>input_sequence_65934
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----------------------------------GTATTTATTGTGGTTTCTGATCAACTTCCCTGTCACTGCATTGCCC
CAAGAGCCCCCCAACATGGAAGACACCGTTGTCCCTGCTACTCTGCCAATGCACACCACTAATTCCTGAGTTTTTTTTGT
TTTTTTTTGGCA----------TTGACACATCAATTCTGGCGAGTCTCGATTAAGCTACCCTTTCACAAGAAGAGACAAG
AATGGGTATCGTCACAATACACAAGAGTGAAAGAGAG---AAAGCCCTGTATGATTATTGCTTTCCCCGTAAGCAGAGAC
TGCGCGCTTATTGCTCGCCCAGCTTCGGAGTGTAGTTACTAGGGCATTTTTTTTTTGTTCCCATCGTCTTTCGGCAAGCA
TTTCTTTTTGCAGCGTTGTGGACTTCACACTTGGCATAGACCAATGGCAGCTTGCGTGCTGTGCCTAGTAAAAAATGT--
---TGGCGAGAGCGACGTGCTTGGCTTGAGACCAGTCGTAGTATAATAATTGCCCCCTTCCTCTGCGTTTGTGTTCGTGT
TGGTGATCCAGCCATGTTAGGACTTTGGAGGTAGGAGTAGTCCAGGATCGGAGAGAGATAGAGA-GCGTCCATGGACGTG
TTCATACACGAGGACTACGTGAACAAGCGCAACATGGTGAAGAGGGAGCAGAGGAAGAAGACGCAGTTGCAGGTGCTGCA
GCTGGGCAGCCCAGGCGCATGCCGGCCGCCGCCGGCGCACAGGGAGGACAGCCTGGGAGCGGGAGCGCCGAGGCAGTGCC
TGACGCCAACCGGCGTCTTACCTTCGTCCGCCGTCGGGTCTCCCGCGTCAGGCTCGTCGGAGGGAGCCATCTCATCGGAT
CACCGCCGTCACCTCTTCGATTGCCTGAAGCCGTACTAGGCAGGCAACAGAGGTTATGTGTGAGGTTAAAGA--------
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>chr2B_1_TraesCS2B01G306900
GAAGACATTTGCCTTTGTGATTGGTAATGAACAACCCAATTGTAGAAATGCCTTTCTCATGTTATAATAGGAAGGGAAGT
ACCCCCCTTAACTCCTGTCAAGTGAGTAAAAGCTCTGAGATACCAAGTAAGAACCTAACATGTTTTA-------------
------------------------TAGGCTTGTAGAATAATGATTACTCCC--C-TTTTTTTATGGTTTAGATTTTAGCC
ATGCATATATCATGAAAATAACATCAGATGAGAATGAAGAGCCAATATGTGTGAGATTACATTTACTTTGATGAATTGTT
TTGATTTGTAAC-------TACCATCTTTGCAACCCTTTTGGGGAACCATAGCTGTAAGCAAGTAGAACTAACACCAACT
CTTCACTACTTTCTTGCTATGCCTTGCCAGCTTTAACAGCCGAACAGTTGATGAGGATACCTGTTGGGAGCAGAAGAAAG
TACCATGACGATGTGACTGTCATTGTTATCATCCTTGGGAACGCACGAAGGACGGTGAGCGCATCAACTTCGATATGAAA
GACG-GACGATCTCAAGAAGAGGCTGTGAGCCGCATACAATTTTGTGGGTGTTAGGACATGAATCTTTTTCAGGGTTCTG
GTGTGATAGTCAATAATAAACATAATAATGTGTGTATATCCTTTGGAAATTTTGGGTCCGAACAGATATCTTTTGTTAAG
TCAAAAGGTGCACCAAGACTTATTCCGCTTAATTCTGCACGCGGTAACGAAAAATTTCGCCGCTCTTATTCGGCATTCCG
ATTGCATGAGCACTTGA-----------------TTTCAGCTCTCATGACCTAGCGTGATCTATGGTGAAGCTTTACTGA
TCTGAAGATAACATGGAAACTGGGAGAGGATATATGAAAAAGGCCAAAGGCCAGTCTAATGTGTT-GGTCCTGTTGAGTT
TGCGGGATGCATTTGCTTAGCG--------ACCACGAGGTGTTTTGTGGTAGGGGAGGGGTGGGTGATGAATCCTGGTCA
CATCACACAAGCTACCAATCTTTCTACATCTCCAGTATTTATTGTGGTTTCTGATCAACTTCCCTGTCACTGCATTGCCC
CAAGAGCCCCCCAACATGGAAGACACCGTTGTCCCTGCTACTCTGCCAATGCACACCACTAATTCCTGAGTTTTTTTTGT
TTTTTTTTGGCA----------TTGACACATCAATTCTGGCGAGTCTCGATTAAGCTACCCTTTCACAAGAAGAGACAAG
AATGGGTATCGTCACAATACACAAGAGTGAAAGAGAG---AAAGCCCTGTATGATTATTGCTTTCCCCGTAAGCAGAGAC
TGCGCGCTTATTGCTCGCCCAGCTTCGGAGTGTAGTTACTAGGGCATTTTTTTTTTGTTCCCATCGTCTTTCGGCAAGCA
TTTCTTTTTGCAGCGTTGTGGACTTCACACTTGGCATAGACCAATGGCAGCTTGCGTGCTGTGCCTAGTAAAAAATGT--
---TGGCGAGAGCGACGTGCTTGGCTTGAGACCAGTCGTAGTATAATAATTGCCCCCTTCCTCTGCGTTTGTGTTCGTGT
TGGTGATCCAGCCATGTTAGGACTTTGGAGGTAGGAGTAGTCCAGGATCGGAGAGAGATAGAGA-GCGTCCATGGACGTG
TTCATACACGAGGACTACGTGAACAAGCGCAACATGGTGAAGAGGGAGCAGAGGAAGAAGACGCAGTTGCAGGTGCTGCA
GCTGGGCAGCCCAGGCGCATGCCGGCCGCCGCCGGCGCACAGGGAGGACAGCCTGGGAGCGGGAGCGCCGAGGCAGTGCC
TGACGCCAACCGGCGTCTTACCTTCGTCCGCCGTCGGGTCTCCCGCGTCAGGCTCGTCGGAGGGAGCCATCTCATCGGAT
CACCGCCGTCACCTCTTCGATTGCCTGAAGCCGTACTAGGCAGGCAACAGAGGTTATGTGTGAGGTTAAAGAATAAACCT
GGGGTTCTTCTGATGGTGAAGTTTGTTGCAACCCATTTTTGTGCTCGTATTTCAGCTATGTATGTATGGGCCGTTACAAG
ATGAACCCTTGTGAAGAGTGTTGCCTGCTATGAACAACTACAGCTTTTGGAATGGATTGTGTTACTGCATTTAAACTCTC
TAAGCACAACATTGCAGTACTGAGTTTGGCCTTGAGCTATCCCCTATTATGGAAGATTTGCAACAACATGAGCATCCCTC
CTAAGGTACTTCCAGATATGGAGATCTCTACACTCTGGCACTGGCTGCAGCTTCCTTGATTTGCTCGATTGTAAACACTC
CGAAGAAGCTGTCATCTATGACGGCGTTGATCACGGCATAGGCGACATCGTCCACGTTCACAGGGGGTGCTAGGACCAGG
TCCGAACCAGGCAATGCACTCAATGGTTTGGTGAAATTTTCGACAGAGGAAAGTAGCTTCTCTAGTGGTTGCCCTACGAT
GTCGAGCGGTATCTCGTAGCCATCGACTTTCCTTTTACCGTAAATAAACCCAGGCCTCAATACAACACCTGAAAGATAAA
CGTCAGATTGGATATACTCTCATAAACACATATGAACAAGATGAAGTAGCAGAGATCTAACCTGAGGATGGGTATTTGGA
GAGGACTTCAGATTCAGCCTTTCTCTTACCAGTGAAATAGCCCGAGGTAAGGAGAAAGGATGGAAGGTTGTAATCATGAA
CAGAGATCAAAATAAATTTCGGGATCCCTGCAGAAGAACATAACAAACTGTTTATG-TATGTTCTTTGATAT-TTTCAGA
CAATAAAAGGAAGAGTAAGCCAGGTGCTAGGCAA------CACAATATAACTTAATTGCGAAGTTTTCGACTATACAGCA
---AGAAGTCTCAGCCGTTTGAAGTTTTCAATCTTTAGTTGCGAAGGTTTAACCAGGATAGCAAGCTCCCTAACGCAATA
TAACTTAAAATTTGATATTCCAGCAAA-TCCACCCTTAATGATA
>chr2D_1
GAAGACATTTGCCTTTGTGATTGGTAATGAACAACCCAATTGTAGAAACACCCTTCTCATGTTATAATAGGAAGGCAAGT
A-CCCCCTTAACTCCTGTCAAGTGAGTAAAAGCTCTGTGATACCAAGTAACAACCAAACATGTTTTAACTTAAAAGTATG
TCATTGATGTCAGATAGCTATTTATAGGCTTGTAGAAAAATTATAAGTCCCTCC-TTTTTTTTTGGTTTAGACTTTAGAC
ATGCATATATCATGACAATAACATCAGATGAGAATGAAGAGGCAGTATGTGTGAGAGTACATTTACGTTGATGAATTGTT
TTGATTTTTGTAACTAGAGTACCATCTTGGCAACCCTTTTGGGGAACCATAGCTGTAAGCAAGTAAAACTAACACCAACT
CTCCACTAATTTCTTCCTATGCCTTGCCAGCTTTAACAGCTGAACAGCTTATGAGGATACCTGTTGGGAGCAGGAGAAAG
TACCATGACGACGTGACTGTCATTGTTATCATCCTTGGGAACGCACGAAGGACGGTGAGCGCATCAACTTCGATATGAAA
GACGTGCCGATCACAAGAAGAGGCTGTCAGCCGCATAAAATTTTGTGGGTGTTAGGATATGAATCTTTTTCAGGGTTCTG
GTGTGATAGTCAATAAT---CATAATAATGTATGTATATCCC--GGAAATTTTGGGTGCGAACAGATATCTTTTGTTAAG
TCAAAAGGTGCACCGAGACTTGCTCCGCTTAATTCTGCATGCAGTAACGAAAAATTTCGCCGCTCTTATTCGGCATTGCG
ATTGCATGAGCACTTTAGAGCGGGATGTGATGCCTTTCAGCTCTTATGACCTGGCACTATTTGTGGTGAAGCTTTACAGG
TCTGAAGATAAAATGGAAACCGGGAGAGGATCTATGAAAAAGACC-------AGTCTAGTGTGTTGGGTCCTGCTGAGTT
TGCGGGATGCATTTGCTTAGCGTCTTAGCGACCACAAGGTGTTATGTGGTAGGGGAGGGG----TGATGAATCCTGGTCA
CATCACACAAGCTACCAATCTTTCCACATCTCCAGTATTTTTTGTGGTTTGTGATCAACTTCCCTGTCGCTGCATTGCCC
----AGCCCCCCGACCTGGAAGACACCGTTGTCCCTGCTACTCTGCCAATGCACACCACGAATTCTCGAGCTTTTTTTCT
TTCTTTCTTTCTTTTTTGCCATTTGACACATCAATTCTGACGAGTCTC-------CTACCTTTTCACAAGAAGAGACAAG
AATGGGTATCATCACAATACACGAGAGTGAAAGAGAGAGAAAAGCCCTGCATGATTATTGCTTTCCCCGTAAGCAGAGGC
TGCGCGCTTATTGCTCACCCAGCTTCGAAGTGTAGTTATTAGTGC--TTTTTTTTTGTTGCCATCGTCTTTCGGCAAGCA
TTTCTTTTTGTAGCGTTGTGGACTTCACACTTGGCATAGACCAATGGCAGCTTGCGCGCTGTGCCTCGTAAAAAATGTTA
AAATGGCGAGAGCGACGTGCTTGGCTTCAGACCAGTCGTAGTAT---AATTGCGCCCTTCCTCTGCGTTTGTGCTCGTGT
TGGTGATCCAGCCATGTTAGGACTTTGGAGGCAGGAGTAGTCCAGAATCGGAGAGAGATAGAGAGGCGTCAATGGACGTG
TTCATCCACGAGGACTACGTGAACAAGCGCAACATGGTGAGGAGGGAGCAGAGGATGAAGATGCAGATGCAGGTGCTGCA
GCTTGGCAGCCCAGGCGCGTGCCGGCCGCCGCCGGCGCACGGGGAAGACAGCCCGGGAGCGGGAGCGCCGAGGCAGTGCC
TGACGCCAACCGGCATCTCACCGTCGTCCATCATCAGGTCTCCGTTATCAGGCTCGTCGGAGGAAGCCGTCTCATCGGAT
CACCGCCG---CCTCTTCGATTGCCTGAGGCCGTACTAGGCAACC----GAGGTTATGTGTGAGGTTAAAGAATAAACGT
GGGGTTCTTCTGATGGTGAAGCTTGTTGCAACCCATTTTTGTGCTCGTATTTCAGCTATGTATGCATGGGCCGTTACAAG
ATGAACCCTTGTGAAGAGTGTTGCCTGCTATGAACAACTACAGCTTTTGGAATGGATTGTGTTAGTGCATTTAAACTCTC
TAAGCACAGCATTGCAGTACTGAGTTTGGCCTTGAGCTATCCCCTATTATGGAAGATTTGCAACAACACGAGCATCCCTC
GTAAGGTACTTCCAGATATGGAGATCTCTACACTCTGGCACTGGCTGCCGCTTCCTTGATTTGTTCGATTGTGAATACGC
CAAAGAAGCTGTCGTCTATGACGGCGTTGATCACGGCGTAGGCGACATCGTCCACGTTCACAGGGGATGCAAGGACCAGG
TCCGAACCAGGCAATGCACTCAATGGTTTGGTGAAATTTTCGACAGAGGAAAGTAGCTTCTCTAGTGGTTGTCCTACTAT
GTCGAGTGGTATCTCGTAGCCATCGACTTTCCTTTTACCGTAAATAAACCCAGGCCTCAATACAACACCTGAAAGATAGA
GGTTAGATTCG--ATACTCTGATAAACACATATGAACAAAATAAAGTAGCAGAGATCTAACCTGAGGATGGGTATTTGGA
GAGGACTTCAGATTCAGCCTTTCTCTTACCAGTGAAATAGCCCGGGGTAAGGAGAAAGGATGGAAGGTTGTAATCATGAA
CAGAGATCAAAATAAATTTCGGGATCCCTGCAGAAGAACATAGCAAACTGTTTATGTTATGTTCTTTTATATTTTTCAGA
CACTAAAAGGAAGAGTAAGCTAAGTGCTAGGCAACCGCAACACAATATAACTTAACTGCGAAGTTTTCAACTATACAGCA
AGGAGAAGTCTCAGCCGTTTGAAGTTTTCAATCTTTAGTTGTGAAGGTTTAACCAGGATAGCAAGTTCCCTAACACAATA
TAACTTAAAATTTGATATTCCAGCAAA-TGCACCCTTAATGATA
>chr2A_12
-----------CCTTTGTGATTGGTAATGAACAACCCAATTGTAGAAACACCTTTCTCATGTTATAATAGGAAGGCAAGT
A-CCCCCTTAACTCCTGCCAAGTGAGTAAAAGCTCTGTGATACCAAGTAACAACCAAACATGTTTTAACTTAAAAGTATG
TCATTGATGTCAGATAGCTATTTATAGGCTTGTAGAAAAATTATAAGTCCCTCCTTTTTTTTATGGTTTAGACTTTAGAC
ATGCATATATCATAACAATAACATCAGATGAGAATGAAGAGGCAGTATGTGTGAGAGTACATTTACGTTGATTAATTGTT
TTGATTTTTGTAACTAGAGTACCATCTTGGCAACCCTTTTGGGGAACCATAGCTGTAAGCAAGTAAAACTAACACCAACT
CTTCACTAATTTCTTCCTATGCCTTGTCAGCTTTAACAGCTGAACAGCTTATGAGGATACCTGTTGGGAGCAGGAGAAAG
TACCATGACGACGTGACTGTCATTGTTATCATCCTTGGGAACGCACGAAGGACGGTGAGCGCATCAACTTCGATATGAAA
GACT-GCCGATCTCAAGAAGAGGCTGTGAGCCGCATAAAATTTTGTGGGTGTTAGGACATGAATCTTTTTCAGGGTTCTG
GTGTGATAGTCAATAATAAGCATAATAATGTGTGTATATCCTTTGGAAATTTTGGGTGCGAACAGATATCTTTTGTTAAA
TCAAAAGGTGCACCGAGACTTGCTCCGCTTAATTCTGCACGCGGTAACGAAAAATTTCACCGCTCTTATTCGGCATTGTG
ATTGCATGAGCACTTTAGAGCGGGATGTGATGCCTTTCAGCTCTCATGACCTAGCACTATCTGTGGTGAAGCTTTACTGA
TCTGAAGATAAAATGGAAACCGGGAGAGGGTCTATGAAAAAGACCAGTCCG-------GTGTGTTGGGTCCTGCTGAGTT
TGCGGGATACATTTGG--------TTAGCGACCACAAGGTGTTATGTGGTAGGGAAGGGG----TGGTGAATCCTGGTCA
CATCACACAAGCTACC-ATCTTTCCACATCTCCAGTATTTTTTGTGGTTTCT-ATCAACTTCCCTGTCGCTGCATTGCCC
CAAGAGCCCCCCAACCTGGAAGGCACCGTTGTCCCTGCTGCTCTGCCAATGCACACCACGGATTCTAGAGCTTTTT----
-----------TTTTTTGCCATTTGACACATCAATTCTGACGAGCCCCGATTATTG----CTTTCACAAGAAGAGACAAG
AATTGGTATCGTCACAATACACGAGAGTGAAAGAGAGA---AAGCCCTGCATGA--------------------------
-------TTATTGCTCGCCCAGCTTCGCAGTGTAGTTACTAGGGCATT--TTTTTTGTTGCCATCGTCTTTCGGCAAGCA
TTTCTTTTTGTAGCGTTGTGGACTTCACACTTGGCATAGACCAATGGCAGCTTGCGTGCTGTGCCTCGTAAAAAATGTTA
AAATGGCGAGAGCGACGTGCTTGGCTTGAGACCAGTCGTAGTAT---AATTGCCCCCTTCCTCTGCGTTTGTGCTCCTGT
TGGTGATCCAGCCATGTTAGGACTTTGGAGGTAGGAGTAGTCCAGTATCGGAGAGAGGTAGAGA-GCGTCCATGGACGTG
TTCATCCACGAGGACTACGTGAACAAGCGCAACATGGTGAGGAGGGAGCAGAGGAAGAAGACGCAGTTGCAGGTGCTGCA
GCTGGGCAGTCCAGGCGCATGCAGACCGCCGCCGGCGCACGGGGAGGACAGCCCGGGAGCGGGAGCGCCGAGGCAGTGCC
TGACACCAACCGGCGTCTCACCCTCGTCCACCGTCGGGTCTCCCGCATCAGGCTCGTCGGAGGGAGCCGTCTCATCGGAT
CACCGCCGTCACCTCTTCGATTGCCTGAAGCCGTACTAGGCAACC----GAGGTTATGTGTGAGGTTAAAGAATAAACCT
-GGGTTCTTCTGATGGTGAAGCTTGTTGCAACCCATTTTTGTGCTCGTATTTCAGCTATGTATGTATGGGTCGTTACAAG
ATCAACCCTAGTAAAGAGTGTTGCCTGCTATGAACAACTACAGCTTTTGGAATGGATTGTGTTAGTGCATTTAAACTCTC
TAAGCACAGCATTGCAGTACTGAGTTTGGCCTTGAGCTATCCCCTATTATGGAAGATTTGCAACAACATGAGCATCCCTC
GTAAGGTACTTCCAGATATTGAGATCTCTACACTCTGGCACTGGCTGCCGCCTCCTTGATTTGCTCGATTGTGAACACTC
CGAAGAAGCTGTCGTCTATGACGGCGTTGATCACGGCGTAGGCGACATCGTCCACGTTCACAGGGGGTGCGAGGACCAGG
TCCGAACCAGGCAATGCACTCAATGGTTTGGTGAAATTTTCGACAGAGGAAAGTAGCTTCTCTAGTGGTTGCCCTACGAT
GTCGAGCGGTATCTCGTAGCCATCTACTTTCCTTTTACCGTAAATAAACCCAGGCCTCAATACAACACCTGAAAGATAAA
TGTTAGATTGGATATACTCTGATAAACACATATGAACAAGATAAAGTAGCAGAGGTCTAACCTGAGGATGGGTATTTGGA
GAGGACTTCAGATTCAGCCTTTCTCTTACCAGTGAAATAGCCCGAGGTAAGGAGAAAGGATGGAAGGTTGTAATCATGAA
CAGAGATCAAAATAAATTTCGGGATCCCTGCAGAAGAACATAGCAAACTGTTTATGTTATGTTCTTTGATATTTTTCAGA
CAATAAAAGGAAGAGTAAGCTAACTGCTAGGCAA------CACAATATAACTTAATTGCGAAGTTTTCGACTATACAGCA
---AGAAGTCTCAGCCGTTTGAAGTTTTCAATCTTTAGTTGCAAAGGTTTAACCAGGATAGCAAGCTCCCTAACACAATA
TAACTTAAAATTTGATATTCCAGCAAAATGCACCCTTAATGATA
>SNPs
------------------------------------------------SS-------------------------S----
-S-----------------------------------S------------S----S------------------------
-------------------------------------S---S--S-S-------------------------S-----S-
---------------S-------------------------S--S-----------S---------S-------------
-------S-SSS----------------S------------------------------------S--------------
--------S------S------------------------S------S-S-----------------------S------
-----------S--------------------------------------------------------------------
------S------------------------------S------------------------------------------
-------------------S-------------------------------------S----------------------
--------------S------SS------------------------------------------------------S--
---------------S---------------------------------------SSS----S-----------------
-----------S--------S----------S----------S---SSSSSS------S--------------S------
-----------------------------------S-------S----------------SSSS----------------
------------------------S---------------S---------------------------S-----------
---------------S-------------------------------------------S-----SS---S-------S-
--S---S-SS-S---------------------------S-------------SS-------------------------
----------------------S--------------------------S----------------------------S-
---------------------------S-------------------------------S--------------------
----------S-------------------------------------------------------S-------------
--------------------------------------------SSS--------------------------S------
---------------------------------------------S----------------------------------
-----S----------------------------------S---------------------------------------
----------------------------------------S------------S--------------------------
------------------S---S------S----------------S---------------------S-----------
------------------------------------------SS-SSSS-------------------------------
---------------------S----------------------------------------------------------
----------------------------------------------------------------S---------------
--------S-----------------------------------------------------------------------
S-----------------------------------------------S-----------------------S-------
-------------S-----------------------S--------------------------------S---------
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S--S----------------S---------------------S-------------------------------------
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------------------------------------------S-------------------------------------
--------------------S-S---------------------------------------------------------
--------------------------------------------------------------------------S-----
-----------------------------S--------------
>forward_1021
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-----------------------------------------TTTTGTGGTAGGGGAGGGGT-------------------
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>reverse_2358
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-------------------------------------ATAGGCGACATCGTCCACG------------------------
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