>input_sequence_65881
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-----------------------------------------------ATGGAGGTGTTCGACGAAGTGCACTTCGTGCGG
CTCCGGTGCCGGGTGCGGCGGACCAAGTACCTGGCGGCGGACGACGACGGGCACGGCGTGTGCCTGTCCAGCCAGCGCGG
CGCGCACAACACGGTGTGGGCGGTGCAGGCCATGGAGGGCGCGGTGGAGGGCGCCGAGGGCGGGCCCTTCGTCCTCCTCC
GCGGCGCCTATGGCCGCTACCTCTTCGCCACGGATGTGCAGGCCGCCACGGGGCCCGGCCACGGCGTCCAGGCCGCGCAG
CAGGCCCGGCCGCACCCGAACACGCCGAGGTGCATGCTCTGGCAGGCCATCCGGCGGCAGGGCTCCTTCGTGATCCGCAG
CGCCGGGGGCCGGTACCTCCGCGCCAACGGCAAGTACGTCCGGTGGCGCACGGCCGTCACCGTCGCCGGGGACGACGCCA
GCGCCATGCTGCAGTGGGACGTCGAGGTCGTGCCCCTTCGCCTGGACCGCCCTACCCTCCTCGATCCACCGCCACAGGTT
CTCATTGCCCCGGCGATTCCCGCATTGTATATTTGCATGGCGATTGATCGTG--------ATCGATCGGTTCCATCCGAC
GTGCAGCCGATGCGGAGGCGGCGCCGCCCGCCGACGGAGGAGGAGGTGGCGCGGCAGGTCCGGTACATCCGCGCCGGCGT
GGACGGGGACATAGACGAGACAGGGTGGCGGACGGTGCGGATCAGCACCAACAGCCTCATGCAGCTGCGGCTGACGCTGG
CCAACCTGCTGGGCCAGAACCGGTCGGCGCTCCACACCACGCTCTGCGTCCGCGCCGGTGCCTACGCCGACCTCTCCCCT
CTCCTCATCGACCTGCCCATCGGCAACGACCGCCTCGACATCGTCGTCATCACCCACGGCACACCAGGTCCGTAA-----
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>chr1A_1_TraesCS1A01G044700
GCGCCTTCAACTCGTTTCAACTCTTGTAGTCGTCGCTAAGTGGTCTATGACACTGGACATAATTTTTATTATTTCTGGTG
TTCGTCATACTGCCATGATTGGTGATGAGTATATCAAAAGTCTTTCCAC---ACAAAAAAACCGATTAAAGAAAAAAAAC
ATGCACGGTATCATGG--TTGCTACCTAGA--AAAAAAACACAAAATGACAACTATTCTATGCATTGTTCTTGGATGAAT
TTTCGTAGGTGACGATAGCCCACCTTATTCATCATCTCTTTTTTTTTGAGCTGCCTTAGTCATCATCTTTAATTTGCCGC
GAAATGTTTAAACAAGTGACATGCAGGTGTTGGATGTCGTGTAGCTCAAGCTACGTGGTACCCCTTATCTTAGCCATTCA
TTTTTGCATCATGATCCGTGCAGGCATATTTGTCATTTTTGTTTCTCTCAAACGAAACAACGTATAAACTTCAAACTTTG
CAGGACAACAAAACATTCTAATTACTATGTGGGCAAAAACTTCAGATTTTTTCATGCATTTTAAATGCTAAAATTTATTT
TTTTAATAAAAAAAATCCTCATTTTGTATATTTATGTTGGTCCAAAAAATCTGAAAGTTTTTTCACACATTGAAGTTGTA
AATTTTGTTTGATCTGCAAAGTTTGAAGTTTATATGTTTTTTCATTTGAGAGAAACAAAAAAGAGAAATCTTCTTGCTGT
AAGTTAGTTGAAGAGTACGGATCTCAAAGCAATGTTGAAGGGGTGGAGATAAGAAGTTTCATGTAGCCTAAGCCAGAGAA
ACTTTACCGTGTTGGATAACTCCAGTGAGGTACTCCTACGTGGTACGCCCGCTTCAAACACACTCCCGCTGTGGAGCGCA
CGCGGCCACCCGTAACCATGCATCTGAACAAACTAATTCTCATGTCTCCCTCCTCGAGGAACCAAGAAACCCAGCCTCGA
TCCAGTCTCCCCGCATCCATCGCTCTCCGGATCGACCGATCCGGCCGATGGAGGTGTTCGACGAAGTGCACTTCGTGCGG
CTCCGGTGCCGGGTGCGGCGGACCAAGTACCTGGCGGCGGACGACGACGGGCACGGCGTGTGCCTGTCCAGCCAGCGCGG
CGCGCACAACACGGTGTGGGCGGTGCAGGCCATGGAGGGCGCGGTGGAGGGCGCCGAGGGCGGGCCCTTCGTCCTCCTCC
GCGGCGCCTATGGCCGCTACCTCTTCGCCACGGATGTGCAGGCCGCCACGGGGCCCGGCCACGGCGTCCAGGCCGCGCAG
CAGGCCCGGCCGCACCCGAACACGCCGAGGTGCATGCTCTGGCAGGCCATCCGGCGGCAGGGCTCCTTCGTGATCCGCAG
CGCCGGGGGCCGGTACCTCCGCGCCAACGGCAAGTACGTCCGGTGGCGCACGGCCGTCACCGTCGCCGGGGACGACGCCA
GCGCCATGCTGCAGTGGGACGTCGAGGTCGTGCCCCTTCGCCTGGACCGCCCTACCCTCCTCGATCCACCGCCACAGGTT
CTCATTGCCCCGGCGATTCCCGCATTGTATATTTGCATGGCGATTGATCGTG--------ATCGATCGGTTCCATCCGAC
GTGCAGCCGATGCGGAGGCGGCGCCGCCCGCCGACGGAGGAGGAGGTGGCGCGGCAGGTCCGGTACATCCGCGCCGGCGT
GGACGGGGACATAGACGAGACAGGGTGGCGGACGGTGCGGATCAGCACCAACAGCCTCATGCAGCTGCGGCTGACGCTGG
CCAACCTGCTGGGCCAGAACCGGTCGGCGCTCCACACCACGCTCTGCGTCCGCGCCGGTGCCTACGCCGACCTCTCCCCT
CTCCTCATCGACCTGCCCATCGGCAACGACCGCCTCGACATCGTCGTCATCACCCACGGCACACCAGGTCCGTAAGAATT
CTTCACTGTCCTCACCAAGCACTCATAGATAAGATAACCAATTGTCAGGACTGACTACTCGATGTTGATGGAATTTCAGT
GGACAACACGTTGGTGTACCCAAACGTCAATGCGCGGAATTGAACATCATGCAGGGGTGAAGCGACATGGTTTGGGGTTC
ATGCTCGATTCTCTCACCGCT---------ATCAAGTGGTTGGGTTTTTCTCGTTCGTTTTTGCTCAGAGAGTAGCTTA-
---TCCTGGAGCAACTGCTAGTGTACATCGGACTGTCAGAGCTGTTGGCGGGGAGAATGCTTGTAGAACAGGGTA----G
TACGTCGTTTTGACACTCAGTAGTA-GTTGCTCAAGATGCTGAATAGACAGTGATCTACCTTGTGATTTTGCTCTCATCT
----TTAGCATCTGGCTGGTGGTCTGTAACGATTTTTGGGTACAATGCTGCTACATGGAAATAGTAGTATTTGATATGA-
TACTGTCCAGAAATACATAGAGATCCGTTTAAATGGTCTTTTATGGGAAACACAGTTGTAGTTCCTTCCTACTGTGTATA
T----TAAATGTTCATGTGTAGGAGGAGCAAGGGGTCTACCCCGGTGAAAATCAGGGG-CTGAGATAATTAGTTTG-AAA
ATTAAGTAAAAGTAATTACATAAGGGCTGAGATAATTAAAGGAGGATATACCCCCGCTCTCTGCATCTGGGCGATGTATA
CAACCAGTTTATTAATTATTAATAAGAGCATCTTTAGCAGACCCCGCATCCCGCCGACCCATAAAACGCATTTGCAGTTC
GCGGAAAAAGGTTTTGCAGGTCGGCGTAGACGGCCGCAGAGGTAGACCCGGCAAAACGGACGCGTATAAAAGGATATTCG
TGGAATATGCTCTTTTACAGGTTAGTTTTAGCTGCGGTAGAATAGACCCCTCAAACTTAAGCTGTAAAACGAAATATTCA
CTTATATTCTTTCCTCACGTTTTCTTCTTTCTCTCATCCATGTCCATGGTCAGTTAGCTTGCTC
>chrUn_2
-CGCCTTCGGCTCGCTTCAGCTCTTGTAGTCGTCGCTAGGTGGTCTATGACACTGGATATAATTTTTGTTATTTCTGGTG
TTCGTTGCACTGCCATGATTTGAGATGAGTAGATCAGAAATTCTTTCGCAAAACACAAAATCCGGTTAAAGAAAAAAAAA
CATGCACGTGTCATGGTTTTGCTTCCTAGAGAAAAAAAGCACAAAATGACAACTATTCTATGCTCTGTTCTTGGATGAAT
TTTCGTAGGTGACGATAGCCCACCTTATTCATT-------------------------------ATCTTTAATTTGCCTC
GAAATGTTTAAACAAGTGACATGCAG------------------------------------------------------
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--------GTGTTGGATAACTCTAGTGAGGTACTCCTACGTGGTACGCCCGCTTCAAACACACTCCCGCTGTGGCGCGCA
CGCGGCCACCCGTAAACATGCATGTCAACCAACTAATTCTCATGTCTCCTTCCTCGAGGAACCAAGAAACCCAGCCCCGA
TCCAGTCTCCCCGCATCCATCGCTCTCCGGATCGACCGATCCGGCCGATGGAGGTGTTCGACGAAGTGCACTTCGTGCGG
CTCCGGTGCCGGGTGCGGCGGACCAAGTACATGGCGGCGGACGACGACGGGCACGGCGTGTGCCTGTCCAGCCAGCGCGG
CGCGCACAACACGGTGTGGGCGGTGCAGCCCATGGAGGGCGCGGTGGAGGGCGCCGAGGGCGGGCCCTTCGTCCTCCTCC
GCGGCGCCTACGGCCGCTACCTCTTCGCCACGGACGTGCAGGCCGCCACGGGGCCCGGCCACGGCGTCCAGGCCGCGCAG
CAGGCCCGGCCGCACCCGAACACGCCGAGGTGCATGCTCTGGCAGGCCATCCGGCGGGAGGGCTCCTTCGTCATCCGCAG
CGCCGGGGGCCGGTACCTCCGTGCCAACGGCAAGTACGTCCGGTGGCGCACGGCCGTCACCGTCGCCGGCGACGACGCCA
GCGCCATGCTGCAGTGGGACGTCGAGGTCGTGCCCCTTCGCCTGGACCGCCCTACCCTCCTCGATCCACCGCCACAGGTT
CTCATTGCCCCCGCGATTCCCGCATTGTATATTTGCATGGCGATTGATCGTGAATTCGTGATCGATCGGTTCCATTCGAC
GTGCAGCCGATGCGGAGGCGGCGCCGCCCGCCGACGGAGGAGGAGGTGGCGCGGCAGGTCCGGTACATCCGCGCCGGCCT
GGACGGGGAGATAGACGAGACAGGGTGGAGGACGGTGCGGATCAGCACCAACAGCCTCATGCAGCTGCGGCTGACGCTGG
CCAACCTGCTGGGCCAGAACCGATCGGCGCTCCACACCACGCTCTGCGTCCGCGCCGGCGCCTACGCCGAGCTCTCCCCT
CTCCTCATCGACCTGCCCATCGGCAACGACCGCCTCGACATCGTCGTCATCACCCATGGCACACCAGGTCCGTAACAATA
CTTCAGCCTC---ATCGAGCGCTCATAGATAATCTCACCAATTGTCAGGACTGACTACTCGATGTTGATGGAATTTCAGT
GGACAACACGTTGCTGTACCCAAACGTCAATGCGCGGAATTGAACATCATGCAGGGGTGAAGCGACATGGTTAGGGGTTC
ATGCTCAATTCTCTCACCGCTACCTGGATTATCAAGTGGTTTGGTTTCTCTCATTCGTTTCGGCTCGGAGAGTAGCTTA-
---TCCTGGAGCAACTGCTAGTGTACATCGGACTGTCAGAGCTGTTGGCGGGGAGAATGCTTGTAGAACAGGGTA----G
TACGTGGTTTTGACACTCAGTAGTAAGTTGCTCAAGACGCTGAATAGACAGTGATCTGCCTTGTGATTTTGCTCTGATCT
TTAATTAGCATCTGGCTGGTGGTCTGTAACGATTTTTGGGTACAATGCTGCTACATGGAAATAGTAGAATTTGATATGAA
TACTGTCCAGAAATACATAGAGATCCGTTTAAATGGTCTTTTATGGGAAAGAAACTTGTAGTTCCTTCCTACTGTGTATA
T----TAAATGTTCATGTGTAAGAGGAGCAAGGGGTCTACCCCGGTGAAAATCAGGGGGCTGAGATAATTAGTTTGGAAG
ATTAAGTAAA----------------------------------------------------------------------
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>chr1D_254
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--------------------CACCTTATTCATCATCTTCTTTGTTTTGAGCTGCCTTATTCATCATCTTTAATTTGCCGC
GAAATGTTTAAACAAGTGACATGCAG------------------------------------------------------
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--------GTCTTGGATAACTCCGGTGAGGTACTCCTACGTGGTACGCCCGCTTCAAACACACTCCCGCTGTGGCGCGCA
GGCGGCCACCCGTAACCATGCATCTCAACCAACTAATTCTCATGTCTCCCTCCTCGACGAACCAAGAAACCCAGCCCCGA
TCCAGTCTCCCCGCATCCATCGCTCTCCGGATCGACCGATCCGGCCGATGGAGGTGTTCGACGAAGTGCACTTCGTGCGG
CTCCGGTGCCAGGTGCGGCGGACCAAGTACATGGCGGCGGACGACGACGGGCACGGCGTGTGCCTGTCCAGCCAGCGCGG
CGCGCACAACACGGTGTGGGCGGTGCAGCCCATGGAGGGCGCGG------------AGGGCGGGCCCTTCGTCCTCCTCC
GCGGCGCCTACGGCCGCTACCTCTTCGCCACGGACGTGCAGGCCGCCACGGGGCCCGGCCACGGCGTGCAGGCCGCGCAG
CAGGCCCGGCCGCACCCGAACACGCCGAGGTGCATGCTCTGGCAGGCCATCCGGCGGGAGGGCTCCTTCGTCATCCGCAG
CGCCGGGGGCCGGTACCTCCGCGCCAACGGCAAGTACGTCCGGTGGCGCACGGCCGTCACCGTCGCCGGGGACGACGCCA
GCGCCATGCTGCAGTGGGACGTCGAGGTCGTGCCCCTTCGCCTGGACCGCCCTACCCTCCTCGATCCACCGCCACAGGT-
-TCATTGCCCCCGCGATTCCCGCATTGTATATTTGCATGGCGATTGATCGTGAATTCGTGATCGATCGGTTCCATTCGAC
GTGCAGCCGATGCGGAGGCGGCGCCGCCCGCCGACGGAGGAGGAGGTGGCGCGGCAGGTCCGGTACATCCCCGCCGGCGT
GGACGGGGACATAGACGAGACAGGGTGGCGGACGGTGCGGATCAGCACCAACAGCCTCATGCAGCTGCGCCTGACGCTGG
CCAACCTGCTGGGCCAGAACCGGTCGGCGCTCCACACCACGCTCTGCGTCCGCGCCGGCGCCTACGCCGACCTCTCCCCT
CTCCTCATCGACCTGCCCATCGGCAACGACCGCCTCGACATCGTCGTCATCACCCACGGCACACCAGGTCCGTAACAATA
CTTCAGCCTCCTCATCGAGCGGTCATAGATAATCTCACCAATTGTCAGGACTGAGTACTCGACGTTGATGGAATTTCAGT
GGACAACACGTTGCTGTACCCAAACGTCAATGCGCGGAATTGAACATCATGCAGGGGTGAGGCGACATGGTTAGGGGTTC
ATGCTCGATTCTCTCACCACTACCTGGATTATCAAGTGGTTGGGTTTCTCTCATTCGTTTCGGCTCAGAGAGTAGCTTAA
TTATCCTGGAGCAACTGCTAGTGTACATCGGACTGTCAGAGCTGTTGGCGGGGAGAATGCTTGTAGAGCAGGGTAGTACG
TACGTGGTTTTGACACTCAGTAGTA-GTTGCTCAAGACGCT--------AGTGATCTGCCTTGTGATTTTGCTCTGGTCT
TT----AGCATCTGGCTGGAGGTTTGTAACGATTTTTGGGTACAATGCTGCTACATGGAAA-AGTAGTATTTGATATGAA
TACTGTCCAGAAATACATAGAGATCCGTTTAAATAGTCTTTTATGGGAG--ACAGTAGAAATTTCTTCCTACTGTGTATA
TTTTATAAATGTTCATGTGTAGAAGTACAAG-------------------------------------------------
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>SNPs
S-------SS----S----S------------------S------------------S---------S------------
-----SSS------------S-S--------S----S--S-SS--S-S-------S----S---S--------------S
SSSSSSS--S-------------S--------------S------------------------SS---------------
-------------------------------------SS---S---------------S---------------------
--------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS------------------------------------------------------------------S-----
-------------------------S---S----------------------------------------------S---
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------------------------------S-------------------------------------------------
----------------------------S---------------------------------------------------
----------S-----------------------S---------------------------------------------
---------------------------------------------------------S-------------S--------
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-----------S---------------------------------------------------------------S----
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----------------------------------------------------------S---------------------
---------------------------------------------------------------------------S---S
-----SSS------S-S---S-----------SS-S--------------------------------------------
-------------S----------------------------------------------------------S-------
-----------------------------------------------S----S-------SS------------------
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-----S-------------------------------S-------------------S-----------------S----
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--------------------------------------------------S-----------------------------
-------------------------------------------------------------------------------S
----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_360
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--------------------ATGCAGGTGTTGGATGTCGT----------------------------------------
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>reverse_2073
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------------------------------------------------------------------------TGGGGTTC
ATGCTCGATTCT--------------------------------------------------------------------
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