTGTT
GCATTCCACGTTCGCAGGGTTCTTTGCAAACTTTCCTACAGAGTTCATCTCAAAATTGCCATGTATTTACCAAAGGCGAG
TGATCTGCGCCGGCGCGCCGGTCCAAAGTTTAGTCCGGTCGCGCCCTAGCTGCAGGATGCCACTATTCCTAGCCGTTTGA
TCTAGCAAAAAAATATATTATTCGCCCCAGATCTTCTTTCTCCTCACGCATCTTACGCTCGCGCAGCACCCTGCATCTAG
CCGTCTCGCGCTGCTCCCCTTCAGTGGACGTCCTCGTCGCCGGTCCCCACCCTCGCCGGCCGTCCTCGTCGCCAGTCCAT
ACCCTCGCCGTCCGTCCTCGTCGCTGCCTCGACCCATGCAACAGCTCCACCTGTGGTTGCAGCTCTCAACGGCGACGATT
GTAGCTCTGTTTGTAGCTCCGCCGCCGCCCCTCGCTGTTGATGCTCGCTGAACGGAATTGCGTCGACGACGCCCACCAGT
CAATCAACGTCGTTGAATGGATGTAGCAAAAAACTTCGCCTGTCGTAGCAAAACCCGACTATGGCTGCAGCAAATGTCCA
TCATCGTCATCGCGAGGTCACATCTCCGCCTTGACGGATGTAGCAAAAAACTTCGCCGGTCGTAGCAAAAACCAATTACG
GTTGCAGCAAATCACCGTCGCCGCCGTTGCGAGGTCGCAGCTCCACCTTGATGGATGCAGCAAAACACTTCGCCGGTAGT
AACAGAAACCAACTATGGTTGAAACTTTAATATCTATTGTTGAAACATTTCTGTCAATAGTTGCAATTCTAATTTTCCAC
TTGTGCGGTGTCAGTCACAGCTCCGGTCGTCGCTCGTCGCACCGTTTGGCTTGCAAGCCGCAACATCCGGTGCTGACCCC
CATCACGCGCGGCCATGGCGACAGGCGCGGCGAAGGGTAGGATCAGTGGATAAAATTCTGCTAGAGTTAGGAGACACTTG
GAATACATAGGAGACTACGGTTGGAGAAAGGTCTAGGGATAGGGATATTATGGAGGATGACACAAACACTGCTTACTTCC
ATGTTGTAGCTAATCATAGGTGAAGGAAAAACTGATTAGTGTTCTAGATGGACCTGA---------GGGCTTTGGACTAT
TATAAGGAGTTATTTAGATATGAACATAGACCTGATATTTCTCTTAAGAGTGATTTATTTGGAGAGGACGAGAAAATTTC
TGT
>chr2B_617
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----------------------------------------------------------GGCAATTATAACGCCCGTGAAT
GGATCGATC-GATCTTCTTTCACTATTCTCTACGGAGATCCTACGACACGGTCCGATTGGCAGGCAGTCCCCACAGATCA
CAA-GGAGCATGAAAGCCCAGGATATTGTCCACGCGGCGTCCACCGGCGCAGCAGAATCCGATGGCGCCAGCTCCCCATT
GGCCAGCGCTCTATCCATCCTACCACCCCAGGATTTCCCCGCCCACATCTTGTGGCTGCCGTGCGCCGCAACGCCACGAT
TTAACATCAAAACCGTCGTGGCATCCTGCAAATCCTGCGCGCTCCAACAGACGTCCT-AGCTGCCACTCCGCCGCGCGCG
TCAGCGACCTCACCGT--CACCGGCGAAGCAACACCGGCACCCATGGCGCTCGCCTCCACCTCCGCCACCGCCTCCGCGG
CCGTGCTCAAGAACCCGTTCCTCGGCGCGAGGCGCGCGCTCGCTAATGCCGCCTCCCTCGGCGCCGCCAAGCCCGTGACG
CGCCGCGTGGTGGTCGTCGCCGCGGCCGTCGGCAAGAAGTCGTGGATCCCCGCGGTCAAGAGCGATGCCGAGTTCATCAA
CCCGTCTTGGCTCGATGGCTCGTAAGGCTTCCTCGTTC---GTATTTCTCTTCGTTCGTCGCCCTGCATTAATCCCACTC
TACGCGAGGGGAGGCCTCCATG----GCAGCAACTCTGAGACTCACTCAACGCGTACGTGCAGGCTCCCCGGTGACTTCG
GCTTCGACCCGCTGGGGCTTGGCAAGGACCCGGCGTTCCTCAAGTGGTACAGGGAGGCCGAGCTGATCCACGGGCGGTGG
GCGATGGCCGCGGTCCTGGGCATCTTCATCGGGCAGGCGTACAGCGGCGTGCCGTGGTTCGAGGCCGGGGCGCAGCCTGG
CGCGGTGGCGCCCTTCTCCTTCGGGTCGCTCCTGGGCACCCAGCTGCTGCTCATGGGGTGGGTGGAGTCCAAGCGGTGGG
TCGACTTCTTCAACCCGGACTCCCAGTCGGTGGAGTGGGCCACGCCGTGGTCGCGCACGGCCGAGAACTTCGCCAACTTC
ACCGGTGAGCAAGGGTACCCGGGCGGCAAGTTCTTCGACCCGCTCGGCCTCGGTGGCGAGACCAAGGACGGCGTCTACAT
CCCCGACACCGAGAAGCTCGAGCGGCTCAAGGTGGCCGAGATCAAGCACTCGCGCCTCGCCATGCTTGCCATGCTCATCT
TCTACTTCGAGGCCGGACAGGGCAAGACGCCACTCGGCGCGCTCGGCCTATAAGACGA-TTTTTGGCTTGCGCGCGTGGT
GGGAGAGGGGTTGTTGCATTGCATCAGATCGGACGCACGGATTGCATGGGATCGGCTGGAGGTCGAAGAAGCAGCAGCAA
TGTATCTGTGTCCGTGTCTTCTTTGGGGTGGTGTGTGTAAATCGAATGGGGAATCAAGTACTCTTTCTTTCTCCAGCGTA
TGTACCATGTA--ATATATAGTCTGAGCTCTGTAATTTAAGGCAGAATGAGCAAGGGCATTTGATTCATCACCTACCAAG
TCTTTTACTAGAACATTGCTTGCATATTTAAACAACCCGCAAAAAAAA-----AATTGCATCAGTTGAAGGAAGCACGAA
AACTAGTAAAGTCTGCACTGCTCAGCGCAAGATAGGGTCACGAGATTCATCTAAAAATAATGCAGTGAGTACCAGTCGAA
CA-GAACAGGTGTTGGCTCTGAAAACG--TTATAATACAGAATATATTAACAGGAGCACGCATTCCTGAGCCTGAGGCCC
TGTTTGGTTCATAAGTCTTAGGACTTTTTTTAATCCCAACTTATAAGTCTCAAGTCTCTAAAAAGTCCTTACCTGTTTGG
TTCCTGGGACTTATAAGTCCCTATAAGACCACATTACAACTATAAGTTCCTGTAAGACTCTCCTTGAGAGTCTTATTTCA
TAAGTCCCAAATGCCCACTTTAAGTCTCTATAAGTCCCTCCTGTTTAGTTTAGATGTGACTTATAGGGACTTTTTTAAGT
CCCTAAACCAATAAGTCCATGGAAACAAACACCCTCTGAAACAGAGGAAAATTAGGAATAAATAAAGAAACAGAGGTGTT
GCATTCCACGTTCGCAGGGTTCTTTGCAAACTTTCCTACATAGTTCATCTC-----TGCGGTGTATTTACCAAAAGCAAC
TGTACGACTGTACCATAGGTGCCAAAGTAGCACCCAGCGATATTGTTAGTCCCCAAAACAGTATCCTCTGGCGTTTAGAC
TGAGTCTAATACCCTCTTTGAGGTTGGTATAAGGGCAGGAAGGATG----------------------------------
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----------------------------------------------------AAATTCTGCTAGAGTTAGGAGACATTTG
GAGTAAATAGGAGACTAC-GCCGGTGAAAGGTCTAGGGATAAGGATAGTATGGAGGATGGCACAAACACTGCTTACTTCC
ATGTTGTCGCTAATCAGAGGTGAAGGAAAAAATGATTAGTGTTCTAG---------------------------------
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>SNPs
SSSSSS-------S------S-------------------------SS----------S----S------------S---
--SS------------S-----S-----------------------------S---------------------------
-----------------------------S-----------------S------------------S-------------
--------S--------------------------------S----S---SS--SS-S-----------S----------
---------------S----------------------------------------------------------------
----------S----------------------------------------S-SS-------------------------
-----------S-------S-----------S---------------------------S-S--------------SS--
------S-------S------------------------S----SSSSSSSSSSSSSS-------------------S--
---------S------------------S---------------------------------------------------
---S----------------------------------------------------------------------------
---------------------------------------S--------------------S-------------------
---------------------------------------------------------S----------------------
--------------------------------S---S-------------------------------------------
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-----------------------------------------S-S------------------S-----------------
------S---------------SSSS------------------------------------------------------
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-----------S-----------------------------------------------------------------S--
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------------------------------------------------------------------S-------------
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-----S-----------------------S------------------------------------S-------------
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---------------S----S------------------------S--SSSSS---------------------------
---------------S--------------------S-------------------------------------------
--------------------------SSS------S-----------------------SSS-S-SSS------------
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----------------------------------------S-------S---S------------------S--S-----
-----------------------------------------S--------------------------------------
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----------------------------------------------------------------------S---------
------------------S--S----------------------------------------------------------
---------------------------------------------------------SSSSSSSSS-----S--------
------------S---------S---S------S----S-----------------S-S---------------------
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>forward_600
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--------------------TCCAAAGGTGACCGTCATCG----------------------------------------
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>reverse_2006
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-----GTGTGTCCGTGACTTCTTTGG------------------------------------------------------
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