>input_sequence_66112
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-------------------------------------------------------------------------------A
TGGACAACTGCGCCGACCAGAACCTTGCGCAGAGGAGCATTGGATTCTTCAGGGTGCCTGGTCTCTTTGTGCGGCTGAGC
AGCAAAGGCCTGAATGCAGTGGACCCTGATTCAGTCTGGAGCCCAACCTCTCCTCTGGATTTCAAGAACCTGCCGTCATC
AAACACCGTGGGCACCAATCTCAAGCCCACTGGACTGCTAGGCATCGAGGCTGATCTTCTGAAGCTCAGAACCGGCTCCC
AGAGAGTCGGTCTCGGCCTTGTCGATGCCCTCACCGCCGACGAGGGCTCGTTGCACTTTGGAGGCAAGAACTCCTTTCTT
GAATCCATCAAGCCATTTCTTGAGCTTGGGCTGCCAAAGGCGGCTGCC---GATGCATCATCGTGTCAGAAGACCGGTTC
GGTTGGCCATGGCGACGCCATGAACGAGAACACAGGCTTTGTTCAATGTGATTGTGAGGATGAAGAGTACACCTGCGTGA
TCGAGCATGGCCCGAACCCGAGGACGACGCACATCCTGAAAGGCCAGACGGTGGAGGTGCCCAACGGCGTCCGTTCCAAG
AGGCCGATTTTCACCATTGAGCCCATCGAGGAGCAGTCATGGCCATCGATGCCGGCTGGTGGTGCCA---CTTCTGGTTC
GTGCTCCTACTGTAGGAAGCGGCTGCGAGAGGACATGGACACCTTCATGTATCTGTGAGCACTGAAACGAT-TTTTGCTT
CCATCTGTTTTTATGTGGTTG--TGTTCAGTTGTTGAGTTTTGTGTTGGA------ATGCAGGGGCGAGAAGGCGTTCTG
CAGCAACGAGTGCAGGAAGTGCTGCATCGAGGAGGAGATGGATGAGGTGGAGGTGGAGCTCATGATGCTGGATTCCGGCG
GCTCCTCTGCTGATCTGCATTGGTGA------------------------------------------------------
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---------------------------------------------------------
>chr3B_1_TraesCS3B01G323700
CTAGGAGAGAGAGAGAGAGAGAGAGAGAGAGACGAGCCCGTTGCTTTTGCATGCTGCGTGTCCGCGCCGAGGACACTTGT
CTTCTCCCCATAAACACACCAGCAAGCGCACCCGAGAAACCACATGGAAAGCACGGAGGGGGAGGGGCA---GCAGCGAG
TCTAGA-----GCGAGAAGCAGAGTGCCCTGGAAGCCTCGCCCACCCCATT-CCCCCCTTTCTTCTCCCCTAGGGCTCTC
CGGCCCTTCTTAGTCCCGTCGCGCGAGGAGGGGCACCACCGCCT----GAGCATCCCCGCCCGGCCGTCGAATCGACCGC
GAGGTACGCA----------CACCCACTGCTACTACTCTCCCTGAGTGGAAAAGATGCGGCCGCACTTTCTAGATTTGTG
TATGCTTGGCCCAGAAGTTTTTGCGGTTCTTGGCTGGTTTCCCAGTCCGGGCCTCAGATTGGACGGCTTTCGTTTACTGG
TTGCTTGATTCGGCCGCGATTCGTGTCGCGTGATTCCTGGTCGGTGGTAATGCCGCCTTCGACCTTCCCTTTCATGGCCG
TCGCAGTGCCAGGTTATGGAGCTCGGAA--------CTGCATCCCTGTAAATCCTTGTTGAAGCAGCTGTTGGGATTTGG
GAGTAATAAGATTGGGGGGAGAAGAGCTTCTGCTGTTTATCCGTTCGGCTTGGTGTTCTTG-TTTTCTTACCTTGACCAT
GTTC---AAGTGACTGTAGTTTTCGGTCTTGCTTTTTGA--ATTTGCAAGGATGAGATGTTTGTGCTTGGAACCGGCAGG
CAATTTGTTAGTTTTCATTAAAAAATA--ATGTACCCGGTTAATCAATCATCGTTCTTTTCTTTTGTTCTCTTTGATTGA
TTGATCCTTTGACCCATATGAGTAAAAGCAAAAGCTGAAATCTATCTGAACTTTTCTTTGCTCTCGTCACTCACTGCTGA
CTGATCTGATACTAAAAAACAAACCGTTTGACTGTTTCAGAGACAACTTGCTAGTGCCTGTGCTCCTCAAGAGCAAGCCA
TGGACAACTGCGCCGACCAGAACCTTGCGCAGAGGAGCATTGGATTCTTCAGGGTGCCTGGTCTCTTTGTGCGGCTGAGC
AGCAAAGGCCTGAATGCAGTGGACCCTGATTCAGTCTGGAGCCCAACCTCTCCTCTGGATTTCAAGAACCTGCCGTCATC
AAACACCGTGGGCACCAATCTCAAGCCCACTGGACTGCTAGGCATCGAGGCTGATCTTCTGAAGCTCAGAACCGGCTCCC
AGAGAGTCGGTCTCGGCCTTGTCGATGCCCTCACCGCCGACGAGGGCTCGTTGCACTTTGGAGGCAAGAACTCCTTTCTT
GAATCCATCAAGCCATTTCTTGAGCTTGGGCTGCCAAAGGCGGCTGCC---GATGCATCATCGTGTCAGAAGACCGGTTC
GGTTGGCCATGGCGACGCCATGAACGAGAACACAGGCTTTGTTCAATGTGATTGTGAGGATGAAGAGTACACCTGCGTGA
TCGAGCATGGCCCGAACCCGAGGACGACGCACATCCTGAAAGGCCAGACGGTGGAGGTGCCCAACGGCGTCCGTTCCAAG
AGGCCGATTTTCACCATTGAGCCCATCGAGGAGCAGTCATGGCCATCGATGCCGGCTGGTGGTGCCA---CTTCTGGTTC
GTGCTCCTACTGTAGGAAGCGGCTGCGAGAGGACATGGACACCTTCATGTATCTGTGAGCACTGAAACGAT-TTTTGCTT
CCATCTGTTTTTATGTGGTTG--TGTTCAGTTGTTGAGTTTTGTGTTGGA------ATGCAGGGGCGAGAAGGCGTTCTG
CAGCAACGAGTGCAGGAAGTGCTGCATCGAGGAGGAGATGGATGAGGTGGAGGTGGAGCTCATGATGCTGGATTCCGGCG
GCTCCTCTGCTGATCTGCATTGGTGAAGATTGCTTGC--TTGCTAGTGGTGGTGGCGAGGAAGCGTTGCCCAC-AAGCGT
CTGTTCTTTCTTG-TTTTGGCCTGGAACTTAGTAGGACTCAGCAGCA-GGGAAGGGAGGGAGAAAAACGCTTCTCATTCT
GGTTTTTTGTATGAAT---GGAGGAGAGGTTTTGAATTTATCCAGTGTCTGCCATAGCGCAATGGCTGGACCATTTTCAT
GGGTATTGGGAGTATTCCTTTTTGGCTGTAAGACTGGTAGAAATACTCAAATATCGATGTGCCATAA-TATAT--TAATC
AATCAATTATATTACCCTCTTATATACGAGTATATTTTTTAG---------------------TCCTGCGAGTTGTGGCC
ACCCGAATTTGTTCTGCGCCGGGGCTGATTAATGATTGTTCA--------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------TCATAGAGAGCCTTTGTTACTC
TCTGCAGCTCATCGGCGAATGCTCCTGAGGAAAAGGTAAAAGTGAAAACTACAG-TAGTAGTATGATGCTCTGCTCTGGT
GGGCAGTCAGAAGCACTAACTACAGTCGCAGTGCAATTATCACCAGCTTTGCCATTCATTGTGCTGTAGCCCGCAGCTGC
A---GAGGGCCCTGTGT------AGCTACAGTACCATGTTGCATCGACATAAGGACGGGCGCAGGTAGGCAAGCCTAAGC
GCTTGACAGGATGGGTGCTACAGGCAAAACGCCAAGGGTATCCAATGCGCCCGGAGAAAGGAAAAAGGAGGACTCTTGAC
TTC------AGCGTCATTCATCGCTTGCGACTTCAGCAGATCAGCATCT-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------TGAACAAGGATCACCAACTTCTTT
TCCCAAGGGTCGTTTCAGTTTTCCTCGGGAGAGCGATTTACTTACATTTTTTTACATTTGGGAGCTGGTTCCACCACAAG
TAACCATGATGATCTATGCTCTGTTCGCGGTATATGATTTTTTTGACGATTGAAATAGGAAGAACACATAATTGTGAGAA
AGAGGCCTTTTTTTTTGCTTTCGAGAGTACAAAATTTCTTATTTTTCTTTATAATAA
>chr3A_36
-----------------------------------GCCCGTTGCTTTTGCATGCTGCGTGTCCGCGCCGAGGACACTTGT
CTTCTCCCCATAAACACACCAGCAAGCACGCCCGAGAAACCACATGGAAAGCACGGAGCG------------GCAGCGAG
TCTAGACTAGAGCGAGAAGCAGAGTGCCCCGGAAGCCTCCCCCACCCCATTCCCCCCCTTTCTTCTCCCC----------
-GGCCCTTGTTAGTCCCGTCGCGCGAGGAGGGGCGCCGCC----------GCATCCCCGCCCGGCCGCCGAATCGACCGC
GAGGTACGCACCCACCGTCCCACCCACTGCTACTACTCTCCCTGAGTGGAAAAGATGCCGCCGCGCTTTCTAGATTTGTG
TATGTTTGGCCCGGAAGTTTTTGCGGTTCTTGGTTAGTTTCCCAGTCCTGGCCTCAGATTGGACGGCTTTCGTTTACTGG
TTGCTTGATTCCGCCGCGATTCGTGTCAGATGGTTTCTGGTCGGTGGTAATGCCGCCTTCGACCTTCCCTTTCGTGGCCG
TCGCAGTGCCAGGTTATGGAGCTCGGAGTTTTATTGCTGCATTCCTGTAAATCCTTGTTGAAGCAGCCGTTGGGATTTGG
GAGTAATAAGATTGGGGAGAGAAGAGCTTCTGCTGTTTATCCGTTTGGCTTGGTGTTCTTG-TTTTCTTACCTTCACCAT
GTTCTTCAAGTGAGTGTAGTTTGCGGGGTTTTTTTTTTCTGATTTGCAAGGATGAGATGTTTGTGCTTGGAGCCGGCAGG
CAATTTGTTAGTTTTCATTAAAAAAAATCATGTACCCGGTTAATCAATCATCGTTCTTTT-----GTTCTCTTTGGTTGA
TTGATCCTTTGACCCATATGAGTAAAAGCAAAAGCTGAAATTTATCTGAACTTTTCTTTGCTCTCGTCACTCACTGCTGA
CTGATCTGATACTAAAAAACAAACCGCTTGACTGTTTCAGAGGCAACTTGCTAGTGCCTGTGCTCCTCAAGAGCAAGCCA
TGGACAACTGCGCCGATCAGAGCCTTGCGCAGAGGAGCATTGGATTCTTCAGGGTGCCTGGTCTCTTTGTGCGGCTGAGC
AGCAAAGGCCTGAACGCAGTGGACCCTGATTCAGTCTGGAGCCCAACCTCTCCTCTGGATTTCAAGAACCTGCCGTCGTC
AAACACTCTGGGCACCAATCTCAAGCCCACTGGATTGCTAGGCATCGAGGCTGATCTTCTGAAGCTCAGAACCGGCTCCC
CGAGAGTCGGTCTCGGCCTTGTCGATGCCCTCACCGCCGACGAGGGCTCGTTGCACTTTGGCGGCAAGAACTCGTTCCTT
GAATCCATCAAGCCATTTCTCGAGCTTGGGCTGCCAAAGGTGGCTGCCGATGATGCATCGTCGTGTCAGAAGACCGGTTC
GGTTGGCCTTGGCGCCGCCATGAAGGAGAACACAGGCTTCGTTCAATGTGATTGTGAAGATGAAGAGTACACCTGCGTGA
TCGAGCACGGCCCGAACCCGAGGACGACGCACATCCTGAAAGGCCAGACGGTGGAGGTGCCCAACGGCGTGCGTTCCAAG
AGGCCGATTTTCACCATCGAGCCCATCGAGGAGCCGTCATGGCCGTCGATGCCGGCTGCTGGTGCCGCCGCTTCTGGTTC
GTGCTCCCACTGCAGGAAGCGGCTGCGAGAGGACATGGATACCTTCATGTATCTGTGAGCACTGAAACCATTTTTTGCTT
CCATCTGATGTGATATGGTGTGTTGTTCAGTTGTTGAGTTTTGTGTTGGGTTTGGAATGCAGGGGCG---AGTTGTTCTG
CAGCAACGAGTGCAGGAAGTGCTGCATGGAGGAGGAGATAGACGAGGTGGAGGTGGAGCTCATGGTGCTGGATTCCGGCG
GCTCCTCTGCTGATCTGCATTGGTGAAGATTGCTTGATGTTGCTAGTGGTGGTGGCGAGGAGGCGTTGCCCACAAAGCGT
CTGTTCTTTCTTTATTTTGGTTTGGAACTTGGTAGGACTCAGCAGCAGGGGAAGGGAGGGAGAAAAACGCTTCTCATTCT
GGTTTTT-GTATGAAT---GGAGAGGTTTTG----ATTTAGCCAGTGTCTGCCATAGCGCAATGGCTGGACCATTTTCAT
GGGTATTGGGAGTATTCCTTTTTGGCTGCAAGACTGGTAGAAATACTCAGATATCGATGTGCCATAA-TATATTATAATC
AATCAATTATATTACCCTCTTATATATTTTTTAAAAA--------------------------TCCTGCAAGTTGTGGCC
ATCCGAGTTTGTTCCTGCAAG--------------TTGTGCA--------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------TCATAGAGAGCCATTGTTGCTC
TCTGCTGCT------------CTCCTGAGGAAAAGGTAAAAGTGAAAACTACAG-TAC-AGTATGATGCTCTGCTCTGGT
GGGTAGTCAGAGGCACTAACTACAGTCGCAGTGCAATTATCACCAGCTTTGCCATTCATTGTGCTGTAGCCGTCGCAGCA
GCAGGAGGGCCCTGTGTAAGCGAAGCTACAGTACCATGTTGCATCGACATAAGGACGGGCGCAGGTAGGCAAGCCTACAG
TACGA---------GTGCTACAGGCAAAACGCCAAGGGTATCCAATGCGCCCGGAGAAAGGAGAATGGAGGACTCTTGAC
TTCAGCGTCAGCGTCATTCATCGCTTGCGACTTGAGCATATCAGCATCTGCAGGTGATACGGGAGCTTAGATGCTCCCGT
GATACGAACTCCCTCGAACCGTTCGATCAGACAACCAACGGCCACAAACAGAGCTCCTGCAACTTTGCAGAAAAATGCTT
CCAGAATCTGATATTTACGTGCAAGTCCAAAAGGATGGCTGTCACCCTTACATCTCTCATCCAATGGCTCACGAAAACCC
GTATCATGGTAGCACCTAAAACTCTTGTATCACCTGATATTTTGTCATCAGGATCTTGAACAAGGATCACCAACTTCTTT
TCCCAAGGGTCGTTTCAGTTTTCCTCCGGGTAGAG---------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------
>chr3D_36
-----------------------------------GCCCGTTGCTTTTGCATGCTGCGTGTCCGCGCCGAGGACACTTGT
CTTCTCCCCATAAACACACCAGCAAGCA----------ACCACATGGAAAGCACGGAGGGGGAGGAGCAGCAGCAGCGAG
TCTAGA-----GCGAGAAGCAGAGTGCCCTGGAAGCCTCCCCCACCCCATT-CCCCCCTTTCTTCTCCCCA---------
---CCCTTCTTAGTCCCGTCGCGCGAGGAGGGGCGCCGCCGCCTGAGCGAGCATCCCCGCCCGGCCGCCGAATCGACCGC
GAGGTACGCATG--------CACCCACTACTACTACTCTCCCTGAGTGGAAAAGATGCCGCCTCCCTTTCTAGATTTGTG
TATGCTTGGCCCAGAAGTTTTTGCGGTTCTTGGCTGGTTTCCCAGTCCGGGCCTCAGATTGGACGGCTTTCGTGTACTGG
TTGCTTGATTCCGCCGCGATTCGTGTCGCGTGATTTCTGGTCGGTGGTAATGCCGCCTTCGACCTTCCCTTTCGTGGCCG
TCGCAGTGCCAGGTTATGGAGCTCGGAGTTTTATTGCTGCATTCCTGTAAATCCTTGTTGAAGCAGCCGTTGGGATTTGG
GAGTAATAAGATTGGGGGGAGAAGAGCTTCTGCTGTTTATCCGTTTGGCTTGGTGTTCTTCCTTTTCTCACCTTGACCAT
GTTC---AAGTGACTGTAGTTTTCGGTCTTGCTTTTTGA--ATTTGCAAGGATGAGATGTTTGTGCTTGGAACCGGCAGG
CAGTTTGTTAGTTTTCATTAAAAAAA-TCATGTACCCGGTTAATCAATCATCGTTCTTTT-----GTTCTCTCTGATTGA
TTGATCCTTTGGCCCATATGAGTAAAAGCAAAAGCTGAAATTTATCTGAACTTTTCTTTGCTCTCGTCACTCACTGCTGA
CTGATCTGATACTAAAAAACAAACCGCTTGACTGTTTCAGAGACAACTTGCTAGTGCCTGTGCTCCTCAAGAGCAAGCCA
TGGACAACTGCGCCGACCAGAGCCTTGGACAGAGGAGCATTGGATTCTTCAGGGTGCCTGGTCTCTTTGTGAGGCTAAGC
AGCAAAGGCCTGAATGCAGTGGACCCTGATTCAGTCTGGAGCCCAACCTCTCCTCTGGATTTCAAGAACCTGCCGTCATC
AAACACCGTGGGCACCAATCTCAAGCCCACTGGATTGCTAGGCATCGAGGCTGATCTTCTGAAGCTCAGAACCGGCTCCC
CGAGAGTCGGTCTTGGCCTTGTCGATGCCCTCACCGCCGATGAGGGCTCGTTGCACTTTGGAGGCAAGAACTCCTTTCTT
GAATCCATCAAGCCATTTCTTGAGCTTGGGCTGCCAAAGGCGGCTGCC---GATGCATCCTCGTGTCAGAAGACCGGTTC
GGCTGGCCTTGGCGCCGCCATGAAGGAGAACACAGGCTTTGTTCATTGTGACTGTGAAGATGAAGAGTACACCTGCGTGA
TCGAGCACGGCCCGAACCCGAGGACGACGCACATCCTGAAAGGCCACACGGTGGAGGTGCCCAACGGCGTCCGTTCCAAG
AGGCCGATTTTCACCATCGAGCCCATCGAGGAGCAGTCATGGCCGTCGATGCCGGCTGCTGGCGCCGC---TTCTGGTTC
GTGCTCCCACTGCAGGAAGCGGCTGCGAGAGGACATGGACACCTTCATGTATCTGTGAGCACTGAAACCAT-TTTTGCTT
CCACCTGTTTTTATGTGGTGTGTTGTTCAGTTGTTGAGTTTTGTGTTGGA-TTGGAATGCAGGGGCG---AGGCGTTCTG
CAGCAACGAGTGCAGGAAGTGCTGCATCGAGGAGGAGATCGATGAGGTGGTGGTGGAGCTCATGATGCTGGATTCCGGCG
GCTCCTCTGCTGGTCTGCATTGGTGAAGATTGCTTGC--TTGCTAGTAGTGGTGGCGAGGAGGCGTTGCCCACAAAGCGT
CTGTTCTTTCTTTATTTTGGTTTGAAACTTGGTAGGACTCAGCAGCAG-GGAAGGGAGGGAGAAAAACGCTTCTCATTCT
GGTTTTT-GTATGAATGGAGGAGAGGTTTTG----AGTTATCCAGTGTCTGCCATAGCGCAATGGCTGGACCATTTTCAT
GGGTATTGGGAGTATTCCTTTTTGGC-GTAAGACTGGTAGAAATACTCAGATATCGATGTGCCATAAATATAT--TAATC
AATCAATTATATTACCTTCTTATATATCTTTTAATCCTGCAAGTTGTGGCCATCCGAATTTGTTCCTGCAAGTTGTGGCC
ATCCGAATTTGTTCCTGCAAG--------------TTGTGCATCGGAGCAACTCCAATGGGGCGACCCATTAAAGGGGAC
CAACGTTGCGTATCCAAACGGACGCGTGTTCGTTTTTTGTCCGCACCCGTTCCCGGCCCATTTTTTAGCCTGATTTGCGT
CGGTGCGGACACGCGACGGACGCGCGCGCGGTCGCCTACTCTTGTCCCCGGGCCCGCTGGTCTGTGGCACATTGGCCTCC
CTCCTCCTGGCCAACAAGCAACCCTCGCCCCCCGTCGCCTCCGTCACCGACGCCGCCGCCCATTTTTGCGGCAACTCTTC
CAGCTGCCGCCGCCTCCACATCCGCCCAGCAACGCCGCCCCTGCCCCCAGTCGCCCGCGGCCGCCGTTTTGCCGCCGGGG
AGCAAACTGGTTCCCGCCGCCATTTCCCCCACCGCACAGCCGCCCGCGACCAAGAAGACGCCTCGCCGCCCCCGCCACAT
ACGACCGGCACGCTCGTCGGACGCTGTCACACTCGTCGGATGCCGGCAGGGCAGCTAGCTGGTCTGTGCGCGCCGCGTCT
CCCCTCGTCGGCCGTCTCCTTCTTCGACGCCCGCAAGTTGTTCGACAGTTTGCCAAGGTACGAAAATGGACTCCGCCGAC
GAGTTCTTTTTCCACAATTTCATTTGCGACTCCGACGATTCGTCGTCCCACGACGAGGAGGAGATATTGGCTGCCGTGTT
GGTCCATCACCACCTCAACAACCAGCGGCTGTTGTTCCGTGGCTCCATTCCGGGCCACCTTCCGGCGTTGAATCGTAACC
GAGAGAGTGGGCATTTCCTTCTCTGGAAGGACTACTTTGATACAACAAACCCGTTGTTCAAACATCACAAATTCCGCCGC
CAGTTCCGTATGAGTAGGCATGTTTTCAACCGTATTAGAGAGGGAGTGGTCGGCTATGATGACTACTTCGAGTGCAAAGA
GGATGCCGTCGGCAAGATTGGTTTCTCCTCTTATCAGAAATGCACTGCCGCCATCCGAATGCTTGCATACGGAGTGCCCG
GTGATCTCATTGACGAGTACGTCCGTATGAGCGAGTCTACATGCCTAGAGTCCCTGTATAAGTTCTGCAAGGCTGTGATT
GATGTGTTTGGCCCTGAGTACTTGAGAGAGCCGACAGCTGCAGATACAGCCCGTTTGTTGGCGATGAATGCTAGCAGGGG
CTTCCCGGGGATGCTTGGCAGCATAGACTGCATGCACTGGGAGTGGAAGAACTGCCCTTCTGCTTGGCAAGGGCAGTATA
AGAGACATGTCAGGGCTTGCACTGTCATACTAGAGGCCGTGGCGTCTCAAGATCTCTGGATCTGGCACTCTTTCTTTGGC
ATGGCTGGATCACACAATGATATCAACGTGCTTCAGCACTCGCTGGTGTTTGCTAGGCTTGCCGAAGGCAACAGCCCACT
GGTGAACTTTATTGTCAACGGCCACAACTACGACAAAGGGTACTATTTGGGTGACGGTATCTATCCTCAGTGGACCACTA
TTGTAAAGACAATACCCAATCCTGTTGGAGAGAAAAGAAAAAGATTTGCCCAAGAGCAAGAAAGTGCTAGAAAGGATGTC
GAGCGTGCCTTTGGTGTTTTGCAATCTCGATGGGGCATCGTTCGGTATCCTGCTAATACTTGGAGCACGCAGAAACTATG
GGAGGTGATGACTGCTTGTGTGATCATGCAGAATATGATCGTAGAAGACGAGCGCCCGGAACGTCTGTACGATCAAGGCT
TTCAGTTTCAGGGTGAGAATGTTGTGCCTGAGCATGGAGTAGCGGCAACGTTTGAGCAGTTCACTCAGTTTCATGAAGAC
ATGCGTGATTGGGAAACTCACGTGCAACTGCAAAATGATTTGGTTGAGCATATGTGGACTCATGTTGGCAACCAGTAGGT
GCGTCTTCTTTTATTCGTTTGCAAAACTATGTGAAACATTTTTATTTTTATTTGGCCTGTAAACTATACTATTTATTTGG
GCGGACTATTTTGTTTGTTAAATTTTCATTTCATAATATGTTGAATGCAATGCAAAATTGGGCGGCCAGCCGGACACACC
TGTACATATGGGTCGGCGCGTTGAGCGCGCTGCCGACCCATATGAAAAACAGGACGGACGCCGGGCGGGCGGCCGACTCA
AACGGATAAAAAACGGACGAAATCGCTGTCCGTTTGAGTCGGCCTGTTGGAGTTGCTCTCATAAAGAGCCATTGTTACTC
TCTGCTGCT------------CTCCTGAGGAAAGGTTAAAAGTGAAAACTAGTACTAC-AGTATGATGCTCTGCTCTGGT
GGGTAGTCAGAGGCACTAACTACAGTCGCAGTGCAATTATCACCAGCTTTGCCATTCATTGTGCTGTAGCCCGCAGCTGC
A---GAGGGCCCTGTGG------AGCTACAGTACCATGTTGCATCGACATAAGGACGGGCGCAGGTAGGCAAGCCTAAGC
GCTGGACAGTACGGGTGCTACAGGCAAAACGCCAAGGGTATCCAATGCGCCCGGA-------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------------------
---------------------------S-S-----------------------------------S--------------
---------------------------------------S------------------------------SSSSSSSSSS
S---------------------------------S--S-----------------------------S------------
----------------------------------------------------------S-----S---------------
--------------------------------------------------------------------------------
-----------S-----------------------S-------------------------------------S------
---------------------------S--------------S------------------------S------------
---------------------------------------------S----------------------------------
--------------------------------------------------------------------------------
-------------------------S----------------------------------SSSSS---------------
-----------------------------------------S--------------------------------------
--------------------------S-----------------------------------------------------
---------------------S----------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------S---------------------------------------------
S-------------------------------------------------------------------------------
-----------------------------------------------------------S--------------------
--------S-----S---------S--------------------------------S----------------------
-------S------------------------------------------------------------------------
-----------------S--------------------------S-------------S-------S-------------
-------S----S-------------------------------------------------------S-----------
-------------------SS----------------------------------------------SSS----------
---------------------------------------S----------------------------------------
-------------------------------------------------------------S------------------
------------S-------SS--------S-------------------------------------------------
-------S---------------SS-SSS-SSSSS---------------------------------------------
-------------------------------------------------S------------------------------
--------------------------SSSS-SS--SS-SS-S---------------------------S----------
-S------------SSSSSS-SSSSSSSSSSSSSS----S----------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------S---------
-----S---SSSSSSSSSSSS------------------------------------SS---------------------
---S-------S--------------------------------------------------------------------
--------------------------------------------------------------------------------
---S-----S-S--------------------------------------------------S--S--------------
---------------------------------S----S-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------S--SS--S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_554
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------------GCCTTCGACCTTCCCTTTCA------
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>reverse_1455
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------ACGCCATGAACGAGAACACA----------------------------------------------
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>forward_603
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------ATGGAGCTCGGAACTGCATC-------------------------------------
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>reverse_2279
--------------------------------------------------------------------------------
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--------------------------------------TTAGTCCTGCGAGTTGTGGC----------------------
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