>input_sequence_66076
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----------------------------------------ATGGAGGACGACCCTGATTCCGCTTCGCTTGAGGTGGATA
CAGAGTACCCCATCACTGTTTCGCTCGGGAGGACGGAGGAGGATCCTGATT-CAGATTCCGCTTCGCTTGCAGTTGAGGT
GGATGTAGAGCACCCCATCACTGTTTCGCTCGGCCCCATGGGTCGCCTCCTCCGGCGACTCCATTCATTCCAGGCTTCCG
ACCACCGTCTGCCAGAGGGGCTTAGTGCGAACGGGATCCGGCTTCTCAGAGAAGGGCTGGAACGATTGTACAACCACCTC
AAGAATGCGCCGGAGGCAGATGTGGACAACCCTAGCTTCGCGCCGAAATGGTGGATCAAGGAGGTCCGAGAACTTGCTTA
CGACACGGAGGACTTCTTCGACGAGGTTATGCAGTCCGGTGACGGCGT------------------CGTTGTCGGCAGAA
GCGCCCCCCTTGGTACC------A---TATTTGGAATTA---------GGAAGCAGCGCCTGCCCCAGATTGCACAAGAT
TTCTCACAGTTAATGGCCCGTGTGGATGATGCGAAAAAAAGATGCCAAAATTTCCGGTTTGCTCTGGAGACGGCCGTCAT
CATCAGATCTCAAAGAGTACAAGCCGGTATCAGCTGCCACACGCCTGAACTGCCCCTCGACCTGCCGGTGTTGGCTGTGC
AGAT------------------------------------------------GGAACCCATGAAGAAGCTTGTTAACTTG
CTTGCTTTCGGCGACGACAACCAGAAACAGCTCAAGGTGTTACCTATCCTTGGATCTGCAGGAGTTGGAAAAACGATGGT
TGCCAGAACAATATATCATCAGCATGGAGGGGAATTCCAGTGCCGGGCTTTTGTACGGGTGTCCCGAAATGCCGATATGA
GGTGGCTTCTCACCAGCATCCTCTCACAAATTAAAGCAC------CAG--ACTCATTCCTTTACTGA-------------
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-----------------------------------
>chr5D_1_TraesCS5D01G492000
CTGCTTCACCCTTCCTCTCTGGGGAAATCCAACAACTCCATCACGAGTAGCAAAGAGCCGTAAGAAGGTGACTCCACTAA
CCAGCACACGCTGCTTGCAAGTGACCATAACTGTGGACCCAATGAAATAATGCTAGACAACGACATAAAGCCGAACACTA
GCACAAAGGCCGAAGACTACCCTACCCATACTATGTACAAGAGCAACCCTAGATCCCCTCCCTTCCCCACTTTGGACGGC
AACACAGGCTGAGGAATATGAGAGGAGAGCCAGGCGAGACGAGGTGGCTCTTAGAAGGATGGACGAGCGAGAAGGAAGGG
GCAAATGAGAGCCTCTGGTTGGCTTTTATTTTGTGCCCCATTAGGACAACTCCAATGCGGATCACCAAACCTTCCGTAAA
CATCCCGATCGAGCTGTCTGGACCTTTCTTTGCCATCCAACGCCGTTTGTCAAGTGTTCGCGAATGCGTCTAGATGTCTG
AAATCCGACAAATTACGCCTAAACTTGTGGGAGGTTGGATACGCCAACTCAACCTGGACCCCACCACAAACCCACCTTTT
CTCCTCCTCCCTTCTCTCTCTCCTTTTTCATTGGACAAGGGACACATATTTGAAATATGGTTGGATGACCGGCCCCCCTA
TCGGTATGCACGGACGTGTCCGTGGACATTTTGTGTGTCCGATTCGGTGATCCATGTTGGAGTTGCTCTTAACCTGTGTA
GCAAATGTATTGAGTTCGCCGAGATAAACCGTAGTAAAATATAAAATAAATTAAAAGAGGGGGAGCATTTTTTTGTTCAG
AATGAGAGGGAGTATATATATCTTAGAAAGCCGTAGCAGATGCGTAGGGTGAGTTGTGTTGCTTCCCCACGCCAACCACG
GGACATTTTCCTGGTAAATTTTCCCCTCGCGCTTGGCATGTTTTGTCGTGCTTTTCGATCTTCTTATCCATGGAAACCAT
TAATCAGACACAGATTATCTTGTGCATTCTTCAGGTGCGGATGGAGGACGACCCTGATTCCGCTTCGCTTGAGGTGGATA
CAGAGTACCCCATCACTGTTTCGCTCGGGAGGACGGAGGAGGATCCTGATT-CAGATTCCGCTTCGCTTGCAGTTGAGGT
GGATGTAGAGCACCCCATCACTGTTTCGCTCGGCCCCATGGGTCGCCTCCTCCGGCGACTCCATTCATTCCAGGCTTCCG
ACCACCGTCTGCCAGAGGGGCTTAGTGCGAACGGGATCCGGCTTCTCAGAGAAGGGCTGGAACGATTGTACAACCACCTC
AAGAATGCGCCGGAGGCAGATGTGGACAACCCTAGCTTCGCGCCGAAATGGTGGATCAAGGAGGTCCGAGAACTTGCTTA
CGACACGGAGGACTTCTTCGACGAGGTTATGCAGTCCGGTGACGGCGT------------------CGTTGTCGGCAGAA
GCGCCCCCCTTGGTACC------A---TATTTGGAATTA---------GGAAGCAGCGCCTGCCCCAGATTGCACAAGAT
TTCTCACAGTTAATGGCCCGTGTGGATGATGCGAAAAAAAGATGCCAAAATTTCCGGTTTGCTCTGGAGACGGCCGTCAT
CATCAGATCTCAAAGAGTACAAGCCGGTATCAGCTGCCACACGCCTGAACTGCCCCTCGACCTGCCGGTGTTGGCTGTGC
AGAT------------------------------------------------GGAACCCATGAAGAAGCTTGTTAACTTG
CTTGCTTTCGGCGACGACAACCAGAAACAGCTCAAGGTGTTACCTATCCTTGGATCTGCAGGAGTTGGAAAAACGATGGT
TGCCAGAACAATATATCATCAGCATGGAGGGGAATTCCAGTGCCGGGCTTTTGTACGGGTGTCCCGAAATGCCGATATGA
GGTGGCTTCTCACCAGCATCCTCTCACAAATTAAAGCAC------CAG--ACTCATTCCTTTACTGATGCACAGGACCTT
ATTCACAGCATCATCAAACATCTTCAAGGAAAAAGGTACTTATATCCCTATTGTTTGGAAAACAAAATGGTATGTTTAGG
CCAGGACTGTTTGGATTGCTGGAAATGCATTAAAAAACACATGTATCTTGCTTCCGTACAACCGCTACAGAAGTTTAGTA
GCGTCAAAGCAAAAAAATAGTTATTGATGGGAAATGATAAATCTGTACATGTTATTTGAATCCGGTTTTCCTACCTTATC
CCGCGTATA-------ATTCCCTATTTTCTCATGCCAAACAGTCAAAGATGAAATTAGTGCCATGCTTTATTAAAAAGAA
TGTATTGCA-ATGGTTCTAGCATCGATCAGATCCATATCAGGATGCACGTGTCATGCTTCCATGATGGAAGTCGTGCTCA
ATGTCTCTTGATTTGAGGAAGAGGATTGGGTGCCTCTACGCAAAGAAAATCAGTCTTGTCTGGTCGCAATAATGTATAGG
GAATTAGGGATTAGGAACATTCACATATTAGGATACATCGACCAGGTTGATTTGATCCATGTGTTAGTTTTATGAACAAA
CATGGATTTATAATGAATTCCTGATTCAGATGTGAATAGAAGTAAGAAATCTAGGATATATATATATATATATTAAACTA
ATGCAGATTTTCGATGGGACCAAAATTTAGAAGAGATTGTAATTAGGATAAGGGGCGAAACCAGAACACATTATTAGTAC
ACATTTGCCCTTGTCATTAATAACTACTTTTGCGTTGCACTGGAGCAAAACTCGTCTTGTTTGTGTGGGATTTTCAGATG
TTCAGGCATTTGGATTGCAGGGAAGTCAATGAATTGGAAATAGTAGGTTATCTAAAGGAATTTACCTTAATTTTCTACAT
ATTTCAGCTAGAAGAAAGGACGACTCCAATAGAAACCCTAGTTGGTTATTTGGATTGTAAGATTGTTATTGGATTTTGAT
AGAATGTGCTTTTTCTGATAAATTTTAATAAAACA
>chr5B_1066
CGGTGAA-------------------------------------------------------------------------
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-------------------------------GACGGAGGACGACCCTGATACCTGATTCCGCTCCGCTTG------AGGC
GAAAATGGAGGATCCCGTCACGGCTTCGCTCGGCCCCATGGGTCGCCTCCTTCGGCGACTCCATTCGCTGGAGGCTTCCG
ACCACCCTCTGCCGAAGGGGTTCACTGCGAACGGGATCCGGCTTCTGAGAGAGGGCCTAGAAGGATTGTGCGACCACCTC
AAGGGTTTGCCGGAGGCAGATCTGGACAACCCTGGCTTCACGCCCAAATGGTGGACCAAGGAGGTCCGGGAACTTGCTTA
CGACGCGGAGGACTTCTTCGACGAGGTTATGCAGTCCGTTGCCGGCGGCGGCGGCGCCGGCA---------TCAGCAGAA
GCGCTCCTCTTAGTACTACTACTA---TATTTGGGGTTACCAGTAAGCGGAAGCAGCGCCTGCCCCAGATTGCACAAGAT
TTCTCACATTTAATGGCTCGTGTGGATGATGCGAGAGGAAGATGCAAAAATTTCCATCTTGCTCCGGAGACAGCCATCAA
------ATCTGACCATGGACAAGCCAGTACCAGCGGCCACACACCTGAACTGCCTCTCAACCTGCCGGTGTCGACCGTGT
CA---------------------ACCGCCGGCCATAGCCTGGTTGGTGTCGAGGAACCCATGAAGAAGCTTGTCAACTTG
CTTGCTTTCAGTGACGACCAGCAGAAGCAGCTCAAGGTGATACCCATCTTTGGATCTGCAGGAGTTGGAAAAACGACAGT
TGCCAGAGCGATATATCATCAGTTTGGAGGAGAATTCCAGTGCCGGGCTTTTGTACGGGTGTCCCGGAATCCTGATATGA
GGAGGCTTCTCACCAGCATCCTCTCACAAATTAAGGCGCCAGGGGCAGGGGCTCACACCTTTTCTGATGTGCAGGACCTT
ATTGACTGTATCATCAAACATCTTCATCAGAAAAGGTA--TT--CCCCTATTGTTTCGAAAACAAACTGGTATGTTTAGC
CCAGGGCTCTTCGGATTGCTGGAAATGCAT--------------------------------------------------
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>chr5D_1127
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-------GAGGATCCCATCACGGCTTCGCTCGGCCCCATGGGTCGCCTCCTCCGGCGACTCCGTTCGCTGGAGGCTTCGG
AACACCCTATGCCGGAGGGGCTCAGTGCGAACGGGATCCGGCTTCTGAAAGAAGGTCTAGAAGGATTGTACGACCACCTC
AAGGGTTTGCCGGAGGCAGATCTGGACAACCCTAGCTTCACGCCCAAATGGTGGACCAAGGAGGTCCGGGAACTTGCTTA
CGACACGGAGGACTTCTGCGATGAGGTTATACAGTCCGGCGGCGGCGGCGGCGGCGGCAGCA---------GCGGCAGAA
GCGCTCCTGTTAGTGCC------A---TATTTGGAGTTACCAGTAAGCGGAAGCAGCGCCTGCCCCAGATTGCACAAGAT
TTCTCACTTTTAATGTCTCGTGTGAATGATGCCAGAGAAAGATGCAAAATTTTCCAGTTTGCTCCGCAGACAGCCATCAA
------ATCTGACCATGGACAAGCCAGTACCAGCAGCCACACTCCTGGACTGTCGATAGACATGCCTGCGTTGACCGCGA
TAG---------------------CCGCCGGCCATAGCCTAGTTGGTGTCGAGGAACCCAGGAAGAAGCTTGTCAACCTG
CTTGCTTTCGGCGACAATCAGCAGAAACAGCTCAAGGTGATACCTATCTTTGGATCTGCAGGAGTTGGAAAAACGACAGT
TGCGAGAACAATGTATCATCAGTATGGAGGGGAATTCCAATGCCGTGCTTTTGTACGGGTTTCCCGGAATCCTGATATGA
GGAGGCTTCTCACCAGCATCCTCTCACAAATTAAGGCAC------CAGGAGCTCACACCTTTTCTGATGCGCAGGACCTT
ATTGACTGTATCATCAAGCATCTTCATCAGAAAAGGTA--TT--TCCCAATTGTTTCGAAAACAAACTGGTATGTTTAGG
CTGGGGATCTTTAGATTGCTTGAAATGCATAGGAAAA---ATGAGTCTTGCTTTTGT-----------ACAAGTGTACTG
ATCTC-AAAGTAAAAAACAGTTATCAATGAGAAAGAGTCCCGTAAATGT--TTTCTTGAATCGGATTTTTCTACTTATCA
TGAGTAATTGATTGCTATTCCCCATTTTCTCATGCCAAACTG------------TTAGCACCATGCTTTATTCAAACAAG
AACTGTTTTCATGGTTCTAGTGCCAAGCAAATACATACCCTGATGCACG--TCATGCTTCCCTGAAGGAAATCGTGCCCA
ATATCTCTTGAGTTGATGAGGAGGAT------------------------------------------------------
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>chr5B_1133
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-------------CCCATCACGGCTTTGCTCGGCCCCATGGGTCGCCTCCTCCGGCGACTCCATTCAATCGAGGCTTCCG
ACCACCCTCTGCCAGAGGGGATTAGTGCGAACGGGGTCCGGCTTCTCAGAGAAGGTCTAGAAGGATTGTACGACCACCTC
AAGGATGTGCCGGATACAGATCTGG---ACCCTGGTGTCACGCCCAAATGGTGGATCAAGGAAGTTCGGGAACTTGCTTA
CGACACGGAGGACTTGTTCGACGAGGTTATGCAATCCGGTGCCGGTGATGGCGTT------------GCTGTCGGCAGAA
GCTCTCCTCTTGGTACC------ACCATAATTGGGATTATCAGTAAGCGGAAGCAGCGCCTGCCCCAGATTGCACTGGAT
TTCTCACATTTAATGGCTCGTTTGGATGATGCGAGAGAAAGATGCAAAAGTTTCCAGCTTGCTCCGGAGACAGCCATCAA
------ACCTGACCATGGGCAAGCCAGTACCAGCCGCCACACACCTGACCTGCCCCTCGACCTGCCGGTGTCGGCCGTG-
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>chr5A_1308
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----------------------------ACCCTAGCTTCAAGCCCAAGTGGTGGACCAAGGAAGTCCGGGAACTTGCTTA
CGACACAGAGGACTTCTTCGAAGAGGTTATGCAGTCCCGTGGCGGTGGCGGTGGCGGCGACGGCGCCGTTGTTCGCAGAA
GCGATTGTCTTTGTACC------A---TCTTTACGGGA------------AAGCAGCGCCAGCTCCAGATTGCAGATGAT
TTCTCACAATTAATGGCTCGTGTGGATGATGCCACAGAAAGATGGCAAAGTTTGCTGCTTGTTCCGGAGACAGCTATCAA
------ACCTGACCGTGTGCAAGCCGGTATTAGTTACCGCATGCCTGAACTGCCCCTCGACCTGCCGGTGTCAACTCTGC
CCAACTCCGGCGTCCAGGTGGACACTGCCGGCCATAACATAATTGGTGTCGAGGAATCCATGGACAGGCTTGTTAGCTTG
ATGGCTTTCGGCGATGCCAACCAAAAACAACTGAAGGTGGCACCTATATTTGGATCTGCAGGTGTTGGAAAAACAAAGAT
TGCCAGAACAATATATCATCAGTATGGAGGGGAATTCCAGTGCCGGGCTTTTGTACGGGTGTCCCGAAATCCCGATATGA
GGAGGCTTCTCACCTGCATCCTCTCACAAATTAAGGCAC------CAGGGACTCATGCTTTTTCTGATGCGCATGACCTT
ATTGACAGTATCGTCAAACATCTTCAAGGGAAAAGGTA--TATTTCCATGTTGTTCTGATTTTTTTTTC-TATGTTTAGG
CCAGGGCTGTTTGGATTGCTGGAAATGCATACTCAAAATGTGT----TTGCTTACATACAGCCCCTACACAAGTTCACTG
ATACC-AAAGCACAAA--AGTTATTAATGAGAATGACCAAATCTGTAAATGTCATTTGAATCTCATTGCCCTACCTTATC
ACGCGAATA-------GTTCCCAATTTTCTCATGCCAACCTATCAAA-ATGGAATTAGAGCCAAGCTTTATTCAAAAAGA
ATTATTGCA-----------------------------------------------------------------------
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>SNPs
-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S--S------S--S---------S------SSSSSS---S
-S-SS-S---S-S--------S-S-------------------------------------------S--S---------
------S------------------------------------------------S--S---S--------S--------
---S---S-------------S-----------------S----S-----------------------S-----------
-----------------------------------------S-----S--------------------------------
----S--S------------------------------------------------------------------------
--------S--------S----------------S-S------------------S--------S------S---S---S
SSSSSS----S-SS-S----------------------------------------------------------------
SS-S----------------------------------------------------------------------------
---------------------------------------S--------S---------------------------S---
----------------------S-----------------------------------------------S---------
--S-------------------------------S---------------------S-----S-------S---------
---S----S--------------------S--------SS---S------------S---------S-------------
-----S------------------------SSS----SSS---SS--------S------S--S-----S-------S-S
SSS--S--SSS------S-------S---S----SSS----------S--------------S-S---------------
S----S----------------S-----------------S------S---S------S-------------S----S--
SS------------------SSS-S-S--S--S----S-SS--------SS----------S---S----S------S--
--S--------S----S--S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_247
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-------------------------------------------------------------------CACTTTGGACGGC
AACACAG-------------------------------------------------------------------------
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>reverse_1052
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-----------ATCACTGTTTCGCTCGGGAG-------------------------------------------------
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-----------------------------------
>forward_332
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------------------------------------------------------------------------AGGAAGGG
GCAAATGAGAGC--------------------------------------------------------------------
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>reverse_2361
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----------------------------------------GGATGCACGTGTCATGCTTC--------------------
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-----------------------------------
