>input_sequence_65900
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-------------------------------------------------------------ATGTGGTCGGGAGCGGCAG
CCGCGGCGGCG---------CGCACCGTGTCCCCGCCGCTCCACGCGCCGACGTCCCTGATCGGGCGGCGCGGCGCGGGG
CGGCCGTCGACGGTGTCGGTGCGCGCGGGCGGCGGCGG---GCTGATGGACTTCGTGGGCGGGGACCTGGTGAAGCCGGA
CCTGGGGCGGTGGCTGGACGACGTGGAGGAGCACAAGGCGCTGGCCATCTACCCGCCGCACGAGGGCGGCTACGAGGGCC
GCTACCTCAACCGCCTCCGCTACCAGGGCTACTACTTCCTCGACCTCTCCGCGCGCGGCCTCGGCGACCCCGAGTCCACC
CTCACCAAGATCCACCCCGTCTGCCCGGTCCGTCAGCAGAGCCGACGATGATGCATTTCCCTTTCGCCGCCATTAATGTC
GTCTGCTCTGCTTAGCTTAG-CTGACTGGGGGGCGCTGCTTGCTTTGCTGCTGCAGCCTAGCCTCGGGAGGCAGCCGGTG
GCGAGGTGGTACTTCCCGCCGGAGGTGGACTACAGGCTCAGCCTGCTGCACCCGGACGCCAAAGGGCTCATCGTCTGGGT
CTACGAGGCCAAGGTCTCCCCCATTCTCTCGCCACTCTCACACGTTGCTCATCGGCTCTGCTATTTCTCATCGTT----G
TCGCGTGTTCGTTCCGTCTGCAGGTTCTGTCCAAGGCCGAGCTGCAGTTCCTGGCCATGCTCCCCGACCTCCGCCCCAAA
GTCAGGGTGATCGCGGAATGCGGCAACTGGTACG----TCAATCTCCACCTGAACTCTCACTGAATTT---------ACC
AGAATC---------------------TGTGAATAACTTTCGAGCCGATTTGATTGATGCAGGAGAAAATTCATCTGGAA
ACCGCTGAAGCAAATATCGGGCCTCGAGCCTGATCCGGACGCCGAGGAATGA----------------------------
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>chr3A_1_TraesCS3A01G407200
GAATATAAATTTTCTGCATACATTAACATCTTTCAAATATGATAAAAATTCACATATCTAAACTTTTTTT-AAATACTTA
AAACGATTGTACACATGAATATAATGTTTGTATACATGAACCTTTTTAGATATGATGAACATTTTTTTCCATCTATATAT
TTTTTTAATCCA-----AAAAAATTCTGAAAGGTGTGTAAACATTTCTTAGCACATG-ATTTTTTTGCGTACATGAATAT
TTTTTAATAC-GTAATGAATAGTTCTATTTCATA---TATATGAACATTTATTATTACATATGTGACAG-TTTGTTATTT
CACAACACAATACCTACCATTTTCCAAACCTTTTTGACAACATTACTTAAAGCCGGTTGAGAAAAAATATCTCATTTTCC
CCACAAATACATTATTTTTATATTATCC---AATTCTCCTTTTACATTATTTTTCTAAAAACTGATAACTAAATAAAAGG
ACCGAAACCAGGCAGCAAGCGTTCGAAGCGTGTTTTTTTCTCTGAGATTTGAGTTTCTGTGTTGTATGCTCCGGTTTTGA
ATGCCTTGCTTTGGGTTTTCAT-TTTTTTTCTATTTCTAATTTTTATTTTCATCATATGTGT-TAACCTCTCACCCCTTG
GATCCATGAAAAAAAAAATACCTTGCGCCACTTGCTGTCACCTGAGACATTTCGCCGGCAAAAAGGAAATTC-TTTTTAC
CCTGCAAAAGGAAA---AAAAAACGTTTGCAAGTGTACCCCTACCTAGTGATTACGAGACTTCTGTACTCTGTTATCAGT
TTCAGCAATAAGATTTGGGGTGAGAACTCTTCTACGACCAACATGGAAGATGGAACCCAACAACACCGCGGCCAATCCAA
ACGGATCGCCTAACGAACGAGCAGTGCCAAGACTTATCCCCTCGCGGTTACCTTCCCGCCACAGGCTGCCGCGGCAACTC
AACCCACACACACGCACACGCTGACACACAGGCAGCAGCGGCGGCGGCAGCGGAACCAAGCATGTGGTCGGGAGCGGCAG
CCGCGGCGGCG---------CGCACCGTGTCCCCGCCGCTCCACGCGCCGACGTCCCTGATCGGGCGGCGCGGCGCGGGG
CGGCCGTCGACGGTGTCGGTGCGCGCGGGCGGCGGCGG---GCTGATGGACTTCGTGGGCGGGGACCTGGTGAAGCCGGA
CCTGGGGCGGTGGCTGGACGACGTGGAGGAGCACAAGGCGCTGGCCATCTACCCGCCGCACGAGGGCGGCTACGAGGGCC
GCTACCTCAACCGCCTCCGCTACCAGGGCTACTACTTCCTCGACCTCTCCGCGCGCGGCCTCGGCGACCCCGAGTCCACC
CTCACCAAGATCCACCCCGTCTGCCCGGTCCGTCAGCAGAGCCGACGATGATGCATTTCCCTTTCGCCGCCATTAATGTC
GTCTGCTCTGCTTAGCTTAG-CTGACTGGGGGGCGCTGCTTGCTTTGCTGCTGCAGCCTAGCCTCGGGAGGCAGCCGGTG
GCGAGGTGGTACTTCCCGCCGGAGGTGGACTACAGGCTCAGCCTGCTGCACCCGGACGCCAAAGGGCTCATCGTCTGGGT
CTACGAGGCCAAGGTCTCCCCCATTCTCTCGCCACTCTCACACGTTGCTCATCGGCTCTGCTATTTCTCATCGTT----G
TCGCGTGTTCGTTCCGTCTGCAGGTTCTGTCCAAGGCCGAGCTGCAGTTCCTGGCCATGCTCCCCGACCTCCGCCCCAAA
GTCAGGGTGATCGCGGAATGCGGCAACTGGTACG----TCAATCTCCACCTGAACTCTCACTGAATTT---------ACC
AGAATC---------------------TGTGAATAACTTTCGAGCCGATTTGATTGATGCAGGAGAAAATTCATCTGGAA
ACCGCTGAAGCAAATATCGGGCCTCGAGCCTGATCCGGACGCCGAGGAATGAGGAGCCACCCTCCGGCAGCTACCTCGTT
CAATCTCTCGCCTTACGCTCTGTTTTCAGCTTTGTACTG-AGGAGCACGAGAAAGGATGTACATAAGTCTACATTTTGCT
CAGTTT-----------------CACAAGAGAATCATCAATCGTGTAAAGCCTTTCAAATATACAG--ATCCAACAAATC
AAATCATATATGCAA-GCTCACACGCGT-TCCGATACAGTC--------AGAGGCCTCAGCTTCTGGATTCAGGTCCACT
GCACATGCACAGCACGGCACGGCACGGCACGGCCAAAATGTTCAGCGACGCAGGTACACGAGGTCGGTCCTGAGCAGGAA
GGGGTAGCCGATCCCCCTCCTCTTGGAAGGGAACATGACGAACAGGAGGCTGACGACGAAGCCGACGACGAGGGGCACGG
TGTTCACCACCTTCCTGGGCGCGCCGGGGTAGTAGCACCGGACGATGTCGTGGTGGGAGGCGGCGAAGGTCACGAAGGCC
ACCAGGGAGAGCGCGGTGTGGAACAGGTCCGACCACCGCAGCCTGTACCTCTCCGGCTCCCTCGGCGCCTTCCTCCGGCT
CCCCCCGCCGGCGCAGAACGTCGCGATACCCGTCGGGGTGGCCACGCCGTAGCGGAGCCGGCCCGTGGCGGAGCGGAAGC
TGTCGGTGAGCGTGAAGAAGACGCAGGAGGCGGCGCAGAGCAGCACGAACGCGCCGGTGAGCACGCGGTTGACGCGCGCG
CACTTGCCGTCGTCGGTGACCAGCGGCGCGAAGATGGCGAAGGTCAGGATGGTGGCCGTCGGGAGGAGCACGTTGAGCCG
GGCCGTGCCGCTCAGGACGAGGTTCATGACCAGGATGAAGCTCGAGGTGTCGTCAGCGTCGTCATCGTCGGCGTCTTGGT
GCGGTTCACCGGCGTCTTTGCTGGTCTGATCGATGAGCACCTTGTATTCTTCTCCTTCTTGCTCAGCCATTGCCGGTGCG
TGTGCAAGCGG--GTTTGAGATTGTTGGGTTTGATGAGACGAGA
>chr3B_1
GAATATAAATTTTCTTCATACATTAACATCTTTCAAATATGATAAAAATTCACATATCTAAACTTTTTTAAAAATACTTA
AAACGATTGTATACATGAATATAATGTTTGTATACATGAACCTTTTGGGATATGATGAACATTTTTT-CCATCTATATAT
TAATTTTTTTAAAATCCAAAAAATTCTGAAAGGTGTGTAAACATTTCTTAACACATGAATTTTTTTGCGTACATGAATAT
TTTTTAAATATGTAATGAATAGTTCTATTTCATACTATATATGAACATTTATTAATACATATGTGACATTTTTGTTATCT
CACAATACAATACTTAATATTTTCCAAACCTTTTTGACAACATTACTTAAAACCGGTTGAGAAAAAATATCTCATTTTCC
CCACAAATATT---TTTTTATATTATCTAGTAATCCTCTTTTTACATTATTTTTCTCCGGA-------------------
----------------------------------------------ATTCTAGTTTTTGTGTTTTATGCTCCAGTTCCTT
ATGCCTTGCTTTGGGTTTTCATGTTTTTTTCTATTTCTAATTTTTATTTTCATCAATTTGTACTAACCTCTCACCCCTTG
GATCCATGAAAAAAAAAACTTA---CGCCACTTGCTGTCACCTGAGACATTTCGCCCGCAAAAAAGAAATATTTTTTTAC
CCCGCAAAATGAAAATGAAAAAACGTTTGCAAGTGTACCCCTACCTAGTGATTACCAAACTTCTATACTCTGTTATCAGT
TTCAGCAATAAAATTTGGAGCGAGAACTCTTTTACGACCAACATGGAAGATGGAACCCAACAACACCACGGCCAAGCCA-
ACGGATCGCCTTGGGAACGAGCAGCGCCAAGACTTATCCCCTCGCGGTTACCTTCCCGCCACATGCTGCCGCGGCGACTC
AACCCACACACACGCACACGCTGACACACAGGCAGCAGCGGCGGCGGCAGCGGAACTAAGCATGTGGTCGGGAGCGGCAG
CTGCGGCGGCG---------CGCACCGTGTCGCCGCCGCCCCACGCGACGACGTCCCTCACCGGGCGGCGCGGCGCGGGG
CGGCCGTCGACGGTGTCGGTGCGCGCGGGCGGCGGCGGA---CTGATGGACTTCGTGGGCGGGGACCTGGTGAAGCCGGA
CCTGGGGCGGTGGCTGGACGACGTGGAGGAGCACAAGGCGCTGGCCATCTACCCGCCGCACGAGGGCGGCTACGAGGGCC
GCTACCTCAACCGCCTCCGCTACCAGGGCTACTACTTCCTCGACCTCTCGGCGCGCGGCCTCGGCGACCCCGAGTCCACC
CTCACCAAGATCCACCCCGTCTGCCCGGTCCGTCAGCAGAACCGACGATGATGCATTTCCCTTTCGCCGCCATTAATGCC
GTCTGCTCTGCTTAGCTTAG-CTGACTATGGTGCGCTGCTTGCTTTGCTGCTGCAGCCTAGCCTCGGGAGGCAGCCGGTG
GCGAGGTGGTACTTCCCGCCGGAGGTGGACTACAGGCTCAGCCTGCTGCACCCTGACGCCAAAGGGCTCATCGTCTGGGT
CTACGAAGCCAAGGTCTCTCCCATTCTCTCGCCACTCTCCAACGTTGCCCATCGGCTCTGCTGTTTCTCACCGTT----T
TGGCTTGTTCGTTTCGTCTGCAGGTTCTGTCCAAGGCCGAGCTGCAGTTCCTGGCCATGCTCCCTGACCTCCGCCCCAAA
GTCAGGGTCATCGCGGAATGCGGCAACTGGTACGCACATCAGCCACCACCTGAAATCTCACCCAAATACGTACGTACACC
AGAACC---------------------TGTGAATAACGTTCGAGCCGATTTGATTGATGCAGGAGAAAATTCATCTGGAA
ACCGCTGAAGCAAATATCGGGCCTCGAGCCTGATCCGGACGCCGAGGAATGAGGAGCCACCGTCCGGCAGCTTCCTCGTC
TCATCTCTCGCCTTACACTCTGTTTTCAGCTTTTGTACTAAAGAGGAC----AATGATGTACATACGTATACATTTGACA
TCTGAGCTGGACTCGGTTAATTCCACAAGAGAATCCTCAATCGCGTAACATCTTTCAAACATACACATATCCAACAAATT
AAATCATATATGCAA-GCTCACATGCGTCTCAGG----------------GAGGTCTCGACTTCAGGGTTCAGGTCCACT
GCATAGGTC----------------------GCCAAAATGTTCAGCGCCGTAGGTACACGAGGTCGGTCCTGAGAAGGAA
CGGGTAGCCGATCCCCCTCCTCTTGGAAGGGAACATGACGAAGAGGAGGCTGACGACGAAGCCGACGACGAGGGGCACGG
TGTTCACCACCTTCCTGGGCGCGCCGGGGTAGTAGCACCGGACGATGTCGTGGTGGGAGGCGGCGAAGGTCACAAATGCC
ACCAACGAGAGCGCGGTGTGGAACAGGTCCGACCACCGCAGCCTGTACCTCTCCGGCTCCCTCGGCGCCTTCCTCCGGCT
CCCCCCGCCGGCGCAGAACGTGGCGATACCCGTCGGGGTGGCCACGCCGTAGCGGAGCCGGCCCGTGGCGGAGCGGAAGC
TGTCGGTGAGCGTGAAGAAGACGCAGGAGGCGGCGCAGAGCAGCACGAACGCGCCGGTGAGCACGCGGTTGACGCGCGCG
CACTTGCCGTCGTCGGTCACCAGCGGCGCGAAGATGGCGAAGGTCAGGATGGTGGCCGTCGGGAGGAGCACGTTGAGCCG
GGCCGTGCCGCTGAGGACGAGGTTCATGACCAGGATGAAGCTCGAGGTGTCGTCAGCGTCACCATCGTCTGCGTCTTGGT
GTGGTTCACCGGCGTCTTTGCTGGTCTGATCAATCAGCACCTTGTACTCTTCTCCTTCATGCTCAGCCATTGATGGTGCG
TGTGCAAGCGG--GTGTGAGATTGTTGGGTTTGATGAGACGA--
>chr3D_819
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---------------------------------------AAAATGGAATGTGGAATCCAACAACACCACGGCCAAGCCA-
ACGGATCGCCTTGGGAACGAGCAGCGCCAAGACTTATCCCCTCGCGGTTACCTTCCCGCCACAGGCTGCCGCGGCAACTC
AACCCACACACACGCGCACACTGACACCCAGGCAGCAGCGGCGGCGGCGGCGGAACTGAGCATGTGGTCGGGAGCGGCAG
CCGCGGCGGCGGCGGCGGCGCGCACCGTGTCCCCGCGGCTCCACGCGCCGACGTCCCTCACCGGGCGGCGCGGCGCGGGG
CGGCCGTCGACGGTGTCGGTGCGCGCGGGCGGCGGCGGCGGGCTGATGGACTTCGTGGGCGGCGACCTGGTGAAGCCGGA
CCTGGGGCGGTGGCTGGCCGACGTGGAGGAGCACAAGGCGCTGGCCATCTACCCGCCGCACGAGGGCGGCTACGAGGGCC
GCTACCTCAACCGCCTCCGCTACCAGGGCTACTACTTCCTCGACCTCTCCGCGCGCGGCCTCGGCGACCCCGAGTCCACC
CTCACCAAGATCCACCCCGTCTGCCCGGTCCGTCAGCACAACCGATCGCCGTTCCTCTCCGTTTCACCGCCATGAATGTC
GTCTGCTCTGCTACTTAACAACTGACTTGGGTGCGGTGCC-----TGCTGCTGCAGCCTAGCCTCGGGAGGCAGCCGGTG
GCGAGGTGGTACTTCCCGCCGGAGGTGGACTACAGGCTCAGCCTGCTGCACCCGGACGCCAAAGGGCTCATCGTCTGGGT
CTACGAGGCTAAGGTCTCTCTCAGGCTCTCGCCGCTCTCACACGTTACTCATCGGCTCCGCTGTTTCTCATCGTTGTCTG
TCGTGTGTTCGTTTCGTTTGCAGGTTCTGTCCAAGGCCGAGCTGCAGTTCCTGGCCATGCTCCCTGACCTCCGCCCCAAA
GTCAGGGTCATCGCGGAATGCGGCAACTGGTACA----TCAATCTCCACCTGAACTCTCACTGAATTT---------AAC
AAACCATGACAGACGAGTGTTCTCTCTTGTGAATGACTTTCGAGCCGGATTGATTGATGCAGGAGAAAATTCATCTGGAA
ACCGCTGAAGCAGATATCGGGCCTTGAGCCTGATCCGGACGCCGAGGAATGAGGAGCCACCGTCCGGCGGCTGCCTCGTC
TCATCTCTCGCCTTACACTCCGTTTTCAGCTTTGTACTAAAGCAGGACAATGATGTATGTACATACGTATACATTTGACA
TCTGGG-----CTCGGTTAATTCCACAAGAGAACCATCAATCGTGTAACACCTTTCAAACATACACATCTCCAACAAATC
AAATCATATATGCAAAGCTTACATGCGGCTCCGATACAGACAGAGTCAGAGAGGCCTCGACCTCAGGGTTCAGGTCCACT
ACACAGGTC----------------------GCCAAAATGTTCAGCGCCGTAGGTACACGAGGTCGGTCCGGAGCAGGAA
CGGGTAGCCGATCCCCCTCCTCTTGGAAGGGAACATGACGAAGAGGAGGCTGACGACGAAGCCGACGACGAGGGGCACGG
TGTTCACCACCTTCCTGGGCGCGCCGGGGTAGTAGCACCGGACGATGTCGTGGTGGGAGGCGGCGAAGGTCACGAAGGCC
ACCAGGGACAGCGCGGTGTGGAACAGGTCCGACCACCGCAGCCTGTACCTCTCCGGCTCCCTCGGCGCCTTCCTCCGGCT
CCCCCCGCCGGCGCAGAACGTCGCGATGCCCGCCGGGGTGGCCACGCCGTAGCGGAGCCGGCCCGTGGCGGAGCGGAAGC
TGTCGGTGAGCGTGAAGAAGACGCAGGAGGCGGCGCAGAGCAGCACGAACGCGCCGGTGAGCACGCGGTTGACGCGCGCG
CACTTGCCGTCGTCGGTGACCAGCGGCGCGAAGATGGCGAAGGTCAGGATGGTGGCCGTCGGGAGGAGCACGTTGAGCCG
GGCCGTGCCGCTCAGGACGAGGTTCATGACCAGGATGAAGCTCGAGGTGTCGTCGGCGTCGTCATCGTCGGCGTCTTGGT
GCGGTTCACCGGCGTCTTTGCCGGTCTGATCGATGAGCACCTTGTATTCTTCTCCTCCTTGCTCAGCCATTGGTAGTGCG
TGTGCAGGCGGGTGTGTGAGATTGTTGGGTTTGATGACACGAGA
>SNPs
---------------S-----------------------------------------------------S----------
-----------S----------------------------------SS-------------------S------------
-SS---SS-SS---------------------------------------S-----------------------------
-------SSS--------------------------------------------S-------------S---------S-
-----S-------S--SS---------------------------------S----------------------------
---------SSSSS-------------S------S---S-----------------SSSS-SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---SS-----S------S--------S---SSSS
-------------------------------------------------------SS-SSSS------------------
------------------SSSSSSS-------------------------------S-------S-----SS--------
--S------S---------------------------------------------S-S------S---------------
-----------S------S-S----------S-----------------------------------S-------S---S
-----------SSS----------S-------------------------------------------------------
--------------------------------------------------------S-----------------------
----------------------------------------------------------S-S-------------------
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----------------------------------------S---------------------------------------
---------------------------S---S------------------------------------------------
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------------------S-------------------------------------------S-----------------
-------------S--------------------------------------------------S---------------
--------S-----------------------------------------------------------------------
----S---------------------------------------------------------------------------
-------------------------------------------------------------S----------S------S
SS--------------S---------------------S------S--S-SS-------------S--S-------SS-S
SSSSSS------------------------------------------SS---------S-----S--------------
-----------------------S---------------S------------------SS----S--S------------
-----S-SSSSSSSSSSSSSSSSSSSSSSSS----------------S--S-----------------------------
S-----------------------------------------S-------------------------------------
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------------------------------------------------------------------------SS------
---------------S----------------------------
>forward_494
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--------------------------------------------------------------------------AAAAGG
ACCGAAACCAGGCA------------------------------------------------------------------
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>reverse_2225
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----------------------------------------------------------------TGGATTCAGGTCCACT
GCAC----------------------------------------------------------------------------
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