>input_sequence_66035
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------------------------CTGTGCTCGAGAATCAAGGCATGAAAGCGACGACACCTCGCGGCGGCGGCGTGGAG
ACTGCCAAGCCCAAGAAGAGGAAGAAGGCCGGCGCGGGTGGGTTCATCTTTGGCTGCGGCGGCTCCAAGTCGGTGGCCGT
CGTCGCAGACAATCTCTCCACGATGGCACTGGCCAAGTCGTCGTCGTCGTCGTCGAGCGCCGCAGCAATGGCGAAGCCAG
CCCCGGCAGCGAAACCGACGGCGCTGGCCTGCCAGGACGCCGAGGGCGCGCCGAGCGTGGACGCGCTCCTGGGCCAGCTC
CGCGAGCTGGAGCGCGGCGTGCGCGCGCTGGGCGTCCGCGCCCGGGAGGAGGACGGCGTGGCGCAGGCGTGCCGGTGCAG
CGCGGGGCCGCCGCGGCACCGGCGGGACGCGTGGGGAGGCGGGCGCGGGCGGCTGGAGGAGGAGAGCGTGGCGGTGGTGA
CGGAGACGGAGGACCCGCTGGGCGAGTTCCGGCGGTCCATGGCGGAGATGGTGGTGGAGAACGGGATCACGGGTGGCGCG
GAGCTGCGGGAGCTGCTGCAGCGGTTCCTGTCGCTCAACTCGGCGCGCCACCACCACCTCATCCTCCGCGCCTTCGCCGA
CGTATGGGAGGAGCTCTTCGCCGGCGACCCCACGCAG---ATGCTGAAGCAGAAGCAGAAGCGTCCTGCTGTCTCCCCTG
CCGGCCACAGCGCCCGGGCGAGCAGCTAGCTGCACGTACGCA--------CGCACTGACACGTTAACTACAGTCCGTAAA
CTCCCCCATG----CACGCACCCGCCCTCGGGAGTTGTTGCCGTCCGATCCGATGAAAACATGCAACTCGGCCTCATGTG
A----------------------------------------------TGACCTGAGTCTGAATCAGTTCTCTCCTCCGTT
AATCCTGTAAAGATCTCATC------------------------------------------------------------
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>chr5A_1_TraesCS5A01G492400
AAGTTGAGGTATATATGCCGAAGTGAAGCGACGAGAGAGAGAGAGACGCAACGGATCGACACATACATGCGGATGAAATG
AAATGAAATGAATGGGACAGCA----AGCAAGCAAACAAAGTGGCGTCCGGTTCCAGCACA--CACCGCGTTTCTTCCAA
GGCATGTAGAT-----GTAGTAGT-------ACTGTATTAGTTTGTAGCGACAGTAGGACCCTTCTCCTCTGATCCACAA
ATCAAATTGGT-------TATGTATAATCAGGCCCGTATCGTACGTGATCCAAATCTCCCGCCACCTCGCCCGCTGGCGC
TTCCCTCGTCTTGCTCCCTGTTCCGCCCGCTGCAGGTAGCGCGGGACGGACGCAAGCGTCGTGGATCAGGAGACGCTAGC
TTTGCCGTTGGTTTCCCGGTCGTAGCTT-------------CGTTTCTGGGCCTTGCTTGCGTGGACCTGTAGTTGTCTT
GCGGATGCAAGCCTACGGCTACGGTACGTCCC-----TCTCATGGAGGTGGACATCACCGCAAGGAAACGCAAGCGGGCG
CAGCCAGTGCGCGCTGAGTTTTAGTTTTTGGAGACTCGATCGTCCGGA-------ACACGTACGCTAGCCTGCATGCGTC
TCACCGTCGTTTCGGCAACCATGCAAGGCATGCCGTGCGCTGATGGAAACACCGTTTTTTCTTCTTTCA-TTTCATTTCA
TCTGGTTCGTGCTAATTATTACTGCTGGT--------GGCATTCAGTCGGCTTACCAGACAGTGACACTGACCACCGAAC
AGCTGGTGCTCTGATACTGCTAGTTTTTAGTCGATTGAAATCCAGTTACTTGGATCTATATGCGTGTCTCTCTCTCTGCA
CTCTGCACACGCCACTAGAGTGCAACGTGCCCGCAACAAAAGAATTGTGTGACACTAGTGCTGCTGCAGCTTCCTGCGCG
CTCGGTTTCACTC---CACCCGGCTCTTCTTAAGCCCGAGCACTAGTTCCTTTTCTTCCCTTAGCTCTTCCTCGCTAGCC
AAGTACCCGGCCAG--CACACTGACTGTGCTCGAGAATCAAGGCATGAAAGCGACGACACCTCGCGGCGGCGGCGTGGAG
ACTGCCAAGCCCAAGAAGAGGAAGAAGGCCGGCGCGGGTGGGTTCATCTTTGGCTGCGGCGGCTCCAAGTCGGTGGCCGT
CGTCGCAGACAATCTCTCCACGATGGCACTGGCCAAGTCGTCGTCGTCGTCGTCGAGCGCCGCAGCAATGGCGAAGCCAG
CCCCGGCAGCGAAACCGACGGCGCTGGCCTGCCAGGACGCCGAGGGCGCGCCGAGCGTGGACGCGCTCCTGGGCCAGCTC
CGCGAGCTGGAGCGCGGCGTGCGCGCGCTGGGCGTCCGCGCCCGGGAGGAGGACGGCGTGGCGCAGGCGTGCCGGTGCAG
CGCGGGGCCGCCGCGGCACCGGCGGGACGCGTGGGGAGGCGGGCGCGGGCGGCTGGAGGAGGAGAGCGTGGCGGTGGTGA
CGGAGACGGAGGACCCGCTGGGCGAGTTCCGGCGGTCCATGGCGGAGATGGTGGTGGAGAACGGGATCACGGGTGGCGCG
GAGCTGCGGGAGCTGCTGCAGCGGTTCCTGTCGCTCAACTCGGCGCGCCACCACCACCTCATCCTCCGCGCCTTCGCCGA
CGTATGGGAGGAGCTCTTCGCCGGCGACCCCACGCAG---ATGCTGAAGCAGAAGCAGAAGCGTCCTGCTGTCTCCCCTG
CCGGCCACAGCGCCCGGGCGAGCAGCTAGCTGCACGTACGCA--------CGCACTGACACGTTAACTACAGTCCGTAAA
CTCCCCCATG----CACGCACCCGCCCTCGGGAGTTGTTGCCGTCCGATCCGATGAAAACATGCAACTCGGCCTCATGTG
A----------------------------------------------TGACCTGAGTCTGAATCAGTTCTCTCCTCCGTT
AATCCTGTAAAGATCTCATCGTACGTACGTACATTTCCCGTGAATGTTGCGTGCCATTGTTGCTCTGTTTGCTACTCCCT
CCGTTCGAAATTACTTGTCTCGGAAATAGATGTATTTAGAACTAAAATACATCTAGATACATTCATTTCTACGACAAGTA
ATTCCGAACGGAGGGAGTACTTCTCACGCGTTGCGTGCGTTGCCTCTGGTGG---TCGACC------------AAACACG
AATCGACAGGCGGAAGCAGCGGGAGATGGGCGGCTGATCGCCATGGATCCACGACCATCATGAGGCCGAGTTGCTGGATG
CTTGGTGGGAG------------AGGGCGTGGTCTGCTCGTCGCCTCGTCGGGCGGCAGCAAAGGGCACGAGCCCACCAA
ACATTCTGGTTCGGTCGCGGGGTCGATGGTGAGATATCGAGTACTTAAACGGGATCGAATTGATTGACTGACTGACTGAT
TGATTGAT----GTGACCTGCGTCGGTGCGAGATC----GATCGTGCGCGCCAAGCCTCACCCCGTGACTGAAAATGCCG
GCCCGGTTGCTTGGGCAGGCATCGGATCGCGGCATGTTTGCCGGCGATCGCAAGGAACATATATCCCGTCGATCGCCCCT
CTGACGCCCGTGCTAGTCCGGAAATACTTGTCATCCGTGCTAGTATTTGTTAGTTGTCGTGGTTCGTACCCATGCCTCTG
TGTCTGTA--GGTGCTCGACATAGAAATTCCATGACTTTTCCCGGGTGTCACCTGCCACGGGTGCTTCACAAATACTATA
ACAAACTATGCAC---TTCATATGGCTGGGTCAATTAGCATGTGATGCATGCGTCCAACGATTACGCCGAATGATGAGCT
GATTGACTGGAAGCGCGCGGCCGGCTGCGGTGTTAGTTGCAGGATCATGCATGCATGGAGTACCATATGGTGGGTGGATG
CATGCTGCCTACGGAAACGGGGACCGGGGAGAATACAAAAACCATGCACACCATCGTGCCACATGATCTCCGTCTGATGA
AACGCTTAGTTATAAAATGG
>chr4B_49
------------------------------------------------CAACGGATCGACACATGCGG---------ATG
AGATGAAATGAATAGGACAGCAACTCAGCAAGCAAACAAAGTGGCGTCCAGTCCCAGCACAAGCACAGCGTTTCTTCCAA
GGCATCTCAGCTCATAGTAGTAGT-------A--GTATTAGTTTGTAGCGACAGTAGGACCCCTCCCCTCTGATCCACAA
ATCAAATAGGTTAGTACATATGTATAATCAGGCCCATCCCATGAT-----CAAATCTCCCGTCACCTCGTTCGTTGGCGC
TTCCCTCGTCCGTTTATCTGTTCCGTCCGCTGCAAGTAGCGCGGA-----------------------------------
----CCGCTAGTTTCCCGATCGTAGCTTGCTAGCTTAGGTCCGTTTCTGGGCCTTGCTTGCGTGGACTAGGACTTGTCTT
GCGGATGCAAACCTACGGCTACCGTACGTACCTCTCATCTCATGGAGGTGGACATCACCGCAAGAAAACGCAAGCGGGCG
CAGCCAATGCCCGCTGAATTTCA-------GAGACTCGATCGTCCGGACTCCGGAACACGTACGCTAGCCTGCATGCGTC
TCACCGTCGTTTCGGCAACCATGCCGGTCGCGCTGTGCGCTGATGGAAACGCTGTTTTTCTTTCTCTTTTTTTCAGTTCA
TCTGGTTCGTGCTAATTATTACTGCTGGTCAGCTGGTGGCAATCAGTCGGTTTACCAGACAGTGACATTGACCACCGAAC
AGCTGGTGCTCTGATACTACTTGTTTTTAGTCGATTGAAATCCAGTTACTTGGATCTATATGCGTGTCTG--TCTCTGCA
GCCTGCACACGCCATTAGAGTGCAACGTGCCCGCAACAAAAGAATTGTGTGACGCTGGTGCTGCAGCTTCCTG--GCGCG
CTCGGTTTCACTC---CACCCGGCTCTTCTTAAGCCCGAGCTCTAGTTCCTTTTCTTCCCTTAGCTA--CCTCGCTAGCC
AAGTAGCCAGGCCAGTCACACACACTGCGCTCGAGAATCAAGGCGTGAAAGCGACGACACCTCGCGGCGGCGGCGCGGAC
ACTGCCAAGTCGAAGAAGAGGAAGAAGGCCGGCGCGGGCGGGTTCATCTTTGGCTGCGGCGGCTCCAGGTCGGTGGCCGT
CGTCGCAGGCAATCTCTCCACGATGGCACTGGCCAAGTCGTCGTCGTCGTCG---AGCGCCGCGCCAACGGCGAAGCCAG
CGCCCGCAGCGAAGCCGACGGCGCCTGTCTGCCACGACGCCGAGGGCGCGCCGAGCGTGGACGCGCTCCTGCGCCAGCTC
CAAGAGCTGGAGCGCGGCGTGCGCGCGCTGGGCGTCCGGGTCCTGGAGGAGGACGGCGTCGCGCAGGCGTGCCGGTGCAG
CGCGAGGTCGCCGCGGTACCGGCGGGACGCGTGGGGAGGTCGGCGCGGGCGGCTGGAGGAGGAGAGCGTGGCGGTGGTGA
CGGAGACGGAGGACCCGCTGGGCGAGTTCCGGCGGTCCATGGCGGAGATGGTGGTGGAGAACGGGATCACGGGCGGCGCG
GAGCTGCGGGAGCTGCTGCAGCGGTTCCTGTCGCTCAACGCGGCGCGCCACCACCACCTCATCCTCCGCGCCTTCGCCGA
CGTCTGGGAGGAGCTCTTCGCCGGCCCCGGCCGCGACCCCATGCAGAAGCAGAAGCAGAAGCGCCCTGTTGTCTCCCCTG
CAGGCCACAGCGCCCGGGCGAGCAGCTAGCTGCACGGCACGTACGTACTGCGCACTGACAAGTTAACTACAGTCCGTAAA
CTCCCCCATGCACGCACGCACCCACCCTCGGGAATTGTTGCCGTCCGATCCGATGAAAACATGCGCCGCGTGCATGGTTT
TCAGTGCCGTGATGAGAAGGAGCGTGCA------TGTGGCTGGCACCTGAGCCTCGCCTGAATCAGTTCTCTCCTCCGTT
AATCCTGTAAAGATATCATCGTACGT---TACATTGCCCGTGAATATTGCGTGCCATTGTCGCTTTGTTTG---------
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-------------------CTGCTCATGCGTGGCGTGCGTTGCCTCTGGTGG---TCGACCGGTCGGTCGGGCAAACGTG
GCGC------CGGAGGCAGCGGG-GATGGGCGGCTGATCGCCATGGATCCATGACCATCATGAGGCCGAGTTGCTGCATG
CTTGGTGGGAGAGGCAGGCAGGCAGGGCGTGGTCTGCTCGTCGGTG--------GGCAGCAAAGGGCACGAGCCCACCAA
ACATTCTGGTTCGGTCGCGGGGTCGATGGCGAGATATCGAGTACTTAAACGGGATCGAATTGATTGACTGACTGACTGAC
TGATTGATTGATGTGAGCTGCGTCGGTGCGAGATC----GATCGTGCGCGCCAAGCCTCACGCCGTGACTGAAAAGGCCG
GCCCGGTTGCTTGGTCAGGCATCGGATCGCGGCATGTTTGCCGGCGATCGCAAGGAACATATATCCCGTCGATCGCCCCG
CTGACGTCCGTGTTCT---------------------------------TTACTTGTCCGGGTTCGTGCCCATGCCTCTC
TGTCTGTA--GGCGCTTGACATAGAAATTCTATGACTTTTCCCGGGTGTCACCTGTCATGGGTGCCTGACAAATACCAGT
ATAACAAATTAAGCGGTTCATATGGCTGGGTCAATTAGCATGTGATGCATGCGTCCAACGATTACGCCGAGTGATAAGCT
GATTGACTGGAAGCGCGCGGCCGGCTGCGGTGTTAGTTGCAGGATCATGCATGCAT---GTACCGTACGGTGGGTGGATG
CATGCTGCCTACGGAAACGGGGACCGGGGAGAATACAAAAACCATGCACACCATCGTGCCACATGATCTCCGTCTAATGA
AACGCTTGGTTAAAAAATGG
>chr4D_78
-----------------------------------------------------------------------------ATG
AGATGAAATGAATAGGACAGCAACTCAGCAAGCAAACAAAGTGGCGTCCGGTTCCAGCACGCAG--CGCGTTTCTTCCAA
GGCATCTCAACTCATATATAGTACTACTAGCACTGTATTAGTTTGTAGCGACAGTAGGACCCCTCCCCTCTGATC--CAA
ATCAAATAGGT-------TACCCATAATCAGGCCCATCCCACCA-TGATCCAAATCTCCCGCCACCTCGTTCGTTGGCGC
TTCCCTCGTCCGTTTCTCTGTTCCGCCCGCTGCAGGTAGCGCGGGACG----CAAGCGTCGTGGATGAG--GACGCTAGC
TTTGCCGTTGGTTTCCCGGTCGTAGCTCGCTAGCCTAGCTCCGTTTCCGGGCCTTGCTTGCGTGGACCTGTAGTTGTCTT
GCGGATGCACACCTACGGCTACGGTACGTACCTCTCATCTCATGGAGGTGGACATCACCGCAAGAAAACGCCAG------
-------TGCCCGCTGAATTTTAGTTTTTGGAGACTCGATCGTCCGGA-------ACACATACGCTAGCCTGCATGCGTC
TCACTGTCGTTTCAGCAACCA---------CGCCGTGCGCTGATGGAAACACTGTTCTTTTG------TTTTTCAGTTCG
TCGGGTTCGTGATAATTACTACTGCTGGTA--------GCAATCAGTCGGTTTACCAGACAGTGACATTGACCGCCGAAC
AGCTGGTGCCCTGATACTACTAGTTTTTAGACGATTG-AATCCAGTTACTTGGATCGATATGCGTGTCTCTCTCTCTGCA
GTCTGCACACGCCACTAGAGCGCAACGTGCCCGCAACAAAAGAATTGTGTGACACCAGTGCTGCATCTTCCTG--GCGCG
CTCGGTTTCACTCGCCCACCCGGCTCTTATTAAGCCCGAGCTCTAGTTCCTTTTCTTCCCTTAGCTCTTCCTCGCTAGCC
AAGTAGCCCGGGCAGTCACACTGATTGTGCTCGAGAATCAAGGCATGAAAGCGACGACACCTCGCGGCGGCGGCGTGGAG
ACTGCGAAGCCGAAGAAGAGGAAGAAGGCGGGCGCGGGTGGGTTCATCTTTGGCTGCGGCGGCTCCAGGTCTGTGGCCGT
CGTCGCAGACAATCTCTCCACGATGGCACTGGCCAAGTCGTCGTCGTCGTCG---AGCGCCGGACCAACGGCGGAACCAG
CGCCCGCAGCGAAGCCCAAGGCGCCGGCCTACCACGACGCCGAGGGCGCGCCGAGCGTGGACGCGCTCCTGGGCCAGCTC
CGCGAGCTGGAGCGCGGCGTGCGCGCGCTGGGCGTCCGGGCCCGGGAGGAGGACGGCGTCGCGCAGGCGTGCCGTTGCAG
CGCGAGGCCGCCGCGGCACCGGCA------------AGGTGGGCGCGGTCGGCTGGAGGAGGAGAGCGTGGCGGTGGTGA
CGGAGACGGAGGACCCGCTGGGCGAGTTCCGGCGGTCCATGGCGGAGATGGTGGTGGAGAACGGGATCACGGGCGGCGCG
GAGCTGCGGGAGCTGCTGCAGCGGTTCCTGTCGCTCAACGCGGCGCGCCACCACCACCTCATCCTCCGCGCCTTCGCGGA
CGTCTGGGAGGAGCTCTTCGCCGGCGACCCCACGAAG---A------AGCTGAAGCAGAAGCGTCCTGCTGTCTCCCCTG
CAGGCCATGGCGCCCGGGCGAGCAGCTAGCTGCACGGCACGTACGTACCGCGCACTGACAAGTTAACTACAGTCCGTAAA
CTTCCCCATGCACGCAC--------CCTCGGGAATTGTTGCCGTCCGATCCGATGAAAACATGCGTCGCGTGCGTGGTTT
TCAGTGCCGTGATGAGAAGGAGCGTGCATGTGGCTGTGGCTGGCACCTGAGCCGAGCCTGAATCAGTTCTCTCTTCCGTT
AATCCTGTAAAGATATCATCGTACC----TACATTTCCCGTGAATATTGCGTGCCATTGTCGCTTTGTTTG---------
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-------------------CTGCTCATGCGTGGCGTGCGTTGCCTCTAGTGGCAGTCGACC------------AAACGTG
GCGC------CGGAGGCAGCGGGGGATGGGCGGCTGATCGCCATGGATCCAGGACCATCATGAGGCCGAGTTGCTACATG
CTTGGTGGGAGAGGAAGGCAGACAGGGCGTGGTCTGCTCGTCGGTG--------GGCAGCAAAGGGCACGAGCCCACCAA
ACATTCTGGTTCGGTCGCGGGGTCGATGGCGAGATATCGAGTACTTAAACGGGATCGAATTGATTGAG--------TGAC
TGACTGACTGATGTGAACTGCGTCGGTGCGAGATCGATCGATCGTGCGCGCCAAGCCTCACGCCGTGACTGAAAAGGCCG
GCCGGGTTGCTTGGTCAGGCATCGGATCGCGGCATGTTTGCCGGCGATCGCAAGGAACATATATCCCATCGATCGCCCCT
CTCACG---------------------------TCCGTGCTAGTATTTGTTAGTTGTCGTGGTTCGTACCCATGCCTTCG
TGTCCGTATAGGTGCTTGACATAGAAATTCTATGACTTTTCCCGGGTG----------------CTTGACAAATACT--T
ATAACAAATTAAGCGGTTCATATGGCTGGGTCAATTAGCATGTGATGCATGCGTCCAACGATTACGCCGAATGATGAGCT
GATTGACTGGAAGCGCGCGGCCGGCTGCGGTGTTGGTTGCAGGATCATGCATGCAT------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------S-SSSSSSSSSSS---
-S-----------S------------------------------------------------------------------
-----S-SS-S---------------------------------------------------S--S--------------
-------S---------------------------S-SS-S-SSS------------------------SS--S------
----------SSSS--S-------------------------------SSSS--------------S--SS---------
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----------S------------------S----------------------------------S---------------
------S---S------S--------------------------------------------------------------
------------------------SS-S-SS---------------------S-------S----S-SS------S----
-----------------------------------------S--------S----------------S------------
------------------S-------------------------------------------------------------
S---------------------------------------------------------------S--SS-S-SSS-----
-----------------------------------------S--------------------------------------
-----S--S-S-SS------------------------------------------------------------------
-----------S-------------------------------------------------------S------------
----------------------------------------------------SSS---------S---S-----------
-S--S--------S----------S---------S---------------------------------------------
--------------------------------------S--------------------S--------------------
----S----------------------------------S----------------------------------------
-------------------------------------------------------------------------S------
---------------------------------------S----------------------------------------
---S------------------------------S---------S-----------------------------------
-S----------------------------------SSSSSS------------------S-------------------
-----------------------S---------S------------------------------SS-S--SS-SSSSS-S
S-------------------------------------------------S-S---S-----------------------
--------------S-----------SSS----------------S--------------S---S------SSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS--S----S----S---------------------------------------------SS-
SSS-SSSSSS----S--------S---------------------------S------------------------S---
-------------------------------------------SSSSSSSSSSS--------------------------
-----------------------------S-------------------------------------------------S
----------------S--------------------------------------------S-------------S----
--------------S-----------------------------------------------------------------
------S-----S-SSSSSSSSSSSSSSSSSSS-----------------------------------------------
----------------S-------------S------------------------S--S--------S----------SS
-S--SSS--SS-S-------------------------------------------------------------------
--------------------------------------------------------SSS-----S--S------------
---------------------------------------------------------------------------S----
-------S----S-------
>forward_226
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----------------------------------------------AGCGACAGTAGGACCCTTCT--------------
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>reverse_2162
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-TTCCGAACGGAGGGAGTACT-----------------------------------------------------------
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