>input_sequence_66022
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----------------------ATGGGCCTTCCCTTCAGTGCGTTAAACAAGTTAGGTAAGTTCTCAAGTCTCAGTTCTT
TCTATGGTTTTGTTTTGTTCTATATGCCGGTGCCACATGATATTACATGGTTCTTGTGGTTCCGCGCTGTTTTATTTGTT
GCTTGAGCTTCTGTCCCATATTCTAAATTTGTTAACTCGTGCTGCTGCTCCTCTCAGGAGTGCCAGGATTGGGCGCGGTA
ACTACCGGACAAGTCTATGATCGACATTTTAAGAACAAGGATACCCGCACCTTTGAAGAATTTCATCTTGCATATGTCGA
CTTCTGCAAGTAAGCTA----CCTGTTTGTGCAGTTACATTGCCTGCACTTCTTGTCCC-AAACCTTTTATTCATGTCAT
CATCCGAAAACACTGTAGGTATTTCAACACTGTGTTGCCTGGCCAAGATTTTGATACTCCAGATCTTGAAGATATAAGGG
TAAACCCATCATCCATCAGTTTTTCTTTTCTTTTCGAAGGGATGTGATTCTGTGTAAATATTTAAGGACATCTAGCAATT
GACTGTTACATATCACCGAAAAACTCAACTGAACC--GTACATGCGCATATTGCAGAGATTCCATAAAAAATGGGCAGCG
GCGGACGAGCCCGGAAGGAAGAAGATGTTCACCGAGTATATGCAGGAAAATGTCCACGAGGCCAAAGTTGACGACAGCCT
CTTCATCATGGCCGGCCTGGCTGCGCCAGCAGCGGCCATCATCGCCAAGAAGAGCGGCGAGAGCATCCCGCAGGTCAAGA
AGTTCAAGGTGCATTTAATCCCCAACGTCGTCTTCGTGCCGCTGTGCACCCTGGTTGCCATCATGGGTGCCACTGCAGTT
CAGATGAGCAAGAAGAGCAAAGACAACAACAAGCCTACGAGCTGA-----------------------------------
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>chr6B_1_TraesCS6B01G111600
GAAAACCAAGCCATATTATTTTGCTGGACCGCAATATCTGAAGTGTAATCTTGCTCAGGCACAAGATAGTCGGGTGGAAA
TTAAGGTGAGACCAATTGTGCCCATTTTTTGGCATGGC------------------------CTGCAAGAATGAACATAA
------AATGATCTGACACCGTCATTGAACCGTGACAAGCAGACAATGCAATGCATTTTTTTGACATTCTTCCATGAGCT
CTTCTGAGTTCTGACAACAAATGTCTATGCATATATTGGTAATAGTCTGTC-TTTTGCAGTACAACGACTTGTATCAAAA
CTGGAATCTGGGTAAAGTGCCTGATGGATCTTCTTATTCAAGTGTCTGCAATTGCGTGCTGTTTCTTGGAACTCAGAACA
TAAACAGATGGCCTCTAAAAGACATAAAAGGGAAACAGCAGTAGGAATCTCTCCTTTATGAGCTAAAGCATGGTTATTCA
ATTCGTCTTATGCAAGCAAAAGCATATACATGTGCCAGAAAGCACGTCTAGCATCATCCTTGTAGCTTAGCTCCCTGTTC
TGCTAAAAAGCAATGTTAGAAGTTAGAATGCTCTTAAAATTACACTACCATAATTTAAAGCTTTTGAAGTTTGGCACCTT
ATTAATCTCAACATATAAAATAGTCGGCTTTTATTATACAGCCACACA-------------------TTCTTTCAGCAGT
TGGGCCAAGCCTAAGTCGCCTGGTAAATTATGTTTAGAACATTCTTTAGGAGGCAAGAGAAAATAGACCTTAACCCT--T
ATTGCAGGAACCCAACTAGCAGT----------GGTTTTCCCTCGAATGATTCCTGCAGCTCAAGAGCCAGGCCAACTCT
AACTTCACTCCCAGGGCAGGAATCAACTAGAAAGGGCAGAAAGAGAACTTGTAGGACAAAAAGGGAAGAAAGGAATGCAT
TCCAAGCTTGCATTCCCTTGGTTCTCTCGGACTATATAAACACTCGAGTTCCCTTGATGGGTCTATCCTAAAAATCTCTC
TGTCCTCTTGCTTGCACCAATAATGGGCCTTCCCTTCAGTGCGTTAAACAAGTTAGGTAAGTTCTCAAGTCTCAGTTCTT
TCTATGGTTTTGTTTTGTTCTATATGCCGGTGCCACATGATATTACATGGTTCTTGTGGTTCCGCGCTGTTTTATTTGTT
GCTTGAGCTTCTGTCCCATATTCTAAATTTGTTAACTCGTGCTGCTGCTCCTCTCAGGAGTGCCAGGATTGGGCGCGGTA
ACTACCGGACAAGTCTATGATCGACATTTTAAGAACAAGGATACCCGCACCTTTGAAGAATTTCATCTTGCATATGTCGA
CTTCTGCAAGTAAGCTA----CCTGTTTGTGCAGTTACATTGCCTGCACTTCTTGTCCC-AAACCTTTTATTCATGTCAT
CATCCGAAAACACTGTAGGTATTTCAACACTGTGTTGCCTGGCCAAGATTTTGATACTCCAGATCTTGAAGATATAAGGG
TAAACCCATCATCCATCAGTTTTTCTTTTCTTTTCGAAGGGATGTGATTCTGTGTAAATATTTAAGGACATCTAGCAATT
GACTGTTACATATCACCGAAAAACTCAACTGAACC--GTACATGCGCATATTGCAGAGATTCCATAAAAAATGGGCAGCG
GCGGACGAGCCCGGAAGGAAGAAGATGTTCACCGAGTATATGCAGGAAAATGTCCACGAGGCCAAAGTTGACGACAGCCT
CTTCATCATGGCCGGCCTGGCTGCGCCAGCAGCGGCCATCATCGCCAAGAAGAGCGGCGAGAGCATCCCGCAGGTCAAGA
AGTTCAAGGTGCATTTAATCCCCAACGTCGTCTTCGTGCCGCTGTGCACCCTGGTTGCCATCATGGGTGCCACTGCAGTT
CAGATGAGCAAGAAGAGCAAAGACAACAACAAGCCTACGAGCTGATCCCGTCTTGTTCCTGTCTGCGGTTTAAATAAGAT
GACGTAATAAACAAGAAACCTGGAACGCATATTATCATCCAAATGATTGTATAAAATTAAACCAAGATGCAAGTCATGGG
TTAAATATATATGTTCCTTTTGTTGTTCAAATGGCCGATGGAAAGAAAGCAAAGTTTGAAAAAATATCAAGTTTGTCACA
GTTTGCTATTTTGTTTTCTTCCATATGTGATATGCCCATTTTCTCGCACTTTCTTTGGTGTTCTTTGAACATCAACAGAA
ATGTGATAATGTTCGGTACCTGTTGTAAATTTGGTCAGAGTGCACAAATTTTTTGTTCAATCAAAACTCTGTATTATCCC
TCGCTTGCAAGACACTGCACTTGCATGTAAATCTAGATTCCCGACTGCTGCAAGAAACCTACATTCTAAGCTTGCAAAAC
ACTGCACTTGTATCGTATGACCGCTACAAGAAAGCTAATTTTAAGTGTGGTGCAAATCAAGCATGGAATCAACAAG---A
TGTTGCTTAAGAAAGAACATTCACCGTGAAAACATAGCATACAGGCAGCTGAAATGCAAACTGAGGAGAAGTAATTTC-T
CACAAGAACTTTCACAGCATGATACTTTTATCTTACACAAGGGCCTAAAAAATTCCAAGAGAACAATCAGTACCACCACG
TTCATATCTCAATGAGAGCACAAACCACCAGAACATCAATGCCTCTGAATTAAGCTAGCACAAGTGTTAAGCTCACGATC
TGGATAGCACACTTTTACCTCACAGAGCCTATTCTCTCTGGCAAAATATATCAT-ATTACAATCAAATTTCGATGAGAAC
ACAGAGAGGAACATCTGTTACGGCCTCGAGTTTGCAACCCTAGGAGCTCAGGATAAGTTGGTTGTTAGTTATCCTTGCAA
TAGAACAGTCACTGAGCTGTTGTTACTTTCCCCTGAAAAGCAAACATGAATAGCAAATACTAGGTAAGTATACACCAAAT
AAAGCAAAAA
>chr6A_1
GAAAACCAAGTGTTATT-TTTTGCTGGATCACAATATTTGAAGTGTAATCTTGCTGAGGCACAAGATCATCGGGTGAAAA
TTAAGGTGAGCCCAGTCGTGTCCATGTTTTTGCATGGCCTAGGTCACCTAAGGTTTATAACTCTGCAAGAATGAACATAA
------AATGATATGATACCGTCATTGAACAGTGACAAGCAGGCGATGCAATGCA--TTTTTGACATTCTTCCATGAGCT
CTTCTGAGTTCTGACAGAAAATGTCTATGTATATATTGGTAATAGTCTGTTTTTTTGCAGTACAACGACTTGTATCAAAA
CTGAAATTTAC-TAAAGTGCCCGATCCATCTTCTAATTCAAGTGTCTACAGCTGTGTGCTGTTTCTTGGAACTCAGAACA
TAAACAGATGGTCTCTAAAAGACATAAAAGGGAAACAGCAGTAGGAATCTCTCCTTTATGAGCTAAAGCATGGTTATTCA
ATTCGTCTTATGCAAGCAAAAGCATATACATGTGCCGGAAAGCACGTCTAGCATCATCCTTCTAGCTCAGCTCCATTTTC
TGCTAAGAAGCAATGTTAGAAGTTAGAATGGTCTAAAAACTACACTACCATAACTTG-AGCTTTTGAAGTTTGGCACCTC
ATTAACCTCAATGTATAGAAGAGTTGGCTCTTATTTCGCAGCCACACA-------------------TTCTTTCAGTGGT
CGGGAG--GCCTAAGTTACCTGGTAAATTATGTGCAGAACATTCTTTAGGTGGTAAGAGAAACTAGACCTTGACCCT--T
ATTGCAGAAACCCAACTAGCAACTGAGTTTGTAGGTTTTCCCTCGAATAATTCCTGCAGCTCAAGAACCAGGCCAGCTCT
AACTTCACTCCCAGGGCAGGAATCAACCAGAAAGGGCAGAAAGAGAACTTGTAGGACAAAAAGGGAAGAAAGGAATGCAT
TCCAAGCTTGCATTCCCTTAGTTCTCTGCGACTATATAAACACTCGAGTTCCCTTGATGGGTCTATCCTAAAAA--TCTC
TGTCCTCTTGCCTGCACCAATAATGGGTCTTCCCTTCAGTGCGTTAAACAAATTAGGTAAGTTCTCAAGTCTCAGTTCTT
TCTATGGTTTTGTTTTGTTCTATATGCCGGTGCCA-------TTACATGGTTCTTGTGGCTCCGCACTGTTTTATCTGTT
GCTGGAACTTCTGCTCCATATTCTAAATTTGTTAGCTTGTGCTGTCGTTCTTCTCAGGAGTGCCAGGGTTGGGCGCAATA
ACAACCGGACAAGTTTATGATCGACATTTTAAGGACAGGGACACGGGCACCTTTAAAGACTTTCATCTTGCATATGTCGA
ATTCTGCAAGTAAGCTTCCTTCCTGTTTGTGCAGTTATGTTGCTTGCACTTCTTGTGCCCAA-CCTTTTATGCCTGTCTT
CATCTGAAAATGCTTTAGGTATTTCAACACTGTGTTGCCTGGCCAAGATTTTGATACTCCGGACCGTGGTGATCTAGAGG
TAAACCC--------------------------------------GATTCGGTGTAAATATTTATGGACATCTGGCAATT
GACTGTTACATATGGTCCAAAAACTCAACTGAACATGGTACATGCGCATATTGCAGGCATTCCATAAAAAATGGGCAGTG
GCGGACGAGCCCGGAAGGAGGAAGATGTTCATCGAGTATATGCAGGAAAACGTCCACGAGGCCAAAGTTGACGACAGCCT
CTTCATCATGGCCGGCCTGGCTGCGCCAGCGGCAGCCATCATCGCCAAGAAGAGCGGCGAGAGCATCCCGCAGGTCAAGA
AGTTCAAGGTGCATCTAATCCCCAACGTCATCTTTGTGCCGGTGTGCACGCTGGTTGCCATCATGGGTGCCACTGCAGTT
CAGATGAGCAAGAAGAGCAAAGACAACAACAAGCCTACGAGCTGATCCCGTCTTGTTCCTGTCTGCAGTTTAAATAAGAT
GATGTAATAAACAAGAAACCTGGAA-GCATATTATCATCCAAATGATTGTATAAAATTATACTAATATGCAAGTCATGGG
TTAAATATACATGTTCCTTTTGTTGTTCAAATAGCCAATGGAAAGAAAGCAAAGTTTGAAAAAATATCAAGTTTGTCACA
GTTTGCTACCTTGTTTTCTTCCATATGTGATATGCCCATTTTCTCACACTTTCTTTGGTGTTCTTTGAACATCAACAGAA
ATGTGATAATGTTCGGTACCTGTTGTAAATTTGGTCAGAGTGCACAAATTTCTTGTTCAATCAAAACTCTGTATTATCCC
TCGCTTGCAAGACACTGCACTTGCATGTAAACCTAGATTCCTGACTGCTGCAAGAAACCTACATTCTAAGCTTGCAAAAC
ACTGCACTT-----GTATGACCGCTACAAGAAAGCTAATTTTAAGTGCGATGCAAATCAAGCACGGAATCAAACAAAACA
TGTTGCTTAAGAAAGAAATATCACCGTGAAAACATAGCATACAGGCAGCTGAAATGCAAACCGAGGAGAAGTAATTTCGT
GACAAGAACTTTCACAGAATGATACTTTTATCTTACACAGGGGCCTAAAAAATTCCAAAAGAACAATCAG-ACCACCACG
TTAATATTTCAATGAGAGCACAAACCACCAGAACATCAATGCCTCTGAATTAAGCTAGTACAAGTGCTAAGCTCATGATC
TGGATAACACACTTTTACCTCACAGAGCCTATTCTCTCTGGCAAAACATATTCT-ATTTCAATCAAATTTAGACGAGAAC
ACAGAGAGGAATGTCTGTTACGGCCCCAAGTTTGCAATCCTAGGAGCTCAGGATACGTAGGTTGTTAGTTATCCTTGCAA
TAGAACAGTCACTGGGCTGTTGTTACTTTCCCCTGAAAAGCAAACATGAATAGCAAATACTAGGTAAGTATACGCCAAAT
AAAGCAAAAA
>chrUn_3
--AAACCAAGCGATATT-TTTTGCTGGACCACAATATCTGAAGTGTAATCTTGCTGAGGCACAAGATTATCGGGCGGAAA
TTAAGGTGAGCCCAATTGTGCCCATTTTTTGGCATGGC------------------------CTGCAAGAATGAACATGA
GAGTGTAATGATATGATACTGTCATTCAACCGTGACAAGCAGACATTGCAATGC-TTTTTTTGACATTCTTCCATGAGAT
ATTGTGAGTTCTGACAGCAAATGTCTATGTATATACTGGTAATAGTCTGC-TTTTTGTAGTACAACAACTTGTATCAAAG
CTGGAATCTACATGAAGTGCCCTATCCACCT---AATTCAAGTGTCTACAATTGCGTGCGGTTTCTTGGAACTCGAAACA
TAAACAGATGGCCTCTAAAAGACATAAAAGGGAAACAGCAGTAGGAATCTTTCCTTTATGAGCTAAAGCATGGTTATTCA
ATTCGTCTTATGCAAGCAAAAGCATATACATGTGCGAGAAAGCACGTCTAGCATCATCCTTGTAGCTTAGCTCCCTGTTC
TGCAAAAAAGCAATGTTAGAAGTTAGAATGCTCTAAATATTACACTACCATAACTTG-AGCTTTTGAAGTTTGGCACCTC
ATTAACCTCAATGTATAGAAGAGTTGGCTCTTATTTCGCAGCCACACAATTGGAACCTTTCACCATATTCTTTCAGCAGT
TAGGCAGTGCCTAACTCACCTGGTAAATTATGTGCAGAACATTCTTTAGGAGGCAAGAGAAACTAGACCTTAACCCTTAT
ATTGCAGAAACCCAACTAGCAACCGAGTCGGTAGGTTTTCCCTCGAATAATCCCTGCAGCTCAAGAACCAGGCCAGCTCT
AACTTCACTCCCAGGGCAGGAATCAACCAGAAAGGGCAGAAAGAGAACTTGTAGGACAAAAAGGGAAGAAAGGAATGCAT
TCCAAGCTTGCATTCCCTTAGTTCTCTGGGACTATATAAACACTCGAGTTCCCTTGATGGGTCTATCCTAAAAA--TCTC
TGTCCTCTTACCTGCACCAATAATGGGTCTTCCCTTCAGTGCGTTAAACAAGTTAGGTAAGTTCTCAAGTCCCAGTTCTT
TCTATGGTTTTGTTTTGTTCTATATGCCGGTGCCA-------TTACATGGTTCTTGTGGCTCCGCACTGTTTTATCTGTT
GCTGGAACTTCTGCTCCATATTCTAAATTTGTTAACTTGTGCTGTCGTTCTTCTCAGGAGTGCCAGGGTTGGGCGCAGTA
ACAACCGGACAAGTTTATGATCGACATTTTAAGGACAGGGACACGGGCACCTTTAAAGACTTTCATCTTGCATATGTCGA
ATTCTGCAAGTAAGCTT----CCTGTTTGTGCAGTTATGTTGCCTGCACTTCTTGTGCC-AA-CCTTTTATGCGTGTCAT
CATCTGAAAACGCTGCAGGTATTTCAACACTGTGTTGCCTGGCCAAGATTTTGATACTCCGGACCGTGGGGAACTAGAGG
TAAACCC--------------------------------------GATTCGGTGTAAATATTTATGGACATCTGGCAATT
GACTGTTACATATGGTCCAAAAACTCAACTGAACATGGTGCACGCGCATATTGCAGGCATTCCATAAAAAATGGGCAGTG
GCGGACGAGCCTGGAAGGAAGAAGATGTTCATCGAGTATATGCAGGAAAACGTCCACGAGGCCAAAGTTGACGACAGCCT
CTTCATCATGGCCGGCCTGGCTGCGCCAGCGGCGGCCATCATCGCCAAGAAGAGCGGCGAGAGCATCCCGCAGGTCAAGA
AGTTCAAGGTGCATCTAATCCCCAACGTCATCTTTGTGCCGGTGTGCACGCTGGTTGCCATCATGGGTGCCACTGCAGTT
CAGATGAGCAAGAAGAGCAAAGACAACAACAAGCCTACGAGTTGATCCCGTCTTGTTCCTGTCTGCAGTTTAAATAAGAT
GATGTAATAAACAAGAAACCTGGAACGCATATTATCACCCAAATGATTGTATAAAATTATACTAAGATGCAAGTCATGGG
TTAAATATATATGTTACTTTTGTTGTTCAAATAGCCGATGGAAAGAAAGCAAAGTTTGAAAAAATATCAAGTTTGTCACA
GTTTGCTATTTTGTTTTCTTCCATATGTGATACGCCCATTTTCTCACACTTTCTTTGGTGTTCTTTGAACATCAACAGAA
ATGTGATAATGTTCGGTACCTGTTGTAAATTTGGTCCAAGTGCACAAATTTCTTGTTCAATCAAAAGTCTGTATTATCCC
TCGCTTGCAAGACATTGCACTTGCAAGTAAACCTAGATTCCTGACTGCTGCAAGAAACCTACATTCTAAGCTTGCAAAAC
ACTGCACTT-----TTAAGACCGCTACAAGAAAGCTAATTTTAAGTGTGGTGCAAATCAAGCATGGAATCAACAAG---A
TGTTGCTTACGAAAGAACATTCACCATGAAAACATAGCATAAAGGCAGCTGAAATGCAAACTGAGGAGAAGTAACTTCGT
CACAAGAACTTTCACAGAATGATACTTTTATCTTACACAAGGGCCTAAAAAATTCCAAGAGAACAATCAGTACCACCACG
TTCATATTTCAATGAGAGCACAAACCACCAGAACATCGATGCCTCTGAATTAAGCTAGCACAAGTGCTAAGCTCATGATC
TGGATAACACACTTTTACCTCACAGAGCCTGTTCTCTCTGGCAAAATATATCATAATTACAATCAAATTTAGATGAGAAC
ACAGAGAGGAACATCTACTACGGCCTCAAGTTTGCAACCCTAGGAGCTCAGGATATGTTGGTTGTTAGTTATCCTTGCAA
TAGAACAGTCACTGAGCTGTTGTTACTTCCCCCTGAAAAACGAACATGAATAGCAAATACTAGGCAAGTATACGCCAAAT
AAAGCAAAAA
>SNPs
-----------S-----S------------S------------------------S-----------SS-----------
----------S---------------------------------------------------------------------
------------S---S---------------------------------------------------------------
----------------S------------S--------------------S-----------------------------
---------SSS---------S---SS-------S------------S--------------------------------
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----------------------------------S------------------S--SS---------------------S
-----S-----SS----S--S---S----S-----SSS------------------------------------------
-----SSS---------S---------------SS---------------------------S-----------------
-------S-------------SS-------------------------S-----------------S--------S----
---------------------------S----------------------------------------------------
-------------------S-------S----------------------------------------------SS----
-----------S---------------S----------------------------------------------------
-----------------------------------SSSSSSS-----------------S-----S---------S----
---S--S------SS----------------------S------SS-S--S----------------S--------S---
--S-----------S------------------S---S---S--SS--------S----S--------------------
S---------------S--------------------SS-----------------S-----S--------S-S------
----S------S------------------------------------------------S--S-S--SS---S--SS--
-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S-------------S--------S------
-------------SSS-S----------------S---------------------SS--------------------S-
-------------------------------S------------------S-----------------------------
------------------------------S-------------------------------------------------
--------------S--------------S----S------S-------S------------------------------
------------------------------------------------------------------S-------------
--S--------------------------------------------------------S--S-----------------
--------------------------------S-----------------------------------------------
---------------------------------------------S----------------------------------
---------------------------------------------------S----------------------------
-------------------------------S---------S--------------------------------------
---------SSSSS------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------S--------------------------------------------------------------
-------S----------------------------------------------------------S--------S----
------S---------------------------------------------------------------S---------
---------------------------S---------------------------S------------------------
-------------------------------------------------------------------------S------
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>forward_822
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--TGCAGGAACCCAACTAGCAG----------------------------------------------------------
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>reverse_2352
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-------------------------------TCTAGATTCCCGACTGCTGC-----------------------------
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