>input_sequence_65959
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---------------------------GTAACACATCCATCCATTTCTAGCTGCAGGCAGAGCAGAGTTGAGCGTGTGGG
AGTCGAAGGAGATCGAGATGGCAACTGCATATGCTCCTCCGATGGCGAGCCAGGTGATGAAGAGCGGCTTGGTGAGCTCC
AAGCCGCGGGGGCTGTCCGGCGCCTCACTCACCAGGAGGCCCCGCTTCGTCGTCAAGGCCGTCAAGTCTGACAAGGTCAG
TTGCAATTGCATGGAAGAGAGAGCTAAAATTAAGCGATTCACCACACT-----------------------------TGT
ATCTCATACATATTCTTGTGTCTCCTCTCTCTCCTACAAACAGGGGACGTACCAGGTGGTCCAGCCCATCAACGGCGACC
CGTTCATCGGCAGCCTGGAGACGCCCGTCACCTCCAGCCCCCTCGTCGCGTGGTACCTCTCCAACCTCCCCGCGTACCGC
ACCGCCGTCAGCCCGCTCCTCCGCGGCATCGAGGTCGGCCTCGCCCACGGCTATCTCCTCGTCGGCCCCTTCGCGCTCAC
CGGCCCGCTCCGCAACACGCCAATTCACGGCCAGGCGGGAACCCTCGGCGCCATCGGCCTCGTCTCCATCCTCAGCGTCT
GCCTCACCATGTACGGCGTCGCCTCCTTCAACGAGGGCGCGCCCTCCACCGCGCCCGCGCTCACGCTCACCGGCCGCAAG
AAGGAGGCCGACAAGCTGCAGACTGCGGAAGGCTGGTCGCAGTTCACCGGAGGCTTCTTCTTCGGCGGTGTCTCGGGCGC
CATCTGGGCCTACTTCCTCCTCTACGTGCTCGACCTCCCATACTTCTTCAAGTAGATG------ATTATTGTTTGGCATG
TACGATGGG--------TGCAGATGATGT----GATCTCTTCT---TGATGGTTGCTTGAAAGAGTCTATGTATAAATGA
ATTTACGTATTCCTC-----------------------------------------------------------------
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>chr3A_1_TraesCS3A01G052700
CGTCAAGTTTAAAGTTCATATGTTGTTTTATATGGGAGAAACAAAAAAGACAAAAATAATTGAACGAATCGTGATGCAAA
AAAGAGTGGCTAGATAAGGGAGTGTCCTGAAATCTATGCTCTTCAACATGTTTACCCTGTTAGTATGAGTGTGGGCCTTC
CAATAGAGGGATGCACCAGCGAAGGACACCTTTGCCTTTGACCCCAGTGCTGTAGTCATGTCCACCGCAGCGGCCGGAAA
CCGTCATTGAGGAACGCGCGGAGGCTAGTGTATTGATCGGTGAAAATAAAATTTTCATTTACATATCTTCCTCATTTTCG
CCTAATTAAGCCTCTAAAGGAAGAAGCTATATTATTAGCATTTTTTTCATTTTACCATACCTACAGATTTTTGGCTCACC
AGCTGCCTATAGATGTGCAGAGCTAATATAAGCGTGAAGATGTCATCTCGGGATGAAAATTCTGGTGTCTTTGTATATGT
GCAATCCATTTGAACTCCACAGTAGTGTATAATACTTCCTCCATTTAATATATAAGTCTTTTTAGAGATTTTAATACGGA
CTACATACGAAAGTATGTAGACATATTTTAGAGTATAAGTTCACTCACTTTGCTCCGTATATAGTCCATATCGAAATCTA
GGTATATAGTCCGTATACTTTTATTTGATGGCTCCATAATTTGCTTGTAA-AAAGGCAGCACATGTCTCTGTGTTTTACA
TATTTCA--TTTTATATGTATTGTATCAGTCTGCACTCTGCACTACAAAATCTAAATAGAGGAAAAATCTACAGCCATAG
ACAAATAGAGAGT----------------------------------------------------------------TAG
AGACCACACACACAGTGACACGCAGACAGAATCTGAAAATTCGGATAAGAGATAGGATTACAGCCAATGGAAGCCACACA
GCTGCGGACCATATCTCGTGTGCAGGGGCCCGCCCAACAAGAGCCAGATTCTCTCCTCTCACTTGGAGCCACTAAAACAT
ATTGCCGTCCGGACAATTCTTCTTCCTGTAACACATCCATCCATTTCTAGCTGCAGGCAGAGCAGAGTTGAGCGTGTGGG
AGTCGAAGGAGATCGAGATGGCAACTGCATATGCTCCTCCGATGGCGAGCCAGGTGATGAAGAGCGGCTTGGTGAGCTCC
AAGCCGCGGGGGCTGTCCGGCGCCTCACTCACCAGGAGGCCCCGCTTCGTCGTCAAGGCCGTCAAGTCTGACAAGGTCAG
TTGCAATTGCATGGAAGAGAGAGCTAAAATTAAGCGATTCACCACACT-----------------------------TGT
ATCTCATACATATTCTTGTGTCTCCTCTCTCTCCTACAAACAGGGGACGTACCAGGTGGTCCAGCCCATCAACGGCGACC
CGTTCATCGGCAGCCTGGAGACGCCCGTCACCTCCAGCCCCCTCGTCGCGTGGTACCTCTCCAACCTCCCCGCGTACCGC
ACCGCCGTCAGCCCGCTCCTCCGCGGCATCGAGGTCGGCCTCGCCCACGGCTATCTCCTCGTCGGCCCCTTCGCGCTCAC
CGGCCCGCTCCGCAACACGCCAATTCACGGCCAGGCGGGAACCCTCGGCGCCATCGGCCTCGTCTCCATCCTCAGCGTCT
GCCTCACCATGTACGGCGTCGCCTCCTTCAACGAGGGCGCGCCCTCCACCGCGCCCGCGCTCACGCTCACCGGCCGCAAG
AAGGAGGCCGACAAGCTGCAGACTGCGGAAGGCTGGTCGCAGTTCACCGGAGGCTTCTTCTTCGGCGGTGTCTCGGGCGC
CATCTGGGCCTACTTCCTCCTCTACGTGCTCGACCTCCCATACTTCTTCAAGTAGATG------ATTATTGTTTGGCATG
TACGATGGG--------TGCAGATGATGT----GATCTCTTCT---TGATGGTTGCTTGAAAGAGTCTATGTATAAATGA
ATTTACGTATTCCTCAGAACCTTTGCATGGATGG-------------------------GAATGTTTAATTTCTATAATG
GTGCGTGCATAAACAAAACCCAATCAGAAACATCTTAGGACCGTGCTAACTTCCGACACTGATCGAAAGATAGGCAACAT
ATGCGAACGCCTACTTCTTTCTCTAATCACACATGCATGCAAGGCTTAAGAGCTAATCGGTGTGTGGTTGCCGAAGA-GG
AAGCATGCAACTAGCCTTGACTTATGATTCCATACGTGCATGCAAACTAAAAGACAAAACAGATAATATCAGCAAAAGAT
T-TTTCTATTTTGAAACTTTAGAATTTTTTGTGGCTCAAACTTTTGCTCCGATTGAAAAACCGTTTTCACGTAAAAAATC
ATCGTGACGAGAGCTTTGAAAATAGATC--ATGTTGGTATGTTTCGATGACTTTTTTTAAATC--AAAAGTTACCACGTT
GGACTACGAGCATGCTTGGATACGTTTTAGTCCCATGACTAAAAGTAGTGGGACTAAAACTTGCTAGTCTCACCCATGCT
TGGATCCAAGTACTAAAGAGACTAAAATCTAGTTATTGAGCATTTATTATCCTCCAAACCCTCCAATCCAGAACTAAGGA
GAGGAATTAAATAAGGAGAGAGAGAGCTAATACATATTTTAGTAGGTTTCCCATGACTAAAAGATTTTAGCCTCAAGACT
AGTTCTAGCCTCTCTTTAGTCAGGGGTGCTTGGAACTTTAGCCTCTAAAAGAGACTATTTTTAGTCAGACTAAAAATAGT
CCCTTGTATCCAAGCACCCTCTACGTAAGTTATCACGCTTGCAATACATAACTTATCATGGTGTTTACACTGAACTTATT
AGGGGTATGTTTCAACTACTTTTTTGCCTGGGTAAAAAATTACCATGACATTTGTATGTTAACTATCAGTTCTGCAATAC
CACATTCTAGCACCGATGTCGTGCCCAGGCCGCAAGGTGAGGTCCATGTGCACACGCGGTAAAGGCTTGCTTATGAAACA
TCACTT
>chr3B_415
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--------------GTGCAGAGCTAATGTTAGCGTGAA-ATGTCATCTCGGGATGAAAATTCTGGTGTCTTTGTATATGT
GCAATCTATTTCATTCCACAGTTGTTGTATAATACTTTGTATGAGAAGACCTTCGTACTTTCATGTTTTTTTACCTGC--
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--------------ATACTTTTATTCAATGACTCCATAATTTGCTTGTAAGAAAGGTACCACATGTTTGTGTGTTTTACA
TATTTTCTTTTATATATGTCTTGTATCAG-------TCTGCACTACAAAATCTAAATATCAGAATATTTCAGTTACAATA
TTATGTTGCTATTCGGCTATATTAACAAATTAGCAGAAAAGGAGCAGAAAACTGGTTTGGGTACAGCCATAGACAAGTAG
AGACCACACACAGAGTGACACGGAGACAGAATCCGAGAATTCGGATAAGGGATAGGATTGCAGCCAATGAAAGCCACACA
GCTCCGGACCATATCTCGTATGCAGGGGCCCGCCCAACAAGAGCCAGATTCCCCCCTCTCCCTTGGAGCCACTAAAACAT
CTTGCCATCCTGACAAATCTTCTTGCTGTAACACATCCATCCATTTGTAGCTGCAGGCAGAGCAGAGTTGTGCGTGTGGG
AGTTGAAGGAGATCGAGATGGCCACAGCATATGCTCCTCCGATGGCGAGCCAGGTGATGAAGAGCGGCTTGGTGTGCTCC
AAGCCGCGGGGCATGTCCGGCGCTTCGCTCACCAGGAGGCCCCGCCTCGTCGTCAAGGCCGTCAAGTCTGACAAGGTCCG
TTGCAATTGCA----AGAGATAGACAAAATTAAGCGATTCAGCACACTTTTCCTTTGTTC-------CAAGTCTTCGTGT
ATCTCATACATATTCTTGTGTCTCCTGTCTCTTCTACAAACAGCCGACGTACCAGGTGGTCCAGCCCATCAACGGCGACC
CATTCATCGGCAGCCTGGAGACGCCCGTCACCTCCAGCCCCCTCGTCGCCTGGTACCTCTCCAACCTCCCCGCCTACCGC
ACCGCCGTCAGCCCGCTCCTCCGCGGCATCGAAGTCGGCCTCGCCCACGGCTACCTCCTCGTCGGCCCCTTCGCGCTCAC
CGGCCCGCTCCGCAACACGCCAATTCACGGCCAGGCAGGCACTCTCGGCGCCATCGGCCTCGTCTCCATCCTTAGCGTCT
GCCTCACCATGTACGGTGTCGCGTCCTTCAACGAGGGCGCACCGTCAACCGCGCCCGCACTCACGCTCACAGGCCGCAAG
AAGGAGGCCGACAAGCTGCAGACCGCTGAAGGGTGGTCGCAGTTCACCGGAGGCTTCTTCTTCGGTGGTGTCTCCGGTGC
CACCTGGGCCTACTTCCTCCTCTACGTGCTCGACCTCCCATACTTCTTCAAGTAGATTA-----ATTATCGGCATGCATG
TACGATGGGTGCA--------GATCATGT----GATCTCTTCTCGATGGCGGTTGCTTCAAAGAGTCCATGTATAAATGA
ATTTACACATTCCTCACAATCTTTGCATGGAT------------------------------------------------
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>chr3D_802
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--------------------------------------------------------------------ATAGACAAGTAG
AGACCACACACAGAGTGACACGCAGACAGAATCCGAAAATTCGGATAAGGGATAGGATTGCAGCCAATGAAAGCCACACA
GCTCCGGACCATATCTCGTATGCAGGGGCCCGCCCAACAAGAGGCAGATTCTCCCCTCTGCCTTGGAGCCACTAAAACAT
ATTGCCATCCGGACAAATCTTCTTCCTGTAACACATCCATCCATTTCTAGCTGCAGGCAGAGCAGAGTTGAGCGTGTGGG
AGTCGAAGGAGATCGAGATGGCTACTGCATATGCTCCTCCGATGGCAAGCCAGGTGATGAAGAGCGGCTTGGTGTGCTCC
AAGCCGAGGGGACTGTCCGGCGCTTCACTCACCAGGAGGCCCCGCTTCGTCGTCAAGGCCGTCAAGTCCGACAAGGTCAG
TTGCAATTGCATGCAAGAGAGAGCTAAAATTAAGCGATTCACCACACTTTTCCTTTGTTCTAACTTGCAAGTCTTCCTGT
ATCTCATACATATTCTTGTGTC---------------AAACAGGGGACGTACCAGGTGGTCCAGCCCATCAACGGCGACC
CATTCATCGGCAGCCTGGAGACGCCCGTCACGTCCAGCCCCCTCGTCGCGTGGTACCTCTCCAACCTTCCCGCGTACCGC
ACCGCCGTCAGCCCGCTCCTCCGTGGCATCGAGGTCGGCCTCGCCCACGGCTACCTCCTCGTCGGCCCCTTCGCGCTCAC
CGGCCCGCTCCGCAACACGCCAATTCACGGCCAGGCGGGAACCCTCGGCGCCATCGGCCTCGTCTCCATCCTCAGCGTCT
GCCTCACCATGTACGGCGTCGCCTCCTTCAACGAGGGCGCGCCCTCCACCGCGCCCGCCCTCACGCTCACCGGCCGCAAG
AAGGAGGCCGACAAGCTGCAGACCGCCGAAGGCTGGTCCCAGTTCACCGGAGGCTTCTTCTTCGGCGGCGTCTCCGGCGC
CATCTGGGCCTACTTCCTCCTCTACGTGCTCGACCTCCCATACTTCTTCAAGTAGATTAT--TTATTATTGGCATGCATG
TACGATGGGTGCACAACTGCAGATGATGTGATCGATCTCTTCT---TGGTGGTTGGTTGAAAGAGTCTATGTATAAATGA
ACTTACGTATTCCTCACAATCTTTGCATGGATCGATGATACTACGATACTATAACATGCGAATTGTTAATTTCTTAAACA
ATGCGTGCATAAACAAAACCCAATCAGAAACATCTTAGGACCGTGCTAACTTCCG--ACTGATCGAAAGATAGGCAACAT
ATTTGAACGCCTACTTCTTTCTCTAATCACACATACATGCAAGC------------TCAGTGTGATGTGGCCGAGGAGGG
ACGCATGCAACTAGTCTTGACTTATGATTTCATACATGCATGCAAATTAAAAAACAAAGTAGATGATGTTAGCAACAAAC
TCTTCCTATTTTGAAACCGTAAAATGTTTTGTCGCTCAAACTGTCACTTCAATGGAAAAACCGTTTTCACATAAAAAATT
GTTGCGGC-AGAGCTTCGAAAATAGATCCCATGTTCGTATGTTTCGACGACTTTTTTCCAGATCAAAATGTTACCTCGTT
GGA-----------------------------------------------------------------------------
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--------------------CTACGTAAGTTATTACGCCTGCAGTATGTAACTTGTCATGATGTTTAGACTGAAGTTGCG
AGGGGTAT-TTTCCACTATTTTTATGCCTGGGTAAAAAGTTACCATGATATTTGTATGTTAACTATCAGTTCTGCAATAT
CACATTCTAGCATCGGTGCCGTGTCTGGGCCGCAGGTA-AGGTCCATGTGTACACACGGCTAAGGCTTGCTTATGAAACA
TTACTT
>chr3B_1303
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--------------------------------------AACAGGCCACGTACCAGGTGGTCCAGCCCATCAACGGTGACC
CGTTCATCGGCAGCCTTGAGACCCCCGTCACCTCCAGCCCCCTCGTCGCGTGGTACCTCTCCAACCTCCCCGCGTACCGC
ACTGCCATCAGTCCGCTCCTCCGTGGCATCGAGGTCGGCCTGGCCCACGGCTACCTCCTCGTCGGCCCCTTTGCGCTCAC
CGGCCCGCTCCGCAACACGCCGATTCACGGCCAAGCAGGCACTCTCGGCGCCATCATCCTCGTCTCCATCCTCAGCGTCT
GGCTCACCATGTACGGCGTCGTGTCCTTCAACGAGGGCGTGCCCTCCACCGCGCCCACCCTCACGCTCACCGGCCGCAAG
AAGGAGGCCGACAAGCTGCAGACGGCAGAAGGGTGGTCCCAGTTCACCGGAGGCTTCTTCTTTGGCGGTGTCTCCGGCGC
CATCTGGGCCTACTTCCTCCTCTACGTGCTTGACCTCCCATACTTCTTCAAGTAGGTTATATTTATTATTGGCATGCATG
TACGATGGGTGCACAACTGCAGATGATGT----GATCTCTTCT---TGGTGGTTGCTTGAAAGAGTCTATGTATAAATGA
ACTTACGTATTCCTCACAATCTTTGCATGGA-------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS-------------S-S--------S-----------------------------------------
------S----S-SSS-SSSSS-SS------------SS-SSSSSS-SSSSS-SSSS----SSS-SSS-----SSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS-----------SS---S-------------------------S-S-------S-S-----------
-----SS----S-------S---------SSSSSSS----------------------SSS---S-S-SS-SSSS--SSS
SS-SS-S-SS-S--------------------------------------------------------------------
------------S--------------------S---------------S---------S---------S----------
---S---------------S---------------------------------S------S-------------------
------S---------S---------------------------------------------------------------
----------------------S---------------------------------------------------S-----
-----------S-----------S--------------------------------------------------------
-------------S------------------------------------------------------------------
--------------------------S-----S-----------------------------------------------
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-----------------------------------------------------S--------------------------
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----------------------------------------------------------S---------------------
-----------------------S--S-----------------------------------------------S-----
---------------------------------------------------------S-------------SSSS-----
------------------------------------------------S-------------------------------
----------------S--S------------S------------------------------SS---------SS--SS
S------------------------------------------------------SS-----------------------
--SS------------------------------S--------SSSSSSSSSSSSS--S-----SS--S-----S-----
-S------------S--------------S-----S----------S-----S-----SS----S--S-S-----S-S-S
----S------------SS--S---S------S---------S-SS--S-S--S----------------S--------S
S-S-S-S-S-------S------------------S-----------S---------SS-SSS-----S------S----
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS-------------S----S----S--SS------S-----S------S------S--SSS
--------S----S----S----S--------------S---------S------------------------------S
------------S--S--S----S-SS-------S-SSS-----------S----S---SS-------------------
-S----
>forward_412
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------------------------------------------------------------------------GGCTCACC
AGCTGCCTATAG--------------------------------------------------------------------
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>reverse_2212
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---------------------------------------------------GCTAATCGGTGTGTGGTTGC---------
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