>input_sequence_65888
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---------------------------------------------ATGAGCTCTCGCAGCAGCAGCGGC---------GG
CGGCGGTGCCTCCCAGATGATGGCCTTCTCGGAGCATTCGCTGCCGAAGCCGATCGCCGGTCACCCGCAGCCGCAGCCGT
CCCCGCCGTCGTCGCCGAGCGAGCGGCCGGCGGCGCGCGGCAGGCGGCGCGCGCAGGAGCCCGGGCGCTTCCTGGGCGTG
CGCCGGCGGCCGTGGGGCCGGTACGCGGCCGAGATACGCGACCCGACCACCAAGGAGCGGCACTGGCTCGGCACCTTCGA
CACGGCGCAGGAGGCCGCCCTGGCCTACGACCGCGCCGCGCTCTCCATGAAGGGCGCGCAGGCGCGCACCAACTTCGTCT
ACGCGCACGCCGCCTACAACAACTACCCGCCCTTCCTCGCGCCGTTCCACGCGCAGCACCAGCCCGCCGCCTACGCCGCG
TCCTCGGCCATGCCGTACGGCGGCCAGCAGCAGCACGCGGGCGCGGGGCCGCCGCACATTGGCAGCTCGTACCACCACGG
CCACGGC---------------TACCACCAGCAGGGCCCGGGCGAGTGT------------TCCATGCCGGTGCCCAGTG
CCGCGGATCACGGCGCCAGCGGCCCGATGGACGTGCGCGGCAGCAGCGGCCACGACTTCCTCTTCCCCAGCGCCGACGAC
AACTCCGGGTACCTGAGCAGCGTGGTGCCGGAGAGCTGCCTCCGGCCCCGCGGCGGCGACCTGCAGGACGCGCGGCGCTA
CTCCGTGTCCGACGCCGACGCCTACGGGCTGGGCCTCCGGGAGGACGTGGACGACCTGGCGACGATGGTGGCCGGCTTCT
GGGGCGGCGCCGACGCGCCGT---------------------ACGGCGGCGGCCACGACATGGTCGCCTCGTCGCAGGGC
TCGGACAACGGCTACTCCCCCTTCAGCTTCCTCTCCCACTGA--------------------------------------
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>chr2A_1_TraesCS2A01G116900
AAGCCATATGGTCAGAGTGTAAAAAAGCACATAATTATGTAGCATTTTGGCATGTATCATAATAGCTAGTGTAGTACTAG
TATCTTGGAGCATAGATTGCAA-TTGTCTCTTTCAAAACAAATAGATTACAATTCTTCAAAAGGCTTGATGCATAGGTAG
GTAAGCTCTCTTCTTTCCCTTCTTTTCTTGTCAGTGGCAGGCATCTTTACACCATCTTATTAGTTTGCAATACTTGGTAC
TCAGTAGTAAATCATCAAAGCATGCAAGGCAGTATGCCCAACTAACATAGATGCCACAACAAGCTATGCATGTAGGCCCA
TTAATAATTATTAAAGTGTTTGTCTTGGCAGGGGCTTCAATCGGCTCTGGCTTCAGAACCAGTGTGTCATATACTCATAT
GCTGGTTGATTAATTTGGAGTGGGCTAGAATCATGACAAAGATAATCATATCTGAAAACGACACTAATTAATACTTATTT
GCAAGGATTGTGGCATGCATAA---TATTCATAAATGAATTGTGTGCATGAAAA--------------------------
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-------------------------------CTAAGAGTAGAACATTCTTACTTCCAAGTGTTATTTTTCTAGCAACACA
TACACA--CACACATATATAGCTATATGTTTGACTGACACAACATT---CTCCTCATCTCTTTGGTCCTAAGATTAGGGC
ACACAAATCCAAACACAAGGTGCATACATACAAACTTGCAGTGAGCTTTCCA---TTCCATTCCCTCCTTTTACTCCTAG
AATTAAACAAGT--------------------------------------------------------------------
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------------------------------------------------------------------------GCAGCGCA
TGCATGTCCCTCCCCTCCTCCCCTACC-----TCGCCATCTCATCCACAGTGCTCTCA--------CTCCTTCTAGCTTC
TCCCTCCTCCGAGCTCCCCATTTAAATACCACCCTGCCTCCCTCCATAGTGAGCACTAC---------ACACTAGAAGCT
CACAGTCTCAGCAACCACCTCCTCAACC---------TAAGCTAGCTAGCTCACACCTCAGAGCTCAAGCTAGGCGGGAG
CAGTAGTATAGTAGCCAGCCAACCTCACTTCACTTC-----TGCCATGAGCTCTCGCAGCAGCAGCGGC---------GG
CGGCGGTGCCTCCCAGATGATGGCCTTCTCGGAGCATTCGCTGCCGAAGCCGATCGCCGGTCACCCGCAGCCGCAGCCGT
CCCCGCCGTCGTCGCCGAGCGAGCGGCCGGCGGCGCGCGGCAGGCGGCGCGCGCAGGAGCCCGGGCGCTTCCTGGGCGTG
CGCCGGCGGCCGTGGGGCCGGTACGCGGCCGAGATACGCGACCCGACCACCAAGGAGCGGCACTGGCTCGGCACCTTCGA
CACGGCGCAGGAGGCCGCCCTGGCCTACGACCGCGCCGCGCTCTCCATGAAGGGCGCGCAGGCGCGCACCAACTTCGTCT
ACGCGCACGCCGCCTACAACAACTACCCGCCCTTCCTCGCGCCGTTCCACGCGCAGCACCAGCCCGCCGCCTACGCCGCG
TCCTCGGCCATGCCGTACGGCGGCCAGCAGCAGCACGCGGGCGCGGGGCCGCCGCACATTGGCAGCTCGTACCACCACGG
CCACGGC---------------TACCACCAGCAGGGCCCGGGCGAGTGT------------TCCATGCCGGTGCCCAGTG
CCGCGGATCACGGCGCCAGCGGCCCGATGGACGTGCGCGGCAGCAGCGGCCACGACTTCCTCTTCCCCAGCGCCGACGAC
AACTCCGGGTACCTGAGCAGCGTGGTGCCGGAGAGCTGCCTCCGGCCCCGCGGCGGCGACCTGCAGGACGCGCGGCGCTA
CTCCGTGTCCGACGCCGACGCCTACGGGCTGGGCCTCCGGGAGGACGTGGACGACCTGGCGACGATGGTGGCCGGCTTCT
GGGGCGGCGCCGACGCGCCGT---------------------ACGGCGGCGGCCACGACATGGTCGCCTCGTCGCAGGGC
TCGGACAACGGCTACTCCCCCTTCAGCTTCCTCTCCCACTGAAACGGACGCGCTGGCATTGC-------TCTTAGCCTCT
TACGTACTCAGTGGTCTGCTGTGCCCACCGTCGGCCATTAGCTAG------GTAGTGTTTGCTTCGTGAGTTCGATCGAT
CGATCAT-----------------AGTAGAAGATCGT--------GAAGAAGAGTGGCTTTGTTGTTTCGGTGCCCTAGC
TTAGCGGATGCTCACATCCATGTACTTAGGTTCTTTCAATTAGCAGCACTATTACTACGTACTA---CTAGTACTAGTAA
GTTTTCATGCATGCACGAGTGACATGCTTAAGTTATCTC---TC--TCTAAAATTATTACAGCCTCTCTCTAATTAGT--
-TAGTCGTGTGGAATTAAAGTGGCGGATCGAGAGTACTCGA----GAGGCCCGGGAATGTAGTACGCACACGCACACTGT
TGTTGATCCTTGAAAGCTTCAGTTTTGGGTTGTAGTTTTGTTTGATTCAGATAGGCCGGCCGGAGGAACATGTCAAAGTA
CGTACTCTCCTACGTACTTA----------------------------------------CCTCAAGGAAGAAGATAAGG
GAAATAGTACACGGACCACGTACTAGACGTAGTACTACCCATTGACAGTTCAACGGAAAGGTAGATGTTCA-GGACAAGT
GTCAAGCAGGCGACCTCCTTTTTTTTCTTGGGTCGCCACTCGCCAGGTACTTGGTGCTGATTCTAGGGTACGTCACGCTC
AGAGCCTCAGACCCATTCATCAGATGATCAGAGGGCCATGCACAAAATGTATCCTCTTCTATGCTGGTGCAGGGCTTATA
TATAAACCCTTTCATTTCCTCCGTAGCTTGCTTGGATTTGTTGGATGGGAAATGTTCTTATTAATCAATAGCAAAAAAAG
GAGAAGATATAAATGTGCATGTAACCATTTGAGTTTATTGGACAATCAAACAAATTCAGTTTTGCCAGATCGCTATATAG
TGCTTGACTTGTACAATATTTCTTATGACATAAATGAGACATGTATTACCATGCACAAAAAGTATATCACACAAAAGAAC
AAGCAATTGGGTTCAA
>chr2D_1
AAGCCATATGGTCAGAGTGTAAAAAAGCACATAATTGTGTAGCATTTTGGCATGTATCATAATAGCTATTGTAGTACTAG
TATCTTGGAGCATAGATTGCAAATTGTCTCTTTCAAAACAAATAGATTACAATTCTTCAAAAGGCTTGATGCATAGGTAG
GCAAGCTCTCTTCTTTCCCTTCTTTTCTTGTCAGTGGCAGGCATCTTTACACCATCTTATTAGTTTGCAATACTTGGTAC
TCAGTAGTAAATCATCAAAGCATGCAAGGCAGTATGCCCAACAAACATAGATGCCACAACAAGCTATACATGTAGGGCCA
TATAATTGAAGA-----GTTTGTCTTGGCAGGGGCTTCAATCGGCTCTGGCTTCACAACTAGTGTGTCATATACTCATAT
GCTGGTTGATTAATTTGGAGTGGACTAGAATCATGACAAAGATAATCATATCTGAAAATGACACTAATTAATACTTAATT
GCAAGGATTGTAGCATGCATAATACTATTCATAAATGAATTGTGTGCATGAAAA--------------------------
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-------------------------------CTAAGAGTAGAACATTCTAACTTCCAAGTGTTA-TTTTCTAGCAACACA
TACACAGACACATATATATAGCTATATGTTTGACTGGCACAACATTCTCCTCCTCATCTCTTTGGTCCTAAGGTTAGGGC
ACACAAATCCAAACACAAGGTGCATACATACAAACATGCAGTGAGCTTTCCA---TTCCATTCCCTCCTTTTACTCCTAG
AATTAAACAAGTGTAC----------------------------------------------------------------
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-----------------------------------------------------------------------TGCAGCGCA
TGCATGTCACTCCCCTCC---CCTATC-----ACGCCATCTCATCCACAGTGCTCTCA--------CTC---CTAGCTTC
TCCCTCCTCCGAGCTCCCCATTTAAATACCACCCTGCCTCCCTCCATAGTGAGCACTACCCACACTACACACTAGAAGCT
CACAGTCTCAGCAACCACCCCCTCAACCTCCTCAACCTAAGCTAGCTAGCTCACACCTCACAGCGCAAGCTAGGCTGGAG
CAGTAGTATAGTAGCCAGCCAGCCTCACTTCACTTCAGTTCTGCCATGAGCATCCGCAGCAGCAGCGGCGGCAGCGGCGG
CGGCCATGCCTCCCAGATGATGGCGTTCTCGGAGCATTCGCTGCCGAAGCCGATCGCCGGCCACCCGCAGCCGCAGCCGT
CCCCGCCGTCGTCTCCGAGCGAGAGGCCGGCGCCGCGTGGCAGGCGGCGCGCGCAGGAGCCCGGGCGCTTCCTGGGCGTG
CGCCGGCGGCCGTGGGGCCGGTACGCGGCGGAGATACGCGACCCGACCACCAAGGAGCGGCACTGGCTCGGCACCTTCGA
CACGGCGCAGGAGGCCGCCCTGGCCTACGACCGCGCCGCGCTCTCCATGAAGGGCGCGCAGGCGCGCACCAACTTCGTCT
ACGCGCACGCCGCCTACAACAACTACCCGCCCTTCCTCGCGCCGTTCCACGCGCAGCAGCAGCCCGCCGCCTACGC---G
TCCTCGACCATGCCGTACGCCGGCCAGCAGCAC------------GCGGCGCCGCACATTGGCAGCTCGTACCACCACGG
CCACGGCCACGGCGGCCTCGGCTACCACCAGCAGGGCCCGGGCGCCGGCGCGGGCGAGTGCTCCATGCCGGTGCCCAATG
CCGCCGATCACGGCGCCAGCAGCCCGATGGACGTGCGCGGCAGCAGCGGCCACGACTTCCTCTTCCCCAGCGCCGACGAC
AACTCCGGGTACCTGAGCAGCGTGGTGCCGGAGAGCTGCCTCCGGCCCCGCGGCGGCGACCTGCAGGACGCGCGGCGCTA
CTCCGTGTCCGACGCCGACGCCTACGGGCTGGGCCTCCGGGAGGACGTGGACGACCTGGCGTCCATGGTGGCCGGCTTCT
GGGGCGGCGCCGACGCGGCGTACGGCGGGTTCGCCCCCGCGAACGGCGGCGGCCACGACATGGTCGCCTCGTCGCAGGGC
TCCGACAACGGCTACTCCCCCTTCAGCTTCCTCTCCCACTGAAACAACAAATGCACCAGCCAGCATTGCT----------
------CTCAGTGCTCTGCTGTGATCACCATCGATCGACCATAGCTAGGTAGTAGTGTTTGTTTGGAGAGTTGGATCGAT
CGATCAGTCACAGTACGTGGCAGCAGTAGAAGGTCGATCGACGAAGAAGAAGAGTGGCTT----GTTTGGGTGCCCTAGC
TTAGCGGATGCTCACATCCATGTACTTAGGCTCTTTCATTTAGCAGCACTATTACTACGTACCAGTACTAGTAAC-----
-TTTTCATGCATGCACGAGTGACATGCTTAAGTTATCTC---TCTCTCTAAACTTATTACAGTCTCTCTCTAATTAGT--
-TAGTCCTGTGGAATTAAAGTGGCGGATCGAGAGTACTCGA----GAGGCTCGAGAATGTAGTACGCAAACGCATACTGT
TGTTGATCCTTGAAAGTTTCAGTTTTGGATTGTAGTTTTGTTGGATTCAGATAGGCCGGCCGGAGGAACATGTCAA-GTA
CGTACTCTCCTACGTACTTA----------------------------------------CCTGAAGGGAGAAGATAAGG
GGAATAGTACACGGACCACGTACTAAT-GTGGTACTACGCCTTGACAGTTCAACGGAAAGGTAGATGTTCACGGACAAGT
GTCAAGCAGGCGACCTCCTTTTTTTTCTTGGG-------TCGCCAGGTACTTGGTGCTGATTCTAGGGTACGTCACGG--
------TCAGACCCATCCATCAGA--------GGGCCATGCACAAAATGTATCCTCTTCTATGCTGGTGCAGGGCTTATA
TATAAACCCTTTCATTTCCTCCGTAGCTTGCTTGGATTTGTTGGATCGGAAATGTTCTTATTAATCAATAGCAATACAGT
ACAGTACAAAATGC--GCATGTAACCATTTGAATTTATTGGACAATCAAACAAA--------------------------
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>chr2B_1
AAGCCATATGGTCAGAGTGTAAAAAAGCACATAATTGTGTAGCATTTTGGCATGTATCATAATAGCTATTGTAGTACTAG
TATCTTGGAGCATAGATTGCAA-TTGTCTCTTTCAAAACAAATAGATTACAATTCTTCAAAAGGCTTGATGCATAGGTAG
GTAAGCTCTCCTCTTTCCCTTCTTTTCCTGTCAGTGGCAGGCATCTTTACACCATCTTATTAGTTTGCAATACTTGGTAC
TCAGTAGTAAATCATCAAAGCATGCAAGGCAGTATGCCCAACTAACATAGATGCCACAACAAGCTATGCATGTAGGACCA
TTAATA---ATTAAAGTGTTTGTCTTGGCAGGGGCTTCAATCGGCTCTGCCTTCACAATCAGTGTGTCATATACTCATAT
GCTGGTTGATTAATTTGGAGTGGACTAGAATCATGACAAAGATAGTCATATCTGAAACTGACACTAATTAATACTTAATT
GCAAGGATTGTAGCATGCATGA---TATTCATAAATGAAGTGTGCATGAAAACTAAGGGCCTGTTTGGTTCCAAATAAGT
CACCAACTTATAAGTCGAAAAGTGAAAAAAGTGACTTATTTTGCCAAACAGACCCGACTTATAAGTCACCCCAACTTATA
AGTCATAAGTTGCTCCACCCCCAACTTAAAACTTATAAGTGACCCTCTTTTGCGTGGGTCCCATCACCTGCATGATGTTG
ATTGGTGTGGAAAGGTGTGTCAGGTGACTTATAAGTCAGGTGACAACCAAACATGCGTGACTTATAAGTCACTGGTTTTA
AGTCAGGTGACTTATTGAAACCAAACAGGCCCTAAGAGTAGAACATTCTAACTTCCAACTGTTATTTTTCTAGCAACACA
TACACA----CACATATATAGCTATATGTTTGACCGGCACAACATTCCCCTCT---TCTCTTTGGTCCTAAGGTTAGGGC
ACACAAATCCAAACACAAGGTGCATACATACAAACTCGCAAACTTGGAGTGAGCTTTCCATTCCCTCCTTTTACTCCTAG
AATTAGGCCCTGTTTGGTTCATAAGTCCTAGGACCTTTTTTAGTCCCAACTTATAAGTCTCAAGTCCCTAAAAAGTCCCT
ACCTGTTTGGTTCCTGGGACTTATAAGTCCATATAAGACCATATTACAACTATAAGTACCTATAAGTCCCTCCTTGAGAG
TCTTATTTCATAAGTCCCAAACGGCCACTTTAAGTCCCTATAAGTTCCTCCTGTTTGGTTTAGATGGGACTTATAGAGAC
TTTTTTAAGTCCCTAAGCCAATAAATCCCTGGAAACAAACACCCTCTTAAACTAAACAAGAGCAGGTGCAATGCAGCGCA
TGCATGTCACTCCCCTCC---CCTACCCAAGGTCGCCATCTCATCCACAGTGCTCTCAGCCTCTCACTCCTTCTAGCTTC
TCCCTCCCCCGAGCTCCCCATTTAAATACCATCCTGCCTCCCTCCATAGTGAG---------CACTACACACTAGAAGCT
CACAGTCTCAGCAACCACC---------TCCTCAACCTAAGCTAGCTAGCTCACACCTCAGAGCTCAAGCTAGGCAGGAG
CAGTAGTGTAGTAGCCAGCCAGCA-----TCACTTCAGTTGTGCCATGAGCTCTCGCAGCAGCAGCGGC---------GG
CGGCCAGGCCTCCCAGATGATGGCCTTCTCGGAGCATTCGCTGCCGAAGCCGATCGCCGGCCACCCGCAGCCGCAGCCGT
CCCCGCCGTCGTCGCCGAGCGAACGGCCGGCGCCTCGCGGCAGGCGGCGCGCGCAGGAGCCCGGGCGCTTCCTGGGCGTG
CGCCGGCGGCCGTGGGGCCGGTACGCGGCCGAGATACGCGACCCGACCACCAAGGAGCGGCACTGGCTCGGCACCTTCGA
CACGGCGCAGGAGGCCGCCCTGGCCTACGACCGTGCCGCGCTCTCCATGAAGGGCGCGCAGGCGCGCACCAACTTCGTCT
ACGCGCACGCCGCCTACAACAACTACCCGCCCTTCCTCGCGCCGTTCCACGCGCAGCAGCAGCCCGCCGCCTACGC---G
TCCTCCACCATGCCGTACGGCGGGCAACAGCG---CGCGGGCGCGGCGGCGCCGCACATTGGCAGCTCGTACCAC-----
-------------GGCCACGGCTACCACCAGCAGGGCCCGGGCGCCGGCGCGGGCGAGTGCTCCATGCCGGTGCTCAATG
CCGCGGATCACGGCGCCAGCAGCCCGATGGACGTGCGCGGCAGCGGCGGCCACGACATCCTCTTCCCCAGCGCCGACGAC
AACTCCGGGTACCTGAGCAGCGTGGTGCCGGAGAGCTGCCTCCGGCCCCGCGGCGGCGACCTGCAGGACGCGCGGCGCTA
CTCCGTGTCCGACGCCGACGCCTACGGGCTGGGCCTCCGGGAGGACGTGGACGACCTGGCGTTGATGGTGGCCGGCTTCT
GGGGCGGCGCCGACGCGGCGTACGGCGGGTTCGCCCCCGCGAACGGCGGCGGCCACGACATGGTCGCCTCGTCGCAGGGC
TCCGACAACGGCTACTCCCCCTTCAGCTTCCTCTCACACTGAAG---CAAATGCACCGGCATTGCTCGATCTTAGCCTCT
TACGTACTCAGTGGTCTGCTGTGCCCA--GTCGGCCGTTAGCTAG------GTAGTGTTTGCTTCGTGAGTTCGATCGAT
CGATCAT-----------------AGTAGAAGATCGT--------GAAGAAGAGTGGCTT----GTTTCGGTGCCCTAGC
TTAGCGGATGCTCACATCCATGTACTTAGGCTCTTTCAATTAGCAGCACTATTACTACGTACTACTACTAGTAGTAGTAA
GTTTTCATGCATGCACGAGTGACATGCTTACTTTTTACTGTATCTCTCTAAGCATATTACAGTCTCTCTCTAATTAGTTA
GTAGTCCTGCGGAATTAAAGTGGCGGATCGAGAGTACTCGATCGAGAGGCTCGAGAATGTAGTACGCA------------
-------CCTTGAAAGTTTCAGTTTTGGATTGTAGTTTTGTTGGATTCAGTTTT-------GGAGGAACATGTCAA-GTA
CGTACTCTCCTACGTACTTATACTCTTTTTTTTTTTTTGCATCGAACGTACTTATACTTACCTGAAGGAAGAAGATAAGG
GGAATAGTACACGGACCACGTACAAGACGTAGTACTGCGCCTTGACAGTTCAACGGAAAGGTACATGTTCACGGACAAGT
GTCAAGCAGGCCACCTCCTTTTTT-TCTTGGG-------TCGCCAGGTACTTGGTGCTGATTCTAGGGTACGTCACG---
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>SNPs
------------------------------------S-------------------------------S-----------
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----------------------------------------------------------------------------S---
------SSS----------------------------------------------S------------------------
-----------------------S----------------------------------S------------------S--
-----------S--------------------------------------------------------------------
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-------------------------------------------------S------------------------------
------------------------------------S-----------------------------------S-------
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--------S---------SSS-----------------------------------------------------------
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-------------------S-------------------------------------------------------S----
---------------------S----------------------------------------------------------
----SS------------------------------------------------------S-------------------
--------------------------------S-----------------------------------------------
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----------------------------------------------------------S-----------------SSS-
------S-------------------------SSS-----------S-S-------------------------------
--------------------------------------------SSS-S----------------------------S--
--------------------S-----------------------------------------------------------
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-------------------------------------------------------------S------------------
-----------------S--------------------------------------------------------------
--S------------------------------------------SSSSSSSSSSS--SSSS------------------
------------------------------------S-------------------------------------------
------------------------------------------------------------SSSS----------------
------------------------------S------------------------------------------S------
----------------------------------------------------S---------S-----------------
------S-------------------------------------------S--S--------------S-----S-----
----------------S-----------S-------------S---------------------------------S---
---------------------------------------------------------------S----------------
-S------------------------------------S-S---------------------------------------
--------------------------------SSSSSSS--------------------------------------SSS
SSSSSS----------S-------SSSSSSSS------------------------------------------------
----------------------------------------------S---------------------------S-S-SS
SSSSSSSS-S-SSSSS----------------S---------------------SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS
>forward_1540
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CACAGTCTCAGCAACCACCT------------------------------------------------------------
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>reverse_3387
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--------------------------ATCAGAGGGCCATGCACAAA----------------------------------
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