>input_sequence_66153
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ATGGGCGCACCAGGCGCAGCTCCCCTAGCAGGCAACAGCTTCGTCATCCTCTCCGTCGCCGTCGTCGGCATCCTCGCCAC
CAGCCTCCTCCTCCTCGCCTACTACCTCTTCCTCACCCGGTGCGGCCTCGCCTCCTGGCGCCGCGACCACGACGACGTCG
TCACGACCACGCAGCATCACCACCATATCGTCTACTCCACAGCACCAGAGCCGAGCCGCGGCCTGGAGGAGGCGGCGATA
CGCCGGATACCCACGCTCCGGTACCGGGAGTCCAAGCAGCTGCAGGCACCGCAGGCCCAGGCGGCGAGCGAGTGCGCGGT
GTGCCTCAGCGAGTTCCAGGAGGGGGAGAGGCTCCGGCTGCTGCCGCCCTGCCTCCACCTCTTCCACATCGACTGCATCG
ACGCCTGGCTCCACGCCACCGCCAACTGCCCGCTCTGCAGGACCGCCATCTCCGGCTCCGCCTGCCAGCCCCAGCCCCAC
GTTATACTTAACCAAATCGACATCGTCAACGTCCTCCAA------GCCGACCACGTAGTCATCGACATCGCCTCGCCGTC
CCGGGGAGAAACGAGCAACGTCGCT------------GGCGTACCTGCGACGATAGTGAGCATGGGAGACGAGCGCATTG
ACCCGAGGAGGGACGAGTTGTTGGACGTGCAGCAGCCGATGAGAAGGTCGTTGTCCATGGACTCCTGCAACGACAAGCAC
TTGTACCTCGCCCTGCAGAAGGTCCTGCGCCACCACCACTCTCACTCTGCTTCTCTCGGGGAGGACCGCAAGGGGGAGAG
CAGCACCCCCGCCGCCGCAGCCAGCAGCCGGGCAGCAGGGAGGTTGCGGCGATCCTTCCTCTCCTTCAGCCACAGCCGGA
GCTCCAGAAGTGCCATCTTGCCAATCTGA---------------------------------------------------
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---------------------------------------------------------------
>chr7D_1_TraesCS7D01G252300
GCCAGTGTCTGCATCTTTTTTGGCAGAAAC--AAAATAGGCCGTCAAATCCGACCATGGCTGCTTGCTAGCTGCTCTCTG
TTCGACTCCCGAGCAATCCACGGTATAGTCACACTTGGGCT-GGGTGGGTTGGAATACTCTTAGGTCATGTACAATGATT
GATAAGATAGTTTTATCTTAAACCTTGCATGTAATTTAGAGATGACAAAAAAAAGGTATCTACAATGGGTCATCTCTTAG
CCTTATCTTCAATAACTAACTATTCTTACAAACATGACGAGGCATATTGTGCTAAGAGACCATCTCTTATCTTTTCTTAT
TTTTTACGAGTTCTCTCCTTCATCTCATCATTTATCCTACGTGACACTGTACCTGCCCTTAAAGCAATGAAGTACTGTGG
TGTGGCCGCGTTGACCAGCGGAGGGCTGGC----AAACACGGTGTATCGTGCGTGCAATGATCCGATGGACCCACTTGCC
AGCCTCCACCGAACGCGGTCGGCGATGATGACCGGCGGAGAGCATGCGGCGCTCTGTAGTTGGTGGCGTTCTTTTCCTTC
ACGTGGTTCCAGTTC----CACGCTCTTTCTCTCGTTCACGT------------------GGTGTCCTGGAGCG-----G
GTGTGGTATGGATCGCTTTTTCTGTATGTTATGCTCGCTCCCTGCTCAATTTGTGTTGACCGGCGGGCTTCGTTTCCCAC
CCATGGCACGACCACCGACTGCCAGAAGTCTACTCTCCTTCCTTCCTTCCTCCCCGCCAGAAAGGTCAAGCAACCACACG
CTAACAGCAGCAGGCGTGTCGCTGACTGACGCAGTGGCAGTGGCAGTGGCACCATCCCTACCAGATTCCTTCTCAAGCAC
TCGTCAATGGGATGTTT--TATATATGAGGATGCTCAGTCATCCTCGCCTCCACGGCTTCAACAAACAACACCGCCACCA
CAGCGCAGCATTCACTCCCGAGCATCACCGGGGCGGGCTGCGACTGCGAGCGATCGATC----TCGCTTAACCAACCACC
ATGGGCGCACCAGGCGCAGCTCCCCTAGCAGGCAACAGCTTCGTCATCCTCTCCGTCGCCGTCGTCGGCATCCTCGCCAC
CAGCCTCCTCCTCCTCGCCTACTACCTCTTCCTCACCCGGTGCGGCCTCGCCTCCTGGCGCCGCGACCACGACGACGTCG
TCACGACCACGCAGCATCACCACCATATCGTCTACTCCACAGCACCAGAGCCGAGCCGCGGCCTGGAGGAGGCGGCGATA
CGCCGGATACCCACGCTCCGGTACCGGGAGTCCAAGCAGCTGCAGGCACCGCAGGCCCAGGCGGCGAGCGAGTGCGCGGT
GTGCCTCAGCGAGTTCCAGGAGGGGGAGAGGCTCCGGCTGCTGCCGCCCTGCCTCCACCTCTTCCACATCGACTGCATCG
ACGCCTGGCTCCACGCCACCGCCAACTGCCCGCTCTGCAGGACCGCCATCTCCGGCTCCGCCTGCCAGCCCCAGCCCCAC
GTTATACTTAACCAAATCGACATCGTCAACGTCCTCCAA------GCCGACCACGTAGTCATCGACATCGCCTCGCCGTC
CCGGGGAGAAACGAGCAACGTCGCT------------GGCGTACCTGCGACGATAGTGAGCATGGGAGACGAGCGCATTG
ACCCGAGGAGGGACGAGTTGTTGGACGTGCAGCAGCCGATGAGAAGGTCGTTGTCCATGGACTCCTGCAACGACAAGCAC
TTGTACCTCGCCCTGCAGAAGGTCCTGCGCCACCACCACTCTCACTCTGCTTCTCTCGGGGAGGACCGCAAGGGGGAGAG
CAGCACCCCCGCCGCCGCAGCCAGCAGCCGGGCAGCAGGGAGGTTGCGGCGATCCTTCCTCTCCTTCAGCCACAGCCGGA
GCTCCAGAAGTGCCATCTTGCCAATCTGAAACTATTGTTCGTGGTAC----TAAACTGTACATTTCTTGTAGCTAGACTA
GATGATGAACTCC--------------------------------------ACTCGAGTAATACGACTTCA---------
--------TTTCTTTGTTTTCTGTTTTCATGATCGCTTGTTCAGCTTTATGTTGCACTCTAATCGATGGTGTTGAGGAAG
TAAATCGAACGAGTCTTGACTAGATGGGAGTACAGCGCGTACTTTAGCACCCACTCGACTTGTATCTGAAAGATAAAACA
CCAATCTCAAATTACTAATGTCTTCAGATGAGAAAGTGCAGAGGAAATCTCAAAAGGCAGAGGAGAACCCGACCCGTCGT
GATGCTGATCGGAGATTGATATACTCCCTCCGTCCCGAAAAACATGTCGCGGCGGCATTTTTGC-TAAAAAATCCTCTCG
TTTTTCCAGACCAAACCCGCGCTCCTTGTCCTCCTCCTCCGACAGAAGCAGCAGCTGCGCTGCTCTCCGCCGCCACTGCT
TCGCTGCTCCCCGCCGTCGCAGCTCCCCTTCTCCCCCGCTCTCCC---------GCCGCCGCAGCTCCCCTGCTCCCCCG
CCGCCGCAGCTCCCCTGCTCCCCCGCCGCAGCTGCCTCCTGCTCCGCCGCCGCAGCTACCGCTCGCCTGCCTCCCCAAGC
TTCCCCTTTCTCAA-AAA--AA-TCCTTGATTTGGATCCCATGTTAGTCCAACCCACAGCTACCGCCGCGCTCTGCTTCG
GCTGCGTCGGAACCGCCGTCGGAGAGCCCGCAGGCACCGGATCCGGACCACCAACAACAACCTAAAGGCCGACGAGCAGC
CGGG-TGTCGTCCTCGCCGTCGACGACGACGGTGCCGCCGACGCCGCGAAGCGAGGGCGAGATCCTCCAGTCGGCCAACT
TTGGATTTTTTTTGCCGACCTGCTCTCCGACGGCGAGTTGCAGCGCTGCTTGTCTATATCCGGAGAATTGGGAGTGTACG
TTGCCGGAACGGCGGCGGGGCCCCCTCCTCTCTCGGACTCCACGGCGGGTCATCTCTCCCCTG
>chr7B_14
-------------TCTTTTTTGGCAGAAAC--AAA-TAGGCCGTCAAATCCGACCATGGCTGCTTGCTAGCTGCTCTCTG
ATGGACTTCCGAGCAATCCGTGGTACAGTCACACTTGGGCTGGGGTGGGTTGGAATACTCTTAAACAAATGGAGT-----
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----------------------------------------------------------------------AGTACTGTGG
TGTGGCTGCGTTGACCAGCGGAGGGCTGGC----AAACACGGTGTATCGTGCGGGCAATGATCCGATGGGCCCACTTGCC
AGCCTCCACCGAACGCGGTCGGCGATGATGACCGGTGGAGAGCATGCGGCGCTCTGTAGTAGGTGGTGTTCTTTCCCTTC
ACGTGGTTGTGGATCCAGGCACGCTCTTTCTCTCTTTCAAACGTTTATCAGCTGACACCGGGGGGCCTGGAGCGGGTGTG
GTGTGGTCTGGATCGCTTTTTCTGTTTGTTATGCTC-----------AATTTGTGTTGACTGGCGGGCTTCGTTTCCCAC
CCATGGCACGACCACCGACTGCCAGAAGTCTACTCTCCTTCCTTCCT----CCCCGCCAGAAAGGTCAAGCAACCACACG
CTAACAGCAGCAGGCGTGTCGCTGACTGACGCAGTTGCAGTGACAGTGGCACCATCGCTACCAGATTCCTTCTCAAGCAC
TCGTCAATGGAATGTTTTATATATATGAGGATGCTCAGTCATCCTTGCCTTCAAGGCTTCAACAAACAACACCGCAACCA
CAGCGCAGCATTCACTCCCGAGCATCACCGGGGCGGGCTGCGACGGCGAGCGATCGATC----TCGCTTGACCAACCACC
ATGGGCGCGCCAGGCGCAGCTCCCTTAGCGGGCAACAGCTTCGTCATCCTCTCCGTCGCCGTCGTCGGCATCCTCGCCAC
CTCCCTCCTCCTCCTCACCTACTACCTCTTCCTCACCCGGTGCGGCCTCGCCTCCTGGCGCCGCGACCACGACGACGTCG
TTG---CCACGCAGCATCACCACCATATCGTCTACTCCACAGCACCAGAGCCGAGCCGCGGCCTGGAGGAGGCGGCGATA
CGCCGGATACCCACGCTCCGGTACCGGGAGTCCAAGCAGCTGCGGGCACCGCAGGCCCAGGCGGCGAGCGAGTGCGCGGT
GTGCCTCAGCGAGTTCCGGGAGGGGGAGAGGCTCCGGCTGCTGCCGCCCTGCCTCCACCTCTTCCACATCGACTGCATCG
ACGCCTGGCTCCACGCCACCGCCAACTGCCCGCTCTGCAGGGCCGCCATCTCCGGCTCCGCCTGCCAGCCCCAGCCCCAC
ATTATACTTAACCAAATCGGCATCGTCAACGTCCTCCAG------GCCGACCACACAGTCATCGACATCGCCTCGCCGTC
CCGGGGCGAAACGAGCAACGTCGGT------------GGCGCACCTGCGACGGTAGTGAGCATGGGAGACGAGCGCATTC
ACCCGAGGAGGGACGAGTTGGTGGACGTGCAGCAGCCGATGAGAAGGTCGCTGTCCATGGACTCCTGCAACGACAAGCAC
TTGTATCTCGCTCTGCAGAAGGTCCTGCGCCACCACCACTCTCACTCTGCTTCTCTCGGGGAGGACCGCAAGGGGGAGGG
CAGCACCCCCGCCGCCGCAGCCAGCAGCCGGGCAGCAGGGAGGCTGCGGCGATCCTTCCTCTCCTTCAGCCACAGCCGGA
GCTCCAGAAGTGCCATCTTGCCAATCTGAAACTATGGTTCAGTAGTACT------CTGTACATTTCTTGTGGCTAGACTA
GAGGATGAACTC--------------------------------------------------------------------
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>chr7A_14
-------------TCTTTTTTGGCAGAAGAAAAAA-TAGGCCGGCAAATCCGACCATGGCTGCTTGCTAGCTGCTCTCTG
TTCGACTCCCGAGCAATCCGTGGTACAGTCACACTTGGGCCGGGGTGGGTTGGAAAACTCTTAAACCAATGGAGT-----
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----------------------------------------------------------------------AG---TGTGG
TGTGGCCGCGTTGACCAGCGGAGGGCTGGCTGGCAAACACGGTGTATCGTGCGTGCAATGATCCGACGGGCCCACTTGCC
AGCCTCCACCGAACACGGTCGGCGATGATGACCGGTGAAGAGCATGCGGCGCTCTGTAGTTGGTGGCGTTGTTTCCCTTC
ACGTGGTTGTGGATCCAGGCACGCTCTTTCTCTCGTTCAATCGTTTCTCAGCTGACACCGTGGGGCCTGGAGCGGGTGTG
T----------ATCACTTTTTCTGCTTGTTATGCTCGCTCGCTGCTCAATTTGTGTTGACTGGCGGGCTTCGTTTCCCAC
CCATGGCACGACCACCGACTGCCAGAAGTCTACTCTCCTTCCTTCCTCCA----CGCCAGAAAGGTCAAGCAACCACACG
CTAACAGCAGCAGGCGTGTCGCTGACTGACGCAGTGGCAGTGGCA------CCATCCCTACCAGATTCCTTCTCAAGCAC
TCGTCAATGGAATGTTT--TATATATGAGGATGCTCGGTCATCCTCGCCTTCAAGGCTTCAACAAGCAACACCGCCACCA
CAGCGCAGCATTCACTCCCAACCATCACCGGGGCCGGCTGCGACTGCGAGCGATCGATCGATCTCGCTTAACCAACCACC
ATGGGCGCGCCAGGCGCAGCTCCCCTAGCAGGCAACAGCTTCGTCATCCTCTCCGTCGCCGTCGTCGGCATCCTCGCCAC
CAGCCTCCTCCTCCTCACCTACTACCTCTTCCTCACCCGGTGCGGCCTCGCCTCCTTGCGCCGCGACCACGAGGACGACG
TCG---CCACGCAGCATCACCACCATGTCGTCTACTCCACAGCACCAGAGCCGAGCCGCGGCCTGGAGGAGGCGGCGATA
CGCCGGATACCCACTCTCCGGTACCGGGAGTCCAAGCAGCCGCAGGCACCGCAGGCCCAGGCGGCGAGCGAGTGCGCGGT
GTGCCTCAGCGAGTTCCAGGAGGGGGAGAGGCTCCGGCTGCTGCCGCCCTGCCTCCACCTCTTCCACATCGACTGCATCG
ACGCCTGGCTCCACGCCACCGCCAACTGCCCGCTCTGCCGGGCCGCCATCTCCGGCTCCGCGTGCCAGCCCCAGCCCCAC
ATTATACTCAGCCAAATCGACATCGTCAACGTCCTCCAACTCCAAGCCGACCACACGGTCATCGACATCGACTCGCCGTT
CCGGGGCGAAACGAGCGACGTCGGTGCCGATGTCGACGGCGTACCTGCGACGATAGTGAGCATGGGAGACGAGCGCAATG
ACCCGAGGAGGGAAGAGTTGTTGGACGTGCAGCAGCCGATGAGAAGGTCGCTGTCCATGGACTCCTGCAACGACAAGCAC
TTGTACCTCGCCCTGCAGAAGGTCCTGCGCCACCACCACTCCCACTCCGCTTCTCCCGGGGAGGACCGCAAGGGGGAGAG
CAGCACCCCCGCCGCCGCAGCCAGCAGCCGGGCAGCAGGGAGGTTGCGGCGGTCCTTCCTCTCCTTCAGCCACAGCCGGA
GCTCCAGAAGTGCCATCTTGCCAATCTGAAATTGTGGTTCAGTAGTTGTAGTAAACTGTACATTTCTTGTGGCTAGACTA
GATGATGAACTCAAACATTACTTGTGGCTAGACTAGATGATTGATTGCTCAACTCGAGTTATACGACCCTCTCACTCTTT
TCATTTTTTTTTTTGGGTTTCTGTTTTCAAGATCGCTTGTTCAGCTTTG-GTTGCACTCTAATCGACGATGTTTAGTTAG
TAAATCGAACGAATCTTGACTAGATGGGAATACATTGCATACTTTAGCACCCACTCCACTTGTATCTGAAAGATAAAACA
CCAATCTCAAATTACCAACGTCTTCAGATGAGAAAGTGCAGAGGAAATCTCAAAAGGCAGAGGAGAACCCGACCCGACGT
GATGCTGATCGGAGATTGATATA---------------------------------------------------------
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>chr1D_2222
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------------------ATATACTCCCTCCGTCCTGAAAAACATGTCGCGGCGGCATTTTTGC-AAAAAAAACCTCTCA
TTTTTCCCGACCAAACCCGCGCTCCTTGTCCTCCTCCTCCGACAGAAGCAGCAGCTGCGCTGCTCTCCGCCGCCACTGCT
TCGCTGCTCCCCGCCGTCGCAGCTCCCCTTCTCCCCCGCTCTCCC---------ACCGCCGTAGCTCCCCTGCTCCCCCG
C-----------------TCTCCCGCCGCAGCTTCCTCCTGCTCCGCCGCCGCAGCTACCGCTCGCCTGCCTCCCCAAGC
TCCCCCTTTCTC-A-AAA--AA-TCCTTGATTTGGATCCCATGTTAGTCCAACCCACAGCTACCGCCGCGCTCTGCTTCG
GCTGCGTCGGAACCGCCGTCGGAGAGCCCGCAGGCACCGGATCCGGACCACCAACAACAACCTAAAGGCCGACGAGCACC
CGGG-TGTCGTCCTCGCCGTCGACGATGACGGTGCCGCCGACGCCGCGAAGCGAGGGCGAGATCCTCCAGTCGGCCAACT
TTGGATTTTTTTTGCCGACCTGCTCTCCGACGGCGAGTTGCAGCGCTACTTGTCTATATCCGAAGAATTGGGAGTGTACG
TTGCCGGAACGGCGGCGGGGCCCCCTTCTCTCTCGGACTCCACGGCGGGTCATCTCTCCCCTG
>chr4A_2222
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------------------ATCTACTCCCTCCGTCCCGAAAAACATGTCGCGGCGGCATTTTTGC-AAAAAAAACCTCTTA
TTTTTCCCGGCCAAACCCGCGCTCCTCGTCCTCCTCCTCCGACAGAAGCAGCAGCTGCGCTGCTCTCCGCCGCCACTACT
TCGCTGCTCCCCGCCGCCGTAGCTTCCCTTCTCCCCCGCTCTTCC---------GCCGCCGCAGCTCCCCTGCTCCCCCA
C-----------------TCTCCCGCCGCAGCTGCCTCTTGCTCCGCCACCGCAGCTACC-CTCGCATGCCTCCCCAAGC
TCCCCCTTTCTC-AAAAA--AA-TCCTTGATTTGGATCCCATGTTAGTCCAACCCACAACTACCGCCGCGCTCTGCTTCG
GCTGCGTCGGAACCACCGTCGGAGAGCCCGCAGGCGCCGGATTCGGACCACCAACAACAACCTAAAGGACGACGAGCAGC
TGGG-TGTCGTCCTCGCCGTCGATGATGACGGTGACGCCGACAGCGCGAAGCGAGGGCGAGATCCTCCAGTCGGCCAA--
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>chr7D_2223
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-------------------TATACTCCCTCCGTCCCGAAAAACATGTCGCGGCGGCATTTGTGC-AAAAAAAACCTCTCG
-TTTTTCCGACCAAACCCGCGCTCCTTGTCCTCCTCCTCCGACAGAAGCAGCAGCTGTGCTGCTCTCCGCCGCCACTGCT
TCGCTGCTCCCCGCCGCCGCAGCTCCCCTTCTCCCCCTCTCTCCC---------GCAGCCGCAGCTCCCCTGCTCCCCCG
C-----------------TCTCCCGCCGCAGCTGCCTCCTGCTCCGCCGCCGCAGCTACCGCTCGCCTGCCTCCCCAAGC
TCCCCCTTTCTC-A-AAA--AA-TCCTTGATTTGGATCCCATGTTAGTCCAACCCACAGCTACCGCCGCGCTCTGCTTCG
GCTGTGTCGGAACCGCCGTCGGAGAGCTCGCAGGCACCGGATCCGGACCACCAACAACAACCTAAAGGCCGACGAGCAGC
C-GG-TGTCGTCCTCGCCGTCGACGACGACGGTGCCGCCGACGCCGCGAAGCGAGGGCGAGATCCTCTAGTCGGCCAACT
TTGGATTTTTTTTGCCGACCTGCTCTTCGACAGCGAGTTGCAGCGCTGCTTGTCTATATCCGGAGAATTGGGAGTGTACG
TTGCCGGAACGGCGGCGGGGCCCCCTCCTCTCTCGGACTCCACGACGGGTCATCTCTCCCCTG
>chr7D_2224
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--------------------ATACTCCCTCCGTCCCG-AAAACATGTCGCGGTGGCATTTTTGC-AAAAAAACCCTCTCG
TTTTTCCCGACCAAACCCGCGCTCCTTGTCCTCCTCCTCCGACAGAAGTAGCAGCTGCGCTGCTCTCCGCCGCCACTGCT
TCGCTGCTCCCCGCCGCCGCAGCTCCCCTTCTCCCCCGCTCTCCC---------GCCGCCGCAGCTCCCCTGC-CCCCCG
C-----------------TCTCTCGCCGCAGCTGCCTCCTGCTCCGCCGCCGCAGCTACCGCTCGCCTGCCTCCCCAAGC
TCCCCCTTTCTC-A-AAAG-AA-TCCTTGATTTGGATCCCATGTTAGTCCAACCCACAGCTACCGTTGCGCTCTGCTTCG
GCTGCGTCGGAACCGCCGTCGGAGAGCCCGCAGGCACTGGATCCGGACCACCAACAACAACCTAAAGGCCAACGAGCAGC
CGGG-TGTCGTCCTCGCCGTCGACGACGACGGTGCCGCCGACGCCGCGAAGCCAGGGTGAGATCCTCCAGTCGGCCAACT
TTGGATTTTTTTTGCCGACCTGCTCTCCGACGGCGAGTTGCAGCGCTGCTTGTCTATATCCGGAGAATTGGGAGTGTACG
TTGCCGGAACGGCGGTGGGGCCCCCTCCTCTCTCGGACTCCACGGCGGGTCATCTCTCCCCTG
>chr2B_2224
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--------------------ATACTCCCTCCGTTCCAAAATACATGTCGCGGTGGCATTTTTGC-AAAAAAACCCTCTTG
TTTTTCCTGACCAAACCCGTGCTCCTCGTCCTCCTCCTCCGACAGAAGCAGCAGCTGCGTTGCTCTCCGCCGCCACTGCT
TCGCTGCTCCCCGCCGCCGCAGCTCCCCTTCTCGCCCGCTCTCCC---------ACCGCCGCAGCTCCCCTGCTCCCCCG
C-----------------TCTCCCGCCACAGCTGCCTCCTGCTCCTCCGCCGCCGCTACCGCTTGCCTGCCTCCCCAAGC
TCCCCCTTTCTC-A-AAAAAAA-TCCTTGATTTGGATCCCATGTCAGTCCAACCCACAGCTACCACCGCGCTCTGCTTCG
GCTGCGTCGGAACCGCCGTCGGAGAGCCCGCAGGCGCCGGATCCGTACCACCACCAACAACCTAAAGGCCGACGAGCAGC
C-GGGTGTCGTCCTTGCCGTCGACGACAACGGTGCCACCAACGCCGCAAAGCGAGGGTGAGATCCTCCAGTCGGCCAAC-
--------------------------------------------------------------------------------
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>chr2D_2225
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---------------------TACTCCCTCCGTCCCGAAAAACATGTCGCGGCGGCATTTTTGCAAAAAAAACCCTCTCA
TTTTTCCCGACCAAACCCGCGCTCCTTGTCCTCCTCCTCCGACAGAAGCAGCAGCTGCGCTGCTCTCCGCCGCCACTGCT
TCGCTGCTCCCCGCCGCCGCAGCTCCCCTTCTCCCCCGCTCTCCC---------GCCGCCGCAGCTCCCCTGCTCCCCCG
C-----------------TCTCCCGCCGCAGCTGCCTCCTGCTCCGCCGCCGCAGCTACCGCTCGCCTGCCTCCCCAAGC
TCCCCCTTTCTC-A-AAAA-AA-TCCTTGATTTGGATCCCATGTTAGTCCAACCCACAGCTACCGCCGCGCTCTGCTTCG
GCTGCGTCGGAACCGCCGTCGGAGAGCCCGCAGGCACCGGATCCGGACCACCAACAACAACCTAAAGGCCGACGAGCAGC
C-GG-TGTCGTCCTCGCCGTCGACGACGACGGTGCCGCCGACGCCGCGAAGCGAGGGCGAGATCCTCCAGTCGGCCAACT
TTGGATTTTTTTTGCCGACCTGCTCTCCGACGGCGAGTTGCAGCGCTGCTTGTCTATATCCGGAGAATTGGGAGTGTACA
TTGCCGGAACGGCGGCGGGGCCCCCTCCTCTCTCGGACTCCACGACGGGTCATCTCTCCCCTG
>chr2D_2225
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---------------------TACTCCCTCCGTCCCGAAAAACATGTCGCGGCGGCATTTTTGC-AAAAAAAACCTCTCG
TTTTTCCCGACCAAACCCGCGCTCCTTGTCCTCCTCCTCCGACAGAAGCAGCAGCTGCGCTGCTCTCCGCCGCCACTGCT
TCGCTGCTCCCCGCCGCCGCAGCTCCCCTTCTCCCCCGCTC---------------------------------------
--------------------CCCCGCCGCAGCTGCCTCCTGCTCCGCCACCGCAGCTACCGCTCGCCTGCCTCCCCAAGC
TCCCCCTTTCTC-A-AAAAAAA-TCCTTGATTTGGATCCCATATTAGTCCAACCCACAGCTACCGCCGCGCTCTGCTTCG
GCTGCGTCGGAACCGCCGTCGGAGAGCCCGCAGGCACCGGATCCGGACCACCAACAACAACCTAAAGGCCGACGAGCAGC
C-GG-TGTCATCCTCGCCGTCGACGACGACGGTGCCGCCGACGCCGCGAAGCGAGGGCGAGATCCTCCAGTCGGCCAACT
TTGGATTTTTTTTGCCGACCTGCTCTCCGACGGCGAGTTGCAGCGCTGCTTGTCTATATCCGGAGAATTGGGAGTGTACG
TTGCCGGAACGGCGGCGGGGCCCCCTCCTCTCTCGGACTCCACGATGGGTCATCTCTCCCCTG
>chrUn_2255
--------------------------------------------------------------------------------
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---------------------------------------------------GCGGCATTTTTGC-AAAAAAACCCTCTCA
TTTTTCCCAACCAAACCCGCGCTCCTTGTCCTCCTCCTCCGACAGAAGCAGCAGCTGCGCTGCTCTCCGCCGCCACTGCT
TTGCTGCTCCCCGCCGCCGCAGCTCCCCTGCTC---------CCC---------GCCGCCGCAGCTCCCCTGCTCCCCCG
C-----------------TCTCCCGCCGCAGCTGCCTCCTGCTCCGCCGCCGCAGCTACCGCTCGCCTGCCTCCCCAAGC
TCCCCCTTTCTC-A-AAAA-AAATCCTTGATTTGGATCCCATGTTAGTCCAACCCACAGCTACCGCCGCGCTCTGCTTCG
GCTGCGTCGGAACCGCCGTCGGAGAGCCCGCAGGCACCGGATCCGGACCACCACCAACAACCTAAAGGCCGACGAGCAGC
C-GGGTGTCGTCCTCGCCGTCGACGACGACGGTGCCGCCGACGCCGCGAAGCGAGGGCGAGATCCTCCAGTCGGCCAACT
TTGGATTTTTTTTGCCGACCTGCTCTCCGACGGCGAGTTGCAGCGCTGCTTGTCTATATCCGGAGAATTGGGAGTGTACA
TTGCCGGAACGGCGGCGGGGCCCCCTCCTCTCTCGGACTCCACGACGGGTCATCTCTCCCCTG
>chr3D_2264
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------------------------------------------------------------TTGC-AAGAAAACCCTCTCG
TTTTTCCCGACCAAACCCGCGCTCCTTGTCCTCCTCCTCCGACAGAAGCAGCAGCTGCGCTGCTCTCCGCCGCCACTGCT
TCGCTGCTCCCCGCCGCCGCAGCTCCCCTTCTC---------CCCCGCTCTCCCGCCGCCGCAGCTCCCCTGCTCCCCCG
C-----------------TCTCCCGCCGCAGCTGCCTCCTGCTCCGCCGCCGTAGCTACCGCTCGCCTGCCTCCCCAAGC
TCCCCCTTTCTC-A-AAAA-AA-TCCTTGATTTGGATCCCATGTTAGTCCAACCCACAGCTACCGCCGCGCTTTGCTTCG
GTTGCGTCGGAACCGCCGTCGGAGAGCCCGCAGGCACCGGATCCGGACCACCAACAACAACCTAAAGGCCGACGAGCAGC
C-GGGTGTCGTCCTCGCCGTCGACGATGACGGTGCCGCCGACGCCGCGAAGCGAGGGCGAGATCCTCCAGTCAGCCAACT
TTGGATTTTTTTTGCCGACCTGCTCTCCGACGGCGAGTTGCAGCGCTGCTTGTCTATATCCGGAGAATTGGGAGTGTACG
TTGCCGGAACGGCGGCGGGGCCCCCTCCTCTCTCGGACTCCACGGCGGGTCATCTCTCCCCTG
>chr3D_2320
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-------------------------------------TCCGACAGAAGCAGCAGCTGCGCTGCTCTCCGCCGCCACTGCT
TCGCTGCTCCCCGCCGCCGCAGCTCTCCTTCTC---------CCCCGCTCTCCCACCGCCGCAGCTCCCCTGCTCCCCCG
C-----------------TCTCCCGCCGCAGCTGCCTCCTGCTCCGCCGCCGCAGCTACCGCTCGCCTGCCTCCCCAAGC
TCCCCCTTTCTC-AAAAAA-AA-TCCTTGATTTGGATCCCATGTTAGTCCAACCCACAGCTACCGCCGCGCTCTGCTTCG
GCTGCGTCGGAACCGCCGTCGGAGAGCCCGCAGGCACCGGATCCGGACCACCAACAACAACCTAAAGGCCGACGAGCAGC
C-GGGCGTCGTCCTCGCCGTCGACGACGACGGTGCCGCCGACGCCGCGAAGCGAGGGCGAGATCCTCCAGTCGGCCAACT
TTGGATTTTTTTTGCCGACCTGCTCTCCGACGGCGAGTTGCAGCGCTGCTTGTCTATATCCGGAGAATTGGGAGTGTACG
TTGCCGGAACGGCGGCGGGCCCCCCTCCTCTCTCGGACTCCACGGCGGGTCATCTCTCCCCTG
>SNPs
SSSSSSSSSSSSS----------------------S--------------------------------------------
-------------------SS----S-------------------------------------SSS--SSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------
---------------------------------------------------------------------S----------
-----------------------------------S--------------------------------------S-----
--------SSS-S--------------------------SSS--------------------S-S---------------
-------S-----------------S--------------S-------------------S-------------------
-----------------------------------------------S-SS-----------------------------
--------------------------------------------------------------------------------
----------S---------------------------------------S--S--------------------------
--------------------------------------------------------------------------------
--------S-----------------------------------------------------------------------
----------------S---------------------------------------------------------------
--SSSS--------------------------------------------------------------------------
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-----------------------------------------S--------------------------------------
S-----------------------------------------------------SS------------------------
------S----------------S--------------------------------------------------------
--------------------------------------------------S-----------------------------
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-----------------------------------S----SSSSSSS-----------------------S---------
------------S----------------------------------------------S-------SSSS---------
-----------S--S-S------------S------------------SS----------------S-S----S--SS--
------------S----------------S----SS--S-----------------S-----------------------
---------------S--S---------------------------------------------------------S---
-----------------------------------------------------------------S------S-------
-------S------------------------------------------------------------------------
--------------------------------------------------------------------------------
-SSSSSSSSSSSSSSSSS--------------------------------------------------------------
-S----------S-------------------------------------------------------------------
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>forward_380
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----------------------------------------GTGACACTGTACCTGCCCTT--------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
>reverse_2196
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------CGCGTACTTTAGCACCCACT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
