>input_sequence_66117
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-------------------------------------------ATGGCCGTGTCCGAGCTCGAGGTCGACGGCGTCGTCT
TCCCGCCGCTCGCCCGCCCGCCGGGCTCCGAGCACGCCCACTTCCTCGCCGGCGCAGGTGATTATTCAGTCAACGGCTCC
GGGA-C-TGCGACCTTAGATTCCGTTTTAGCGTATATCGTCTGGTGTTGGTCGGTTGAGATGCTAGATTTT---------
----TATTATTCAACCGTGTGCTCTGCTCACGGCGCGTGCAGGCGTGCGCGGCATGGAGATCGGCGGCAACTTCATCAAG
TTCACGGCCATCGGCGTCTACCTGCAGGCCGACGCCGCCGTCCCCGCGCTCGCCGCCAAGTGGGCCGGCAAGCCCGCCGC
CGACCTCGCCTCCGACGCCGCCTTCTTCCGCGACGTCGTCACCGGTAACTAATCCACATACGTACACACATACC---TCC
GCTTCCACACCG----------TGCAATAACCAATGGCCGGCGGTGCAGGCGAGTTCGAGAAGTTCACCAGGGTGACCAT
GATCCTGCCGCTGACGGGCGCGCAGTACTCGGACAAGGTGACCGAGAACTGCGTCGCCTACTGGAAGGCCAACGGCGTGT
ACACGGACGCCGAGGCCGCCGCCGTCGACAAGTTCAAGGAGGCCTTCGGGCCCCACAGCTTCGCCCCCGGCGCCTCCATA
CTCTTCACCCACTCACCCGCCGGCGTCCTCACCGTGGCCTTCTCCAAGGACTCGTCCGTGCCGGAGTCCGGCGGCGTGGC
CATCGAGAACGCCCGGCTCTGCGAGGCCGTGCTGGAGTCCATCATCGGCGAGCACGGGGTGTCGCCTGCGGCCAAGCTCA
GCCTGGCCACCAGGGTCGCCGAGCTGCTCAAGGGGGCCGC------CGGCGGCGAGCCGGCCGTGGAGCCCGTGTCGGTT
TCGGTGTGA-----------------------------------------------------------------------
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>chr5A_1_TraesCS5A01G475600
CCCGCACCACCTCCCCGCCCGCCACGGAGGGCGGGGAGGAGGGATTTCCAGATCTGGGACGGGGTGTCGATGCGAGGAAG
GAGCACTCCAGGGAGCAGGGGAGCGGAGAAGGAGGAGGAGGCGCCCCGCTGCCGCCGCGGCCCGGCCGGAGGCCAGCGGC
GGCGGCGAGGGAGACGAGCGCGGACGAGGGGATGTTGAGGCGACGGCGGCGGCGTTCGCCTCATGAGTCGCAAGAGCGAC
CCACGAGACGCGGGTGAAGAATCTGGCATTGGCCATAATTTTCTTTTCTTTCAAAACGGAGGTAAAAATTTACATTATCA
TTAATTAAGCAGAAAAGAATTGCCCAGTTAAGCACAAGATAATTCCAAAAGGTTGTGATTTTACTCGTAGTACAAACAAT
TGGAGCTTTTCCACACCCTACAAGGTGATTTCTTTAAT---------ATCGGTCTGCAGTGCACGGTGCAGTTTTAGTTT
TATATTCTTTTTTGAAACATGCAGTTTTAGTTTGGTGATATGTTGAGTTCCTTTCCTTTGCCAGACCGGCAGACCCTGCA
TCGGCCAACAGCACGAGCGTCTCGTCTGGGCTCCTGCGTGAGTTGAATGGTAGCTC------------------------
-----GCTTGACCTCGCCGCAAAACCTGGCGCGCGGCCACGTCCGTCCT----------CTCAACGTGCCTCTCCTAACT
ACCACTAACCACGCCCCCAGACGCGCCCACAAACTACATCTTTGCCACAAGGCACAAGTTC-ACCCCCCGTCTA------
--------CGCGTAGGCCAAAGAACTAGACCAGATTACGGCCGTGGCATAATCGCAATTACGGGCAGAGTCCACGGGCGT
TTATATAGCCGCTGGGGTGTCATATAGGAGAGG---GCACCACCACCCCAGCTGACCATCCCGTGCGCCCACGCCTCAAC
AGATCGCACCTACCCTGCCGGGCCGGCCTGCCCCCATCACATCAATACAAGCGTTCGCTCGCTACGTG----CCGTCGTC
TCCGGAGACCCTCCGCGCACC-------------ACCGAGACCATGGCCGTGTCCGAGCTCGAGGTCGACGGCGTCGTCT
TCCCGCCGCTCGCCCGCCCGCCGGGCTCCGAGCACGCCCACTTCCTCGCCGGCGCAGGTGATTATTCAGTCAACGGCTCC
GGGA-C-TGCGACCTTAGATTCCGTTTTAGCGTATATCGTCTGGTGTTGGTCGGTTGAGATGCTAGATTTT---------
----TATTATTCAACCGTGTGCTCTGCTCACGGCGCGTGCAGGCGTGCGCGGCATGGAGATCGGCGGCAACTTCATCAAG
TTCACGGCCATCGGCGTCTACCTGCAGGCCGACGCCGCCGTCCCCGCGCTCGCCGCCAAGTGGGCCGGCAAGCCCGCCGC
CGACCTCGCCTCCGACGCCGCCTTCTTCCGCGACGTCGTCACCGGTAACTAATCCACATACGTACACACATACC---TCC
GCTTCCACACCG----------TGCAATAACCAATGGCCGGCGGTGCAGGCGAGTTCGAGAAGTTCACCAGGGTGACCAT
GATCCTGCCGCTGACGGGCGCGCAGTACTCGGACAAGGTGACCGAGAACTGCGTCGCCTACTGGAAGGCCAACGGCGTGT
ACACGGACGCCGAGGCCGCCGCCGTCGACAAGTTCAAGGAGGCCTTCGGGCCCCACAGCTTCGCCCCCGGCGCCTCCATA
CTCTTCACCCACTCACCCGCCGGCGTCCTCACCGTGGCCTTCTCCAAGGACTCGTCCGTGCCGGAGTCCGGCGGCGTGGC
CATCGAGAACGCCCGGCTCTGCGAGGCCGTGCTGGAGTCCATCATCGGCGAGCACGGGGTGTCGCCTGCGGCCAAGCTCA
GCCTGGCCACCAGGGTCGCCGAGCTGCTCAAGGGGGCCGC------CGGCGGCGAGCCGGCCGTGGAGCCCGTGTCGGTT
TCGGTGTGAATGAACAGGG------GCACCGCGCGTCCGTCACTGGTGTGGTGGCTTGTGTGGCTGGTGGTGTCCGTGGT
GGGAGGTCGTGTTCCCTCCAGTTCCTCACGGTTTGTCGGTTTTCTTCCCTGCATATGCAACCATGTGTGGATAAGTGGAT
AACTATGAGTCTGTGATGATTT--ACTTGGATTAATAAAGAAATCTGCCCTTCTTTACATCTTACTCCCTCTGTTAGTGA
ATATAATAAGGTCTTTAGAGATTTCAATACCGACTACATACGGGTGTATAGGCACATTTTAGAATGCATATTCACTTATT
TTGCTTTGTATATAGCCTATATTGAATCTTATTTTGCTTTGTATATAGCCTATATTGAAATCTGTTCTATATTTAGGAAC
GAGGGGGTAGATTTGATGACAGAGAGAAGAGATTAATTTAGCTTTGTTTACGTGTTTATACTCTTAAATGGGGACATGAA
TATGATCGCATGCGCGTGTGCGCAGTATTCAGTCAAGTTCTACGCTTTTCCTTTTTTTTGAGGGGCGCTTTTCCTTTTTT
TTGGCATGTCAAGTTTTACGTGCACGGCGAACCAACCTGTGGTTGGATGGTTAGAGGGACTGTGGTATCCCCAGCTCATC
AGGGTTCAAATCCTGGTGCTCGCATTTATTCCTAAATTTATTTTAGGATTTCTGGCAATGCGCATTCAGTGGAAGGAGAC
GTTTCCGCCAACGACGAGGCGTCTACGGTGATTTCGTAAATCTCAAGATGATATGCCGGCTCAGTCTTTTGAAGATGCCC
ATAGAGGTAAGATGTGCGTGTCTGTGTTCATAGAAATGAGTGTATGCGCGTGTATATGAGCGCTTGTGTCTGTACTGATA
TTCAAAAAAGTTCTACGTACACGTTTCATGTGAGATGATAAGTTCGACAAACCCTATTCGCCGCTGCAGGCGCCGGTTAA
CCGGCAGTTTTTCTAACCGGCGCCTGCAGCCGCGTTAACTGGGCTGGCCCATGTATT
>chr5D_278
ATTTGT--------------------------------------------------------------------------
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------------------------------------------CTTTTCTTTTAAAGCGGAGGCAAAAGTTTGCATTATCA
TTAATTAAGCAGAAGAGAAATGCCCAGTTAAGCACAAGATAATTCCAAAAGGTTGTGATTTTACTT---GTACAAACAAT
TGGAGCTTTTCCACACCCTATAAGGTGGTTTCTTTAATTCTGTTGAGATCGGTCTGCAGTGCACGGTGCAGTTTTTGTTT
TTG----TTTTTTGAAACATTCAGTTTTAGTTTGGTGATATGTTGAGTTCCTTTGCTTTACCAGACCGGCAGACCCTGCA
TCGGCCAGCAACACGAGTGTCTGGTCTGGACTCGTGCGTGAGTTTTTTTTTTTTTTTGAGGGACTCGTGCGTGAGTTGAA
TGGTAGCTTGACCTCGCCGCAAAACCTGGCGCGCGGACACGTCC----TCTCTCTGCCCCTCAACGTGCCTCTCCTAACT
ACCACTAACCACGCCCCCAGATGCGCCCACAAACTACATCTCTGCCACAAGG-ACAAGGTCCACCCCCCGTCACCGTCTA
GTCTAGGCCGCGTAGGCCAGAGAACCAGACCAGATTACGGCCGTGGCATAATCGCAATTACGGGCAGAGTCGACGGGCGT
TTATATAGCTGTTGCGGTGTCATATAGGGGGGGCACGCACCACCACCCCAGCTACCCATCCCGTGCGCCTACGCCTCGCC
AGATCGCACCTACCCTGCCGG-----CCTGCCCCCATCACATCAATACAAGTGTTCGCTCGCTACGTG----CCGTCGTC
TCCGGAGACCCTCCGTGCACC-------------ACC------ATGGCCGTGTCGGAGCTCGAGGTCGACGGCGTCGTCT
TCCCGCCGCTCGCCCGCCCGCCGGGCTCCGAGCACGCCCACTTTCTCGCCGGCGCAGGTAACTATTCCGTCAACGGCTCC
GGGGTC-TGCGACTTTAGATTCTGTTTTAACGTACGTA-TCTGGTGTTGGTCGGTTGAGATACTAGATTAT---------
----TATT---GAACCGTGTGCTCTGCTCTCGGCGCGTGCAGGCGTGCGGGGGATGGAGATCGGGGGCAACTTCATCAAG
TTCACGGCCATCGGCGTCTACCTGCAGGCCGACGCCGCCGTCTCCGCGCTCGCCGCCAAGTGGGCCGGCAAGCCCGCCGC
CGACCTCGCCTCCGACGCCGCCTTCTTCCGCGACGTCGTCACCGGTAACTAATTAACACGGTAACTCTCTGTGTTGCACT
GTTGCTTGACACGCTGCTGCGCTGCAATAACCAATGGCCGGCGATGCAGGCGAGTTCGAGAAGTTCACGAGGGTGACGAT
GATCCTGCCGCTGACGGGCGCGCAGTACTCGGACAAGGTGACGGAGAACTGCGTCGCCTACTGGAAGGCCACCGGCGTGT
ACACGGACGCCGAGGCCGCCGCCGTCGACAAGTTCAAGGAGGCCTTCGGGCCCCACAGCTTCGCCCCCGGCGCGTCCATC
CTCTTCACCCACTCCCCCGCCGGCCTCCTCACCGTCGCCTTCTCCAAGGACTCGTCCGTGCCGGAGTCCGGCGGCGTGGC
CATCGACAACGCCCGGCTCTGCGAGGCCGTGCTGGAGTCCATCATCGGCGAGCACGGGGTGTCGCCGGCGGCCAAGCTCA
GCCTGGCCACCAGGGTCGCCGAGCTGCTGGAGGGGGCCGCCCTCGCCGGCGGCGAGCCGGCCGCGGAGGCCGTGTCGGTT
TCGGTGTGAACGAACCGGGGGGCATGCACCGCGCGTCCGTCACTGGTGTGGTGGCTTGTGTGGCTGGTGGTGTCCGTGGT
GGGACGTCGTGTTCCCTCCATTTCCTCACGGTTTGTTGGTTTTCTTCCCTGCACATGCAACCATGC--------GTGGAT
AACTATGAGTCTGTGGTGATTT--ACTTGGATTAATAAAGAAACTCT---------------------------------
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>chr5B_570
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------------------GTCTGGTGTGGGCTCGTGCGTGAGT---------------------------------TGAA
TGGTAGCTTGACGTCGCCGCAAAACCTGGCGCGCGGCCACGTCCGTCCTCTCTTTGCCCCTCAACGTGCCTCTCCCAACT
ACCACTAACCACGCCCCCATATGCGCACACAAACTACATCTTTGCCACAAGGCACAAGGTCCACCCTCCGTTACCGTCTA
GTCTAGGCCGCGTAGGCCAGAGAACCAGACCAGATTACAGCCGTGGCACAATCGCAATTACGGGCAGAGTGTACGGGCGT
TTATATAGCTGTTGCGGTGTCATATAGGGGGGGCACGCACCACCACCCCAGCTACCCATCCCGTGCGCCCACGCCTCGCC
AGATCGCACCTACCCTGCCGC-----CCTGCCCCCGTCCCATCAATACAAGTGTTTGCTCGCTACGTGCCGTCCGTCGTC
TCCGGAGACCCTCCATCCATCCATCCGGCGATATACC------ATGGCCGTGTCCGAGCTGGAGGTCGACGGCGTCGTCT
TCCCGCCGCTCGCCCGCCCGCCGGGCTCCGAGCACGCCCACTTCCTCGCCGGCGCAGGTAATCTGTTCGTCAACGCCTCC
GGGGGGGTGCGACTTTAGATTCTGTTTTA----ACGTA-TCTGGTGTTGGTCGGTTGAGATACTCCTACTAGATTATTAT
TACGTATT---CAACTGTGTGCTCTGCTCTCGAGGCGTGCAGGCGTGCGGGGCATGGAGATCGGGGGCAAGTTCATCAAG
TTCACGGCCATCGGCGTCTACCTGCAGGCCGACGCCGCCGTCCCCGCGCTCGCCGCCAAGTGGGCCGCCAAGCCCGCCGC
CGACCTCGCCTCCGACGCTGCCTTCTTCCGCGACGTCGTCACCGGTAACTAATTCACGTACTACAACCGTCGACAGTTCC
ACTTCCACAACG----------TGCAATAACCAGTGGCCGGCGATGCAGGCGAGTTCGAGAAGTTCACGAGGGTGACGAT
GATCCTGCCGCTGACCGGCGCGCAGTACTCGGACAAGGTGACGGAGAACTGCGTCGCCTACTGGAAGGCCACCGGCGTGT
ACACGGACGCCGAGGCCGCCGCCGTCGACAAGTTCAAGGAGGCCTTCGGACCCCACAGCTTCGCCCCCGGCGCCTCCATA
CTCTTCACCCACTCCCCCGCCGGCGTCCTCACCGTCGCCTTCTCCAAGGACTCGTCCGTGCCGGAGTCCGGCGGCGTGGC
CATCGACAACGCCCGGCTCTGCGAGGCCGTGCTGGAGTCCATCATCGGCGAGCACGGGGTGTCGCCTGCGGCCAAGCTCA
GCCTGGCCACCAGGGTCGCCGAGCTGCTGAAGGGGGCCTCCCACGCCGGCGGCGAGCCGGCTGCGGAGCCCGTGTCGGTT
TCGGTGTGAACGAACCGG------TGCACCGCGCGTCCGTCACTCGTGTGGTGGTTTGTGTGGCTGGTGGTGTTCGTGGT
GGGACGTCGTGTTCCCTCCAGTTGCCTACGGTTTGTCGGTTTTCTTCCCTGCACATGCAACCGTGC--------GTGGAT
AACTATGAGTCTGTGATGATTTGTACTTGGATTAATAAAAAAACCTGCCGTTCTTTACATCTTA----------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S---S------S----S---S--------
--------------S----S---------------------------------------------SSSS-----------
--------------------S------S-----------------------------------------------S----
-SSSSSS-------------S---------------------------------S----S--------------------
-------S--S------S----S----------S----------SSS-SS-SSS-S------------------------
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---------------------S------------------------------------S-------------SS------
-------------------S-----S---------------------------------------------S--------
---------S-S--S-------------S-S----------------------SS----------------------SS-
---------------------SSSSS-------------------------S----------------------------
---------------S---------------------SSSSSS-------------------------------------
-----------------------------------------------------------S-------S------------
---S---------S--------S------S----SS-SS----------------------S------------------
--------SSS------------------S-------------------S--------------S---------------
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-----------------------------------------------------S-------SS----S-SSSS-------
-------------------------------------------S------------------------S--------S--
------------------------------------------S----------------------------S--------
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--------------S--------------------S--------------------------------------------
------S-------------------------------------------------------------------------
----------------------------S----------------------------------S----------------
----------S----S----------------------------------------------------------------
----S------------------------------------------------S-----------SSSSSSSSS------
-------------------------------------------S-----S--------------SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_265
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-----AGACGCGGGTGAAGAATCTG-------------------------------------------------------
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>reverse_1239
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--------------------------------------GTCTGGTGTTGGTCGGTTGA----------------------
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>forward_609
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-----------------------------GCTCCTGCGTGAGTTGAATG-------------------------------
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>reverse_2646
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-----TCAAATCCTGGTGCTCGCAT-------------------------------------------------------
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