>input_sequence_66072
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----------------------------------ATGGACTTCGACGACCACGACGACGGCGACGAGGAGATGCAGATGT
CCATGCCCATGCCGGTGAGCTCCAGCTACGAGCCTCCACCGCCTCTGTCCACGGGGTTTGGCGGCGCCGGGGTTGCGCCC
AACAAGCCTCCTGGTGGTGGTGGTGGTG---GTGGTGGTGAGCTTGGCGGCCGTGCCAAGGCCCCCGGCGGCGGTGCCAG
GTACCGCGAATGCCTCAAGAACCACGCGGTCAGTATCGGAGGGCACGCCGTCGACGGCTGCGGCGAGTTCATCGCCGCCG
GCGAGGAGGGCAGCATCGACGCGCTCCGCTGCGCCGCGTGCAACTGCCACCGCAACTTCCACCGGAGGGAGTCCGACTTC
CCCGCGGGGGGCGAGGGCTCGCCCTTCTCTCCAACCGCAATGGTCCCCTACGGAGGCGTGCCG---CACCACCAGTTCTC
GCCCTACTACCGCACCCCGGCGGGCTACCTGCACCACCACCAGCACCACATGGCCGCGGCCGCCGCCGCCGCCGCGGCAG
CCGCAGGGCACCCGCGCCCGCTCGCGCTCCCGTCCACCTCCCACAGCGGCCGCGACGACGCAGACGAGCTGTCGGGCATG
GCGGCGGGGCCCATGTCGGCGCTGGCCCCGCTGAGCAGCATGTCCCTTGGCGCCGGCCCGTCGGGGTACGGCTCCGGGTC
CGGGTCCGGCAAGAAGCGGTTCCGCACCAAGTTCACCCAGGAGCAGAAGGACAAGATGCTGGCCTTCGCGGAGCGCGTGG
GGTGGCGCATCCAGAAGCACGACGAGGCGGCCGTGCTGCAGTTCTGCGACGAGGTGGGCGTCAAGCGCCACGTCCTCAAG
GTGTGGATGCACAACAACAAGCACACCCTCGGCAAGAAGCCGCCCAGCATTTGA--------------------------
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>chr5B_1_TraesCS5B01G243800
CCACGTTTTATTCCTCCGTCATTTCGCCATGGACGGACGGTCGGCCCTACGCCCGTCCTGCTTCAGTACTTGGTTCGCAT
G----------------GAGCTAGTTTATGGTAGTCTCTA-------AACCTGAAGCCGAGCGAGCGGTAGAAACGCACT
GCG---TTACCATCCTCGACGTCTTCTGCT-----CTACATGGTCGACGGACGGTAGAAACGCAACGCACAGTGTGCAGG
AGGAGC---ACAGCGAGGGTTTTGTATGCTTGCGTGTGGTGCAGAGACTACTACTTAATCAGGACCTGAAAATGACGTGT
TGCGCACTTCGATGCTCTGGGGAAAGACTAGCT---CTAGCGTTGCTTACATCACTCGACCCGGAAAACAGTTTTGGGTT
AGAGTAAATAAATTTGCTTGACGCTGCCGGAGAGGCCTGTCCATGCATCTAGCGGCATGGCCTTCATGAATTTCATTTCA
CCTC----------------------------------------------------------------------------
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--------CTGAAAAAAACACAAGAAGCGGGATAATGTGTTGACCATGCTC----TAGACACGAGTAATAAGAAAAGAAA
AGAGATGCAAAGACCAGAAGTCACGATCAAATATTCGGA----ACTCCAATTTAAAAGGCATTGGAGCCAAACCGGATGA
AAAGGGCGGGGCGGAGAGGGACAGCCAGCAAAGACATGAGCACGAAGCAAAAGAACAT---ACATCACGCCTCGGCCGGG
ATGCACACAGGGAGAGAGAG----GAGAGGGGAGATCAGACAAGTGCGCGACTCGAGACGGAGG----CGGTGAACAGGA
GAGAAAGCGAGTTCGCTACAGAGAGAGAAGCT----AGGGAGGGAGAGGGTTACATCATCGCCTAGGC----GCTGCAGC
AGCCTTGGTGCAGCGGCGCGTCGTCAAAACTGGCAGCTAGCCAGATGGTGTCCACACTCTCTCCTGCGTCTCTTATCCCT
TCATCCCAGTTTTAACCCTTGCTAAG-CCCCTCTTAGCCCGGCCTCCCCTCGAGAACACGCCGGCAAAC-----CCAGAG
GCTTAGCCTGGCTACACACGGGCCGTCGGCGAGCATGGACTTCGACGACCACGACGACGGCGACGAGGAGATGCAGATGT
CCATGCCCATGCCGGTGAGCTCCAGCTACGAGCCTCCACCGCCTCTGTCCACGGGGTTTGGCGGCGCCGGGGTTGCGCCC
AACAAGCCTCCTGGTGGTGGTGGTGGTG---GTGGTGGTGAGCTTGGCGGCCGTGCCAAGGCCCCCGGCGGCGGTGCCAG
GTACCGCGAATGCCTCAAGAACCACGCGGTCAGTATCGGAGGGCACGCCGTCGACGGCTGCGGCGAGTTCATCGCCGCCG
GCGAGGAGGGCAGCATCGACGCGCTCCGCTGCGCCGCGTGCAACTGCCACCGCAACTTCCACCGGAGGGAGTCCGACTTC
CCCGCGGGGGGCGAGGGCTCGCCCTTCTCTCCAACCGCAATGGTCCCCTACGGAGGCGTGCCG---CACCACCAGTTCTC
GCCCTACTACCGCACCCCGGCGGGCTACCTGCACCACCACCAGCACCACATGGCCGCGGCCGCCGCCGCCGCCGCGGCAG
CCGCAGGGCACCCGCGCCCGCTCGCGCTCCCGTCCACCTCCCACAGCGGCCGCGACGACGCAGACGAGCTGTCGGGCATG
GCGGCGGGGCCCATGTCGGCGCTGGCCCCGCTGAGCAGCATGTCCCTTGGCGCCGGCCCGTCGGGGTACGGCTCCGGGTC
CGGGTCCGGCAAGAAGCGGTTCCGCACCAAGTTCACCCAGGAGCAGAAGGACAAGATGCTGGCCTTCGCGGAGCGCGTGG
GGTGGCGCATCCAGAAGCACGACGAGGCGGCCGTGCTGCAGTTCTGCGACGAGGTGGGCGTCAAGCGCCACGTCCTCAAG
GTGTGGATGCACAACAACAAGCACACCCTCGGCAAGAAGCCGCCCAGCATTTGACGGACCCCGCTCCCCCTGGCCGGCGA
CCGTCCGCGT------GCACGATGCGTCTGGCG--------TCCTGGGCCAGAGCTGAGCTAGCTGATCGCCCCACCGTC
A----CCGTGGCTAGCCTCCGATAGGTACCTGCATGTGCTTCTCTTGTTCAGCTTAGCTATA----GCATTCGCGCTTGA
CGACGTTCCCCTCCGCGG----CGGTGCATGGCTAGCTTACATTAGGTTAATCTGTAGCGAGCGTTCCTTCGTTCTTGGC
TGGATTAATTTAGGTGGTCCTCTATTTTATTTCATTTTTATTTCTATTTACTGTTGCTCA---AATTCCTAGCTGTGGCG
CCATGGGCGTTTGCTGATTTCGTTCTTGCTGGGGAATGTACTGCCTGATCGATCAGCTAGCTGGCGAGGTATTGTATCTG
GGGATCGGGGCTGCCTGCATGGCCATGGATTCCGTGCGTGCTCCTGAGTACTCCTATTTTTTTTCCTTTTCGTTCTTGTC
GTCGCTAGCTG-AGCTGCG------TGCCTTGGGACAATTTTACTGATGGGTCCAGGTTTGCTAGTCGCTATTCCCCGCC
TGCGTGCCATTGCTACTCCTAAAGAAGATAGACAACTGTTGCATTCCGTTCTTTGCTGAGCTATTTTCCTCC---CCACC
TCACTCACTTTGGGCATTTGTTCGGGT--------GCTTAATTCTGCACAGACCAATGCTTCCCGTCCCCTCCATTGATC
CAGGGATAAAAAAAAAAGATCAGTTCTGCCCAGCGCGATGATCCATGCAGCAGAACTGTAGCAGCACACTCCATGACGTG
CTCCACTGTTCTTGGCCCGATTTTTCTGTCTTTCTCGCCATGAATCAATGCGACCGTTCGCCCGCGTCCTGCCCCCGCAT
TTAACTCCCGCGTCTCGCGAGCAATGTTAAGGTT---------CTTCTCCTCCTCCTTGATTAGTTCTGCCCGCATTAAG
GGCCTCTGGCTCTTTCTGCCGATTTTACTCGCTTCTGCCCTGCATACCTTTCCGTTTTTACTCCCGCCAT
>chr5D_1
CCACGTTTTATTCCTCCGTCATTTCGCCATGGACGGACAGCCGGCCCTACGCCCGCCCAGCTTCACTACTTGCTTTGCAT
G----------------GAGCTAGTTTATGGTAGTCTCCA-------AACCTGAAGCCGAGAGAGCGGTAGAAACGCACT
GTG---TTACCATCCTTGACGTTTTCTTCGCTACACTACATGGTCGACGGACGGTAGAAACGCAACGCACAGTGTGCAGG
AGGAGC---ACAGCGCGGGTTTTGTATGCTTGCGTGCGGTGCAGAGACTACTACTTAATCAGGACCTGAAAATGACGTGT
TGCGCACTTCGATGCTCTGGGGAAAGGCTAGCTTGGCTAGCGTTGCTTGCATCACTCGACCCGGAAAACAGTTTTGAGTT
AGGGCAAATAAATTGCTCGAGAGGTTTGGC---------------CATCTAGCGGCATGGCCTTCATGAATTTCATTTCA
CCTGCTGGAACACTTGCACACCCCCCCGCCCGTCTTTTGGTTTATTTTCAGTCGGTGTCCTGTAGCTCAAGAACGTGTTG
GTTTTCGTTTTTTTTTTGTAGGAAGTGTTGGTTTTCGTTAATGAAAATCGGAGGGGTGCGAGCCCTTCTTTTATTAAAAA
AAAACCTGCTGG----AACACAAGAAGAGGGGTCGTGTGTTGACCATGTTC----CAGACACGAGTAACAAAAGAAAA--
----ATGCAAAGACCAGATGTCACGATCAAATATTCCGA----ACCCCAATTTAAAAGGCATTGGAGCCAAACCGGGTGA
AAAGGGCGGGGCGGAGAGGGACAGCCAGCAAAGACATGAGCACGAAGCAAAAGAACAC---ACATCACGCCTTGGCCGGG
ACACACACAGGGAGAGAGAG----GAGAGGGGAGATCAGACAAGTGCGCGACTCGAGAGGGAGG----CGGTGAACAGGA
GAGAAAGCGAGTTCGCTACACAGAGAGAAGCTAGGGAGGGAGGGAGAGGGTTACATCATCGCCTAGGC----GCTGCAGC
AGCCTCGGTGCAGCGGCGCGTCGTCAAAACTGGCAGCTAGCCAGATGGTGTCCACACTCTCTCCTGCGTCTCTTATCCCT
TCATCCCAGTTTTAACCCTTGCTAAGCCCCCTCTTAGCCCGGCCTCCCCTCGACAACACGCCGGCAAACCCAGCCCAGAG
GCTTAGCCTGGCTACACACGGGCCGTCGGCGAGCATGGACTTCGACGACCACGACGACGGCGACGAGGAGATGCAGATGT
CCATGCCCATGCCGGTGAGCTCCAGCTACGAGCCCCCGCCGCCGCTCTCCACGGGGTTTGGCGGCGCCGGGGTTGCGCCC
AACAAGCCTCCTGGTGGCGGTGGTGGTGGTGGTG------AGCTTGGCGGCCGTGCCAAGGCCCCCGGCGGCGGTGCCAG
GTACCGCGAGTGCCTCAAGAACCACGCGGTCGGCATCGGAGGGCACGCCGTCGACGGCTGCGGCGAGTTCATCGCCGCCG
GCGAGGAGGGCAGCATCGACGCGCTCCGCTGCGCCGCGTGCAACTGCCACCGCAACTTCCACCGGAGGGAGTCCGACTTC
CCCGCGGGGCCCGAGGGTTCGCCCTTCTCTCCCACCGCAATGGTCCCCTACGGAGGCGTGCCG---CACCACCAGTTCTC
GCCCTACTACCGCACCCCGGCGGGCTACCTGCACCACCACCAGCACCACATGGCCGCGGCCGCCGCCGCCGCCGCGGCAG
CCGCAGGGCACCCGCGGCCGCTCGCGCTCCCGTCCACCTCCCACAGCGGCCGCGACGACGCCGACGAGCTGTCGGGCATG
GCGGCGGGGCCCATGTCGGCGCTGGCCCCGCTGAGCAGCATGTCCCTCGGCGCCGGCCCGTCGGGGTACGGCTCCGGGTC
CGGGTCCGGCAAGAAGCGGTTCCGCACCAAGTTCACCCAGGAGCAGAAGGACAAGATGCTGGCCTTCGCGGAGCGCGTGG
GGTGGCGCATCCAGAAGCACGACGAGGCGGCCGTGCTGCAGTTCTGCGACGAGGTGGGCGTCAAGCGCCACGTCCTCAAG
GTGTGGATGCACAACAACAAGCACACCCTCGGCAAGAAGCCGCCCAGCATTTGACCGGCG--------------------
----CCGCATGCAACCGGAGACCACCCCAAGAAAAAAGAGCTCCTGGGCCAGAGCCGAGCTAGCTGATCGCCCCACCGTC
ACCGGCCGTGGCTAGCCTCCGATAGGTACCTGCATGTGCTTCTCTCGTTCAGCTTAGCTATA----GCATTCGCGCTTGA
CGACGTTCCCCTCCGCAG----CGGTTCATGGCTAGCTTACATTAGGTTAATCTGTAGCGAGCGTTCCTTCGTTCTTGGC
TGGATTAATTTAGGTGGTCCTCTATTTTATTTCATTTTTATTTCTATTCACTGTTGCTCATGTAATTCCTAGCTGTGGCG
CCATGGCCATTTGCTGATTTCGTTCTTGCTGGGGAATGTACTGCCTGATCGATCAGCTAGCTGGCGAGGAATTGCATCTG
GGGATCGGGGCTGCCTGCATGGCCATGGATTCCGTGCGCTCTCCTCGAG-----TATTTTTTTTCCTTTTCGTTCTTGTC
GTCGCTAGCTGGAGCTGCG------TGCGTTGGGACAATTTTACTCATGGGTCCAGGTTTGCTAGTCG---CTA-CCGCC
TGCGTGCCATTGCTACTCCTAAAGAAGATAGACAACTGTTGCATTCCGTTCTTTGCTTAGCCATTTTCCTGC---CCGCC
TCACTCACTTTGGGCATTTGTTCGGGT--------GCTTAATTCTGCACAGACCAATGCTTCCCGTCCCCTCCATTGATC
CAAG------AAAAAAAGATGAGTGCTGCCCAGCGCCATGATCCATGCAGCAGAACTGTAGCAGCACGCTGCATGACGTG
CTCCACTGTTCTTGGCCCGATTTTTCTGTCTTTCTCGCCATGAATCAATGCAACCGTTCCCTCGCATCCTGCCCCCGCAT
TTAACTCCCCCATCTCGCGAGCAATGTTAAGGTT---------CTTCTTCTCCTCCTTGATTAGTTCTGCCCGCATTAAG
GGCCTCTGGCCCTTTCTGCCGA-TTTACTCGCTTCTGCCCTGCATGCCTTTCCGTTTTTACTCCCGCCAT
>chr5A_1
CCACGTTTTATTCCTCCGTCATTTCGCCATGGACGGACAGCCGGCCCTACGCCCGTCCTGCTTCAGTACTTGGTGTGCAT
GGAGGCTTGGGAAGTGCGAGCTGGTTTATGGCTGCGTCCAAAACGTGAACCTGGAGCCGAGCGAGTGGTAGAAACGAACT
GTATTATTACCACCCTCGACGTTTCCTTCGCTACACTACATGGTCGACGGACGGTAGAAACGCGACGCACAGTGTGCAGG
AGGAGTGCAACAGTGAAGGTTTTGTACGCTTGCGAGCGGTGCAGGTGCTAGCACTTAATCAGGATCTGAAAATGACGGGT
TGCGCACTTCGATGCTCTGGGGAAAGGCTAGCTTAGCTAGCCTTGCTTGCATCACTCGACCCGGGAAACAGTTTTTGGTC
-GAGAAAATAAATTTGCTTGACGCTGCATGGCCT----------------------------TTCATGGATTTCAATGCA
CCTC----------------------------------------------------------------------------
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--------CTGG----AACACGAGAAGCGGGATCCTGTGTTGACCATGTTCTTGCTAGACACGAGTAACAA---AAGAAA
AGAGATGCAAAGACCAGATGTCACGATCAAATATTCCGAGAGAACCCCAATTTAAAAGGCGTTGGAGCCAAACCGGGTGA
AAAGGGCGGGGCGGAGAGGGACGGCCAGCAAAGACACGATCACGAAGCAAAAGAACATACTACATCACGCCTCGGCCCGG
GCACACACAGATAGAGAGAGAGGAGAGGGTGGAGATCAGACAAGTGCGCGACTCGAGAGGGAGGGAGGCGGTGAACAGGA
GAGAAAGCGAGTTCGCTACAGAGAGAGAAGCTAGGGAGGGAGGGAGAGGGTTACATCATCGCCTAGGCCGCTGCAGCAGC
CTCCTCGGTGCAGCGGCGCGTCGTCAAAACTGGCAGCTAGCCAGATGGTGTCCACACTCTCTCCTGCGTCTCTTATCCCT
TCATCCCAGTTTTAACCCTTGCTAAG-CCCCTCTTAGCCCGGCCTCCCCTCGGCAAC-----------------CCAGAG
GCTTAGCCTGGCTAGGCACGGGCCGTCGGCGAGCATGGACTTCGACGACCACGACGACGGCGACGAGGAGATGCGGATGT
CCATGCCCATGCCGGTGAGCTCCAGCTACGAGCCCCCGCCGCCGCTCTCCACGGGGTTTGGCGGCGCCGGGGTTGCGCCC
AGCAAGCCTCCTGGTGGTGGTGGTGGTGGCGGTGGTGGCGAGCTTGGCGGCCGTGCCAAGGCCCCCGGCGGCGGTGCCAG
GTACCGCGAGTGCCTCAAGAACCACGCGGTCGGCATCGGAGGGTACGCCGTCGACGGCTGCGGCGAGTTCATCGCCGGCG
GCGAGGAGGGCAGCATCGACGCGCTCCGCTGCGCCGCGTGCAGCTGCCACCGCAACTTCCACCGGAGGGAGTCCGACTTC
CCCGCGGGGGGCGAGGGCTCGCCCTTCTCTCCCACCGCAATGGTCCCCTACGGAGGCGTGCCGCCGCACCACCAGTTCTC
GCCCTACTACCGCACCCCGGCGGGCTACCTGCACCACCACCAGCACCACATGGCCGCGGCCGCCGCT------GCAGCCG
CGGCGGGGCACCCGCGGCCGCTGGCGCTCCCGTCCACCTCCCACAGCGGGCGCGACGACGCCGACGAGCTGTCGGGCATG
GCGGCGGGGCCCATGTCGGCGCTGGTCCCGCTGAGCAGCATGTCCCTGGGCGCGGGCCCGTCGGGGTACGGCTCCGGGTC
CGGGTCCGGCAAGAAGCGGTTCCGCACCAAGTTCACCCAGGAGCAGAAGGACAAGATGCTGGCCTTCGCGGAGCGCGTGG
GGTGGCGCATCCAGAAGCACGACGAGGCGGCCGTGCTGCAGTTCTGCGACGAGGTGGGCGTCAAGCGCCACGTCCTCAAG
GTCTGGATGCACAACAACAAGCACACCCTCGGCAAGAAGCCGCCCAGCATTTGACGGACCCCGCTCCCGCTGGCCGGCCA
CCGTCCGCATGCAACCGCACGGCGCATCTGGCG--------TCCTGGGCCAGAGCCGA---------TCGCCCCACCGTC
ACCGGCCGTGGCTAGCCTCCGATAGGTACCTGCATGTGCTTCTCTCGTTCATCTTAGCTAGCTACCGCATTCGCGCTTGA
CGACGTTCCCCTCCGCGGCTAGCGGTGCATGGCTAGCTTACATTAGGTTAATCTGTAGCGAGCGTTCCTTGGTTCTTGGC
TGGATTAATTTAGGTGGTCCTCTATTTTCATTTCATTTCATTTCTATTTACTGTTGCTCATGTAACTCCTGGCTATGGCG
CCACGGCCATTTGCTGATTTGGTTCTTGCTGGGGAATGTACTGCCTGATCGATCAGCTAGCTGGCGAGGAATTGTATCTG
GGGATCGGGGCTGCCTGCATGGCCATGGATTCCGTGCGTGCTCCTGAGTAGGAGTAATTTTTTTCCTTTTCGTTCTTGTC
GTCGCTAGCTGGAGCTGCGTGCGTCTGCGTTGGGACAATTTTACTCATGGGTCCAGGTTTGCTAGTCGCTACTA-CCACC
TGCGTGCCATTGCCACACCTAAAGAAGATAGACAACTGTTGCATTCCGTTCTTTGCTTAGCCATTTTCCTCCCCGCCTCC
TCACTCACTTCGGGCATTTGTTCGGGCACGGGGTAGCTTAATTTTGCACAGACCAATGCTTCCCATCCCCTCCATTGATC
CGAG------GAAAAAAAAATG---------AGCGCCATGATCCATGCAGCAGGACTGTAGCAGCACGCTCCATGACGTG
CTCCACTGTTCTTGGCCCGATTTTTCTGTCT--CTCGCCATGAATCAATGCAACCGTTCGCTCGCGTCCTGCCCCCGCAT
TTAACTCCCTCGTCTCGCGAGCAATGTTAAGGTTCTTCTCCTCCTCCTCCTCCTCCTTGATCAGTTCTGCCCGCATTAAG
GGCCTCTGGCCCTTTCTGCCGA-TTTACTCGCTTCTGCCCTGCGTGCCTTTCCGTTTTTACTCCCGCCAT
>SNPs
--------------------------------------S-S----------------------------------S----
--------------------------------------S-----------------------------------------
-S--------------------S----S-S--------------------------------------------------
------------------------------------S-------------------------------------------
--------------------------S---------------------S-------------------------------
----S----------------------S--SSSSSSSSSSSSSSS-----------------------------------
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-----------SSSSS-----------------SS-------------S-------------------S--S-S------
------------------S-----------------S--------S------------------------------S---
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-SS-------------------------------------------------------S---------------------
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-----S--------------------------------------------------------------------------
-----------------------------------------------------S--------------------------
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----------------------------------S--S-----S--S---------------------------------
--------------------------------------S-----------------------------------------
---------S---------------------S-S----------------------------------------------
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--------------------------------S-----------------------------------------------
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----------------S--------------------------------------------S------------------
-----------------------------------------------S--------------------------------
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--------------------------------------------------------------------S---------S-
--------S------------SS--S-----------------------------S------------------------
---------------------------------------------S----------------------------------
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------S-S------------------------------------------------------------S----------
--------------------------------------------------SSSS--------------------------
----------------------------S----------------S-------------------------S-SS-----
---------------------------------------------------------S---S---------------S--
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--S-SSSSSS----------S---S-----------S------------------------------S------------
---------------------------------------------------S---------S------------------
---------S----------------------------------------------------------------------
----------S-----------S----------------------S------------------------
>forward_190
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----------CATCCTCGACGTCTTCTGCT--------------------------------------------------
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>reverse_1450
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---------ATGCCTCAAGAACCACGCG----------------------------------------------------
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>forward_277
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----------------GGGTTTTGTATGCTTGCGTGT-------------------------------------------
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>reverse_2487
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------GCGTTTGCTGATTTCGTTCT------------------------------------------------------
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