>input_sequence_65948
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-------------------------------ATGGCGTGGTGGTGCGAGAGGGTCGTCGCGCCGGTGCGGCGGGCCTGGC
TCGCCGTGGCGCGGCGGGCGCGGAACCGCAGTAAGTGCAGCTACC-TAGCGCCCAGCAAATCAACCTCCATCGTTTCTGC
AACGAG---------------------------TTTATCTCTGAATTAACTTACGCATCCCTTGGTTTGGTTAGCATGGC
TTCTTGATATATCGAGCGTGCGATTAGTTCCTCTATCGACCCCAATAAAGGGAAGACTTGCAC--TCCCTCCGTTTCGAA
ATACAATTGCCGTGGTTTTAGTTC----------------------AAGTATTTTGAAACGGAGGGAGTAATTACGAAAT
GATTACGGTTGCTGCACTTTGTATACCATAGTTCTTATAAAATTACA-----------GTAGCAGTAGTAGT---ATATG
TTTTCCCAAGATATAAATAGACAAATGTGCCAAGGAAAGAACAGGTCCGTGCATAAAGTAAAATCAAAGGG---CGAGCA
TTACAATGCTGCTGGTACTAAACCTATGCTGCCTTTGCTTCTGACGACCTATTTGGACATATACATAGTACTCCGACCAG
GCCGATGAAGAGGTTTTTTATAGACTATC-CAGTGTTTGGGTACTTTGAATTTCTCATCTTATTATTTTTGCTAGCCAAA
TGTAGTCTTACAGAACTAGGAGTCACAC------------------------ATTTTCTACTAG----------------
-----TAGTAAACAACACTAATCATTTCTGTCGGCAAACCGGGCGCAGGGAGCACAGGGGTGGTGGACCTGCACAGGGAC
GTGCAAACCTGCGGATACGACGATGTTCAGGTGATGTGGAACATGCTGAGCTCGGAGAAACATGCCCTCGGCCACAGGCC
GGCGGCGCCTGAGAAGCCGCCGCGACGGCGGGCCTTGTTCTGGAGGGCGTCGTTCTGGAACGTCGGAAAATGCGTGGCGC
GGTGA---------------------------------------------------------------------------
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>chr6A_1_TraesCS6A01G152500
ATGCTAGGCAGGCTTTCAAGTGGTTTCCACCACCAGAGGGATGTGTGGAAATCAATGTGGAAGCCAGAGTTTCG------
--------------GCAGCGGCCTTCTGTCGCGACCGGGACGGAGCTTACCTGGGTTCCTCCATGCTGGTAATTGAGGGG
TTAAAGGATCCTACTACGGTTGAGACAATCGCATGCAGAGAGGGCATGTCTTTGGCACTGGATCTGGGAATGAATCATCT
CCAGATCGCTTCTGACTGTAAGCAGGTGGTAAACCATATCCATCAAAGAGCTGAAGGAGATCATGGTATTATCATCAAAG
AGATCCTGCAAACTTCTACCTTATTTATGTCTTGTAATTTTTCGTTTGAACCTC--GAGTCGAATTATGAGGCTCATAGG
CTTGCTAGGTTTGGTGTTTCGTTCCCTCTTGGAAGGCATTTGTGGTTGGGCATTCCGCATGACCCAATTGTAATTCCTAT
GAACGTTTTAGGTACTCAATAAAAGCCTGGCGAGCTTTTCTAAAAAAAAACTAATCCGACGGCCGTCTGTCCGTCCAGAA
ACAAAATTGCTATGATTGCCATTTCTCAAAAAAAAAAAAATGCTATGATTGCCAGCGCCCGGTTCCAACGAAGAAAAAGA
AACGCAATAGCCCGTTCAGTACAGTACAGCGCATTTGCGCCACGTGAACCTCCACGGGCGATCCGCGGCACATGCACAGG
CGATCGCACGCACGGCGCGCCCAATCAGAGGCGCCGGCGACCCTGTAAACGAATCTCATGGACCCGGGAAGCGAATCTCA
TCGAATCCGGGCCGAACCGCAGCGAACCGATCAGAGATCACAGGCCCGTCCCCGTGGGACTCGATCGCCAGCAGCAGACA
GTAGTACTAGTAGACCCCGTCCTATATAAGGCCTGGCTACCGGCGGAAATGGCTAGAAGGCACGCTCAGGAAACATCATT
GC------------------------------------------------------------------------------
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---------------------------------AGAGAGCTAGCTGTCATTTGTCCGTGTCGGGCTACGAG---------
---------CGAGCTTCGTCGCCGGCCAGCCATGGCGTGGTGGTGCGAGAGGGTCGTCGCGCCGGTGCGGCGGGCCTGGC
TCGCCGTGGCGCGGCGGGCGCGGAACCGCAGTAAGTGCAGCTACC-TAGCGCCCAGCAAATCAACCTCCATCGTTTCTGC
AACGAG---------------------------TTTATCTCTGAATTAACTTACGCATCCCTTGGTTTGGTTAGCATGGC
TTCTTGATATATCGAGCGTGCGATTAGTTCCTCTATCGACCCCAATAAAGGGAAGACTTGCAC--TCCCTCCGTTTCGAA
ATACAATTGCCGTGGTTTTAGTTC----------------------AAGTATTTTGAAACGGAGGGAGTAATTACGAAAT
GATTACGGTTGCTGCACTTTGTATACCATAGTTCTTATAAAATTACA-----------GTAGCAGTAGTAGT---ATATG
TTTTCCCAAGATATAAATAGACAAATGTGCCAAGGAAAGAACAGGTCCGTGCATAAAGTAAAATCAAAGGG---CGAGCA
TTACAATGCTGCTGGTACTAAACCTATGCTGCCTTTGCTTCTGACGACCTATTTGGACATATACATAGTACTCCGACCAG
GCCGATGAAGAGGTTTTTTATAGACTATC-CAGTGTTTGGGTACTTTGAATTTCTCATCTTATTATTTTTGCTAGCCAAA
TGTAGTCTTACAGAACTAGGAGTCACAC------------------------ATTTTCTACTAG----------------
-----TAGTAAACAACACTAATCATTTCTGTCGGCAAACCGGGCGCAGGGAGCACAGGGGTGGTGGACCTGCACAGGGAC
GTGCAAACCTGCGGATACGACGATGTTCAGGTGATGTGGAACATGCTGAGCTCGGAGAAACATGCCCTCGGCCACAGGCC
GGCGGCGCCTGAGAAGCCGCCGCGACGGCGGGCCTTGTTCTGGAGGGCGTCGTTCTGGAACGTCGGAAAATGCGTGGCGC
GGTGAGCCCCGCGACTGAATTCTGGCGTGGATAGCGGCGACACTGTCGCCATCTAATAATCTCCAATAAACCTGCTGCTA
CCATCTGGTGAGATGTACAAAGAATGATGTTCACCTGTAAGATGTTAGATGGGGGTGGGAAGAATGGGTCAGGGGCATCT
CGCCTGCTGGCTTCTGCTGTTTGTATTGCTTTCCCTGCTTTGTTGTGGAATGAATCAAAGGCGGCAGACTGTGGCTTAAT
CCGTGTGAAGATGCTACAAATTTCAAGCTCCGATCTTGTGTGCTTGTGGCATGGAATAAGCATCCAATGTCCCATGCTAA
TGTCCAAGTAAAGTGGGGCAAATGATCCAAAATAAC--------------------------------------------
-----------------------AAAAAAAAAATTAAAACACACAGATACCTCCTCCG-------CCCATTATTATAAAA
TGTTTTAACTTTTTTCTGAATCAGATATATGTAGACACGTTTTAGTGTGTTTGTTCACC-ATTTCAGTCCGTATATAACC
GTATTCAAATATCCAAACC-TCTTATAATAGTGAACGGAGGGAGTATTACACACCATACGGGTAAAGTGCTGCAATATGA
CACGAGACAACTCAAAATTGACACCATACTATTTGTGCAGTTTCAAATCAGCCTCCTATAATAGGGCAAAAAAAAGGTGT
AATGTAAAGCGACTGATTATGAATGTACATAAAGTCCCTAAAGATAGACAAAAATTCTCCATCTCCTTTAAATCACGATG
GAGATTTCAACTCCAGTGCTGCTCCAGAAAAACCACAGGCTACTTTGGAATTGTACACAAAAAAGAAAGCTGGAAGTTGG
ATGAAGAACATTCAGATTATCTTATTGACACTGAAGAGACTTCCTGCAGCCAAAGAAAAGTGAACATTAGACAAGCGCAG
AATTTCTTTAACAAAAACTATTTTGGTGCAAGCCAAACAGCTAATACTGGTTCAACCCACAAGGCATCTTTTTATAACT-
---------GTATGAATCAAAACTGCTGATA---TGCAAATCAAACTCGGACCC
>chr2B_1
ATGCTAGGCAGGCTTTCAAGTGGGTTCCACCACCAGAGGGATGTGCGAAAATCAATGTGGACGCTAGAGTTTTGGCAGGA
ACCAACATGGGTACGCAGCGGCCTTCTCTCACGACCGGGACGAAGCTTACCTTAGTTCCTCCATGCTGGTAGTTGAGGGA
TTAACAAATCCTACTACGCTTGAGGCAATCACATGCAGAGAGGGCATGTCTTTGGCACTGGATCTAGGAATAAATTATCT
ACAGATCGCTTCTGACTGTAAGCAGGTGGTAAATCATATCCATCAAAGAGCTGGAGTAGATCATGGTATTATCATCAAAG
AGATCCTACAAACTTCTACCTTATTCACTTTGTGTAATTTTTTGTTTGAACGTCGAGAGTCGAATTATGAGGCTCATAGA
CTTGCTAGGTTTGGTTTTTCGCTCCCTGTTGGGAGGCATTTGTGGTTGGGCATTCCGCATGACCCAATTGCAATTCCTAT
GAACATTTTAGCTAATCAATAAAGGTCTGGCGAGCTTTTCTCAAAAAAAACTAA--------------------------
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>chr6D_571
AAACAAAATCT---------------------------------------------------------------------
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------------------------------------------CTATGATTGCCAGCGCCCGGTTCCAACGAAAAAAAAAA
CCCTGCAGTCGTTCGT------AGTACAGCGCATTTGCGCCACGTGAACCTCCACGGGCGATCCGCGGCACATGCGCAGG
CGATCGCACGCACGGCGCGCCCAATCAGAGGCCCCGACGACCCTGTAAACGAATCTCATGGACCCGGGAAGCGAATCTCA
TCGAATCCGGGCCGAACCGCAGCGAACCGATCAGAGATCACAGGCCCGTCCCCGTGGGACTCGATCGCCCGCCAACAGAC
CG-------------CCCGCCCTATATAAGGCCTGGCTATCGGCGGAAATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTAGCTGTCAGTTGTCCGTGGCGGGCTACGAGGGAGGGAGC
AGGTCGCGCCGCGCTTCGTCGCCGGCCAACCATGGCGTGGTGGCGGGAGAGGGTCGTCGCGCCGGTGCGGCGGGCCTGGC
TCGCCGTTGCGCGGCGGGCGCGGAACCGCAGTAAGTGCGGCTACCTTAGCGCCCAGCAAACCAACCTCCATCGTTTCTGC
AACGAATTATCTCTGAATTTCCTTTCGGATTTTTTTATCTCTGAATTAACTTGCGAAT----------------------
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----ACTTGCCATGGCTTTAGTTCAAATTTGAATTAAAACCACGATAAGTATTTTGGAACGGAGGGAGTAATTACGAAAT
GATTACAGTTGCTGCACTTTGTATACTATAGTTCTTATAAAATTACACTAGTACCCTAGTAGTAGTAGTAGTATAATATG
TTTTCCCGAAATATAAATAGACAAATGTGCTGAGGAAAGAACAGGTCCATGCATAAAGTAAAATCAAAGGGGGACGAGCA
TTACAATGCTGCTGGTACTAAACCTATGCTGCCTTTGCTTATAACGGCCTATTTGGACATATACATAGTTCTAG------
GCCAACGAACAGGTTTTTTATAGACTATC-CAGTCTTTGGGTACTTTGAATTCCTTATCTTATTATTTTTGCTAGCCAAA
TGTAGTCTTAGAAAACTAGGAGCAACGCATTTTCTACCACACGAAAGCTTGTATTTTCTACTGG----------------
-----TAGTTAACAACACTAACCATTTTTGTTGGCAAACCGGGCGCAGGGAGCACAGGGGTGGTGGACCTGCACAGGGAC
GTGCAAACCTGCGGATACGACGATGTTCAGGTGATGTGGAACATGCTGAGCTCGGAGAAACATGCCCTGGGCCACAGGCC
GGCGGCGCCTGAGAAGCCGCCGCGGCGGCGGGCCACGTTCTGGAGGGCGTCGTTCTGGAACGTCGGAAAATGCGTGGCGC
GGTGAGCCCTGCGACTGAATTCTGGCGCAGATAGCGGCGACACTG-CGCCATCTAATAATCTCCAATAAGCCTGCTGCTA
CCATCTGGTGAGATGTACAGAGAATGATGCTCACCTGTAAGATGTTAGATGGGGCTGGGAAGAATGGGTCAGGGGCATCT
CGCCTGCTGGCTTCTGCTGTTTGTATTGCTTTCCCTGCTTTGTTGTGGAATGAATCAAAGGCGGCAGACTGTGGCTTAAT
CCGTGTGACGATGCTACAAATTTCAAGCTCTGATCTTGTGTGCTTGTGGCATGTAATAAGCATCCAATCTCCCGTGCTAA
TGTCCAAGTAAAGTGAGGCAAATGATCCAA--------------------------------------------TCTGTC
TTTTCCGTTTTCTCAAATTAACAAAAAAAGAATTGTAAACACACACATACCCCCCCCCCTCCCCTCCCATTATTTCAAGA
TGTTTTAACTTTTTTCTGAATCAGATGTATGTAGACACGTTTTAGTGTGTTTGTTCACCCATTTCAGTCCCTACGTAGCC
ATATTCAAATATTCAAAGCGTCTTATAATAGTGAACGGAGGAAGTATTACACACCATACGGGTAAAGTGCTGCAATATGG
CACGAGGCAACTCAAAATTGACACAATACTATTTGTGCAGTTTCAAATCAGCCTCCTATAATAGGGCAAAAAAATGGTGT
AATGTAAAGCGACTGATTATGAATGTACATAAAGTCCCTAAAGATAGACAAAAATTCTCCGCCTCCTTTAAATCACGATG
GAGATTTCAACTCCAGTGCTGCTCCAGAGAAACCACAGGCTACTTTGGAATTGTACACAAAAAAGAAAGCTGGAAGTTGG
ATGAAGAACATTCAGATTATCTTATTGACACTGAAGAGACTTCCTGCAGCCAAAGAAAAGTGAACATTAGACAAGCGCAG
AATTTCTTTAACAAAAACTATTTTGGTGCAAGCCAAACAGCTAATACTGGTTCAACCCACAAGGCATCTTTTTATAACTA
CAGCATCTAGTATGAATCAAAACTGCTGATAGTTTGCAAATCAAACTCGGACCC
>chr6B_641
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----------------------AGTACAGCGCATTTGCGCCACGTGAACCTCCACGGGCGATCCGCGGCACATGCGCAGG
CGATCGCACGCACGGCGCGCCCAATCAGAGGCACCGACGACCCTGTAAACGAATCACATGGACCCGGGAAGCGAATCTCA
TCGAATCCGGGCCGAACCGCAGCCAACCGATCAGAGATCACAGGCCCGTCCCCGTGGGACTCGATCGCCAGCAGCAGACA
GTAGTAGTAGAC---CCCGTACTATATAAGGCCTGGCTACCGGCGGAAATGGCTAGAAGGC--GCCCAGGAAGCATCATC
GC------------------------------------------------------------------------------
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---------------------AGAGAGACAGAGAGAGAGCTAGCTGTCAGTTGTCCGTGGCGGGCTACGAGGAAGGGAGC
AGGTCGCGCCGCGCTTCGTCGCCGGCCAACCATGGCATGGTGGCGCGAGAGGGTTGTCGCGCCGGTGCGGCGGGCCTGGC
TCGCCGTGGCGCGGCGGGCGCAGAACCGCAGTAAGTGCAGCTACC-TAGCGCCCAGCAAACCGACCTCCATCGTTTCTGC
AACGAA----------------------------TTATCTCTGAATTAATTTGCG-------------------------
-----------------------TTAGTTCCTCGATCGATCCCAATAAAGGGAAGACTAGTACTATCCCTCCGTTTCAAA
ATACACCTGCCATGGCTTCAGTTC----------------------AAATTTGAACTAA---------------------
-------GTTGCTGCACTTTGTATACTATAGTTCTTATAAAATTACAGCAGC--------------AGTAGT---ATATG
TTTTCCCGAAATATAAATAGACAAATGTGCCAAGGAAAGAACAGGTCCATGCATAAAGTAAAATCAA-GGG---CGAGCA
TTACAATGCTGCTGGTACTAAACCTATGCTGCCTTTGCTTATAACGGCCTATTTGGACATATACATGGTACTAA------
GCCAATGAACAGGTTTTTTTTATAGACTATCAGTGTTTGGGTACTTTGAATTTCTCATTTTATTATTTTTGCTAGCCAAA
TGTAGTCTTACAAAACTAGGAGCGACGC------------------------ATTTTCTACCACATGAAAGCTTGTATTT
TCTACTAGGAAACAACACTAACCATTTTTGTTGGCAAACCGGGCGCAGGGAGCACAGGGGTGGTGGACCTGCACAGGGAC
GTGCAAACCTGCGGATACGACGATGTTCAGGTGATGTGGAACATGCTGAGCTCGGAGAAACATGCCCTCGGCCACAGGCC
GGCGGCGCCTGAGAAGCCGCCGCGGCGGCGGGCCACGTTCTGGAGGGCGTCGTTCTGGAACGTCGGAAAATGCGTGGCGC
GGTGAGCCCCGCGACTGAACTCTGGCGCAGATAGCGGCGACACTG-CGCCATCTAATAATCTCCAATAAGCCTGCTGCTA
CCATCTGGTGAGATGTACAGAGAATGATGTTCACCTGTAAGATGTTAGATGGGGCTGGGAAGAATCGGTCAGGGGCATCT
CGCCTGCTGGCTTCTGCTGTTTGTATTGCTTTCCCTGCTTTGTTGTGGAATGAATCAAAGGCGGCAGACTGTGGATTAAT
CCGTGTGACGATGCTACAAATTTCAAGCTCTGATCTTGTGTGCTTGTGGCATGGAATAGGCATATACTATACATTTAAAA
TCAGAATTAGGGCTCATCTCATTATACCTGAATTTGATGCGAGGCAACAGTTTGTAACTAAATAGAATAGCAGCTCTGTT
TTCCCCGTTTTCTCAAAATAACAGAAAAGGGATAGTAAACACACAAATACTCCCTCCG-------CTCAGTATTAT---A
TGTTCTAACTTTTTTCTGAATCAGATGTATGTCGACATGTTTCAGTGTGTTTGTTCACTCATTTCAGTCCGTATGTAGCC
ATATTCAAATATCCAAACC-TCTTATAATAGTGAACGGAGGGAGTATTACACACCATACGGGTAAAGTGCTGTAATATGA
CACGAGACAACTCAAAATTGACACCATACTATTTGTGCAGTTTCAAATCAGCTTCCTATAATAGGGG-AAAAAATGGTGT
AATGTAAAGTGACTGATTATGAATGTACATAAAGTCCCTAAAGATAGACAAAAATTCTCTGTCTCCTTTAAATCACGATG
GAGATTTCAACTCCAGTGCTGCTCCAGAAAAACCACAGGCTACTTTGGAATTGTACACAAAAAAGAAAGCTGGAAGTTGG
ATGAAGAACATTCAGATTATCTTATTGACACTGAAGAGACTTCCTGCAGCCAAAGAAAAGTGAACATTAGACAAGCGCAG
AATTTCTTTAACAAAAACTATTTTGGTGCAAGCCAAACAGCTAATACTGGTTCAACCCACAAGGCATCTTTCTATAACTA
CAGCATCTTGTATGAATCAAAACTGCTGATAGTTTGCAAATCAAACTCGGACCC
>SNPs
-----------------------S---------------------S-S-------------S--S-------S-------
---------------------------S--S-----------S---------SS-----------------S-------S
----SSS-----------S-----S-----S----------------------------------S-----S---S----
S--------------------------------S-------------------S--S-----------------------
-------S-----------------S-SS-SS----------S--------S---------------------------S
---------------S-----S-----S----S-------------------------------------S---------
----S------S--S--------S-S---------------S------------SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------S-----S-
SS-SSS-SSSSSSSS-SSSSSS-----------------------------------------------------S----
--------------------------------S---S-------------------------------------------
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------S---SSSSS----------------------------------------------SS--S------S------S
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-------------------------------------------------S---------S--------------------
-----------S----------------S--------------S------------------------------------
------------------------------------------------------------S-------------------
-----S----------------------------------------------S--S--SSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS----------S-----S------------------S-S----------------S--
-----S-----S---S----------------------------------------S-----------------------
------S-------------------S-----------------------------------S-----------------
-------S-S--------------------------------------S-------------------------------
----------------------------------------S-S---S-------------------------SSSSSSSS
---S-----S----------------------------------------------------------------------
------------S---------SS--S-----------------------------------------------------
---------------------S-----S---S------------------------------------------------
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------------------------S---------SS--------------------------------------------
---------------------------SS----------------S-----------------------S----------
-------------------S----------------------------------S-------------------------
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--------S---------------------S-------------------------------------S----S------
---------------S-----------------SSS--------------------------------------------
-----------------------------S--S-SS---------S-----S--------------------------S-
--------------------------S-----------------------------------------------S--S--
S-------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
------------------------------------------------------------S-------------------
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>forward_563
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---------------------------------------------------------------CGTCTGTCCGTCCAGAA
ACA-----------------------------------------------------------------------------
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>reverse_2535
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------------------------------------------------------GTGGGAAGAATGGGTCAGGG------
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