>input_sequence_65876
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-------------------------------------------------------------------ATGGAGATGATTC
ACAAGGGATCCATGGACTTTGTGCTGGTCCCTTGCGGGCTTGCGATCATGCTCGGCTACCACCTCCTCCTCCTCTACCGC
ATCCTTCGCCATCCGCACACCACCGTCATCGGCTACGAGAACCACAACAAGCTCGCCTGGGTGCAGCGCATGGTGCAGGT
GGAGGATACGTGCTCACTCCTCTTGTTGTTGATCGATCCTGTTTCCTTCTTTTCTTTTCTGCGATCGGTGCCGGTTCTTC
TGGCTGATCGCCGCGGTTCATGCCTGCCCGCAGACGACGGCGCCGGAGGAGGCGGCCCTGGCGCTGAGCGTGATCTCCGA
CAGCATCTCGGCGTCCACCACGCTGGCGTCGCTCTGCATCGCGCTGGGCTCGCTGATCGGCGCGTGGGTGAGCAGCAGCG
CCGCGCCCTCGGAGCCGCTCACGGCCGGCGGCGACGGCGGTGCCGGCCAGCCGACGACGACGGGGATGGCGTCGGCCAAG
TTCACGTCGCTGCTCGTCTGCTTCCTGGCCTCCTTCGCCTGCTTCATCCAGTCCGCGGGGCACTACGTGCACGCCAGCTT
CCTCATGACCGCGCTGGGGTCGGACGCGCCGGCGAGCCACGTGCAGCGCGCCGTGATCCGGGGCGGCAACTTCTGGGCGC
TGGGGCTCCGGGCGCTCTACTTCGCCACGGCGCTGCTCATGTGGGTGTTCGGCCCGGTGGCCATGCTCGCCTGCTCCGTG
CTCACGGTGGTCGTGCTCCACCTGCTCGACACCAGCTCCATGCCGCTGCACCACCACCAGTTCCTGGACAGAACGAGCGG
CACTGGGGGAACCAGAGCGGCCAGCGCTCCGAACCCGGGGCTCCATAGCGCGGTCGCGGTGTTCTCGCCGGTGCCGTATC
TCAGGTGA------------------------------------------------------------------------
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---------------------------------------------------------------------
>chr5A_1_TraesCS5A01G184000
GTGGTGCTGATGGTGCTCAGGATGGAATCACTGCTATCTCTGCTATGTTAATCCAGTTTAAAGATTATGTGGTACTATTA
TGATGTTAGCCTGTTTGCATTGCTATGTTTATGGTTATGCACTTATGCTTATCCTATGGTTTAGCTTATGTTTATGGTTT
ATGCTATGATTATGGTTAC-GCTATGTATGCTGCTCCGGTGTGCCCGTGTACTTGTAACCTCACCACTCCTAGAAGAGGT
TACCACATCATTTGAGTTGTATGTAACCAAACAACAGCTCTTTGCATCTCGATAGAACATGCAGACAATCAAACACAGGT
TCCGGTGTTTCTGCTCAGGCAGATTGGAGGGCATGCATGCAAACAAACAACGTGCAAAACTTATTTTTTGACGTGTATTC
ACTCAGCCAGGCTGAGTTGGGCTGCAGATGCGAAGTGCCCAAAATAGGTACAGGTAACCAAACACACCTTGTTTGACCTG
GCTTGTGGATAT------------------------ATATACGCATGTTCCTTAAGAACGGATTGTTCCGTGTCATCCTT
GAGTGCAAGCAAACACCTCTCACTTGAGTGCAGGCCGTGCTGATAGCTTGTCGGATTCAGGTTTCAAAATAACAAAAATG
GCCATTATTTCTCAAGTTTATCTCCAGGTATTTCTTTGAAGCAACCTATACTTCTTCTGAAGAAGGAAAAAATACGTACA
GACGAGATGATGCGTCTTCCCACTCTTGCAACCAAAAACACATTTGGTTCATTTAATTAGCTGGAAATCCGCAAGCAACC
GGCGAATTGAAAGCGAGCGTGCATGCATTATTGCT--ACAATTTGGCAGGTATCACACACAACCCTAATCAAATGGCAAG
TACAATTAGTCGTACAATCTCGTGCCATCATCATGGATATATTCAGATTTTTATAAGCAAGAGAAATGTGCATGCCAAAG
AAGGATCACAATTCACAAGACTAGAAGAGAAGAGAGAAGAACACGTACACATGCTGACCGCTAGGCGATGGAGATGATTC
ACAAGGGATCCATGGACTTTGTGCTGGTCCCTTGCGGGCTTGCGATCATGCTCGGCTACCACCTCCTCCTCCTCTACCGC
ATCCTTCGCCATCCGCACACCACCGTCATCGGCTACGAGAACCACAACAAGCTCGCCTGGGTGCAGCGCATGGTGCAGGT
GGAGGATACGTGCTCACTCCTCTTGTTGTTGATCGATCCTGTTTCCTTCTTTTCTTTTCTGCGATCGGTGCCGGTTCTTC
TGGCTGATCGCCGCGGTTCATGCCTGCCCGCAGACGACGGCGCCGGAGGAGGCGGCCCTGGCGCTGAGCGTGATCTCCGA
CAGCATCTCGGCGTCCACCACGCTGGCGTCGCTCTGCATCGCGCTGGGCTCGCTGATCGGCGCGTGGGTGAGCAGCAGCG
CCGCGCCCTCGGAGCCGCTCACGGCCGGCGGCGACGGCGGTGCCGGCCAGCCGACGACGACGGGGATGGCGTCGGCCAAG
TTCACGTCGCTGCTCGTCTGCTTCCTGGCCTCCTTCGCCTGCTTCATCCAGTCCGCGGGGCACTACGTGCACGCCAGCTT
CCTCATGACCGCGCTGGGGTCGGACGCGCCGGCGAGCCACGTGCAGCGCGCCGTGATCCGGGGCGGCAACTTCTGGGCGC
TGGGGCTCCGGGCGCTCTACTTCGCCACGGCGCTGCTCATGTGGGTGTTCGGCCCGGTGGCCATGCTCGCCTGCTCCGTG
CTCACGGTGGTCGTGCTCCACCTGCTCGACACCAGCTCCATGCCGCTGCACCACCACCAGTTCCTGGACAGAACGAGCGG
CACTGGGGGAACCAGAGCGGCCAGCGCTCCGAACCCGGGGCTCCATAGCGCGGTCGCGGTGTTCTCGCCGGTGCCGTATC
TCAGGTGACGGAGGAGAAAGTTTCTGGTGTATGATGTTCGAAGATTTTTTTAAAAAAAGGTTAAAC-CACCGGCCCTCTG
CATCAATTGATGCATGCAATCATCTT-ATTAATTATTTCACAAAGGTTAAATAAGAATATACATCAATTCACCTGAAGCC
ATCACTCACACCTATAAACTCA-------GGAATACTCTTACTT-CCCATATTTAAAATCGGTATCGTCGCCGATCCATC
CACATAATATATCAGGACCAACAGCCGGTGCAGCCTACCTAAAGCGCACATCACATGCTCACGTTTTAGAAGCCGCCATC
ATCATCGGACCACTGACCCGTCTTCAGGAGAGATATCCGCATCGTCC-TTGCCAG-TCTGGACATCCGTCGACGCCACCA
TGGCGCCCAACAGCGCCACCGCCTTGCGCTCATCCGCCCAGACGTGAAAACTCTGTAAGATCTGTCGTGCGTAGCACCTG
CCAATCAGGCATGACTCAGC----GTAGCACCTGTTGGCCAGGCATGACTTGACAGCTCCACCGAAGCTCCGTGCAAGAC
AAAGCCACTCCACCTCCTGCCTCTGTCTTTCAGCGCTGCTCCATAAATGATGCTCACAAGAGAGAAA-CGACACTGTAAT
ACCGCCATCGTTCGATCTGGAAGACCAGATCCTAGGGTTTCCGCCGAAGCAGCACGAGTGGGTCGACAACACTTACACGA
TGATGCCTTCATCAAGGTAACGATGC-AAAACGCCGTCATTGCCCGCCAACGACTCGGTTTTCACCGGCAGCTA-TGTCT
CCCCGACTCATAACCGAGACTAGATGACGAATCTCGAGATCCGACCACCCAGCCGCAGGCCGATCACCTCTG-CGGAAGA
GATGACCACCACCGTCGACTGCACCGGTCAAAGCAGA-TCTAACCGGAGATGCTGTCGACACGACCACCAGACCCTCCAC
GCCACCGCTGCCGATCCAAAGGCAGATGGCGCGCCGTCGCCACCGTCGCCCAAACAGGGCTGGCCGCCA
>chr5D_1
GTGGTGCTGATGGTGCTCAGGATGGGATCACTGCTATCTTTGCTATGTTAATCCAGTTTGAAGAC--TGTGGTACTATTG
TGATGTTAGCCTGTTTGAACTAC------TATGGTTATGCATTTATGCTTATCCTATGGTTTAGCTTATGGTTATGGTTT
ATGCTATGATTATGGTTACCGCTATGTATGCTGCTGCTGTGTGCCCATGTATTGGTAACCTCACCACTCCTAGAAGAGGT
TACTACATCATTTGAGTTGTATGTAACCAAACAGCAGCTCTTTGCATCTCGGTAGAATATGCAGGCAACCAAACACAGGT
TCCGGTGTTGCTGCTCGGGCAGATTGAAGAGCTTGCAGACAAACAAACAATATGCAAAACTTAATTTTTGACCTGTATTC
ACTTAGCCAGACTGAGTTGGGCTACAGATGCAAAGTGCCCAAGATAGGTGCAGGTAACCAAACACACCTTGTTCCACTTG
GCTTGTGGTTCACCTAAAAAAAAACTTGGCTTGTGGATGTACGCATGTTCCTTAAGAACGGATTGTTCTGTGTAATCCTT
GAGTGCAAGCAAACGCCTCTCACTTGAGTGCAGGCCGTGCTGATAGCTTGTCGGATTCAGGTTTCAAAATAACAAAAATG
GCCATTATTTCTCAAGTTTATTTCCAGGTATTTCTTTGAAGCAACCTGTAC-----------------------------
-----------------------------------AAACACATTTGTTTCATTTAATTAGCTGGAAATCCGCAAGCAACC
GGCGAATTGAAAGCGAGCGTGCGTGCATTATTACAACACAATTTGGCAGGGATCACACACAACCCTAAGCAAATGG-AAG
TACAATTAGTTGTACAATCTCGTGCCATCATCATGGATAAAATCAGATTTTTATAAGCAAGAGAAATGTGCATGCCAAAG
AGGGA-------TCACAAGACTAGAAGAGAAGAGAGAAGAACACGTACACATGCTGACCGCTAGGCGATGGAGATGATTC
ACAAGGGATCCTTGGACTTGGTGCTGGTCCCTTGTGGGCTTGCGATCATGCTCGGCTACCACCTCCTCCTCCTCTACCGC
ATCCTTCGCCATCCGCACACCACGGTCATCGGCTACGAGAACCACAACAAGCTCGCCTGGGTACAACGCATGGTGCAGGT
GGAGGAT------------CTCTTGTTGTTGATCCTGTTTAAT-----TTTTTCTTTTCTGTGATCAGTGCTGGTTCTTC
TGGCTGATAGCCGCGGTTCATGCCTGCCCGCAGACGACGGCGCCGGAGGAGGCGGCCCTGGCGCTGAGCGTGATCTCCGA
CAGCATCTCGGCGTCCACCACGCTGGCGTCGCTCTGCATCGCGCTGGGCTCGCTGATCGGCGCGTGGGTGAGCAGCAACG
CCTCGCCCTCGGCGCCGCTCACGGCCGGCGGCGACGGCGGCGCCAGCCAGCCGGCGACGACGGGGATGGCGTCGGCCAAG
TTCACGTCGCTCCTCGTCTGCTTCCTGGCCTCCTTCGCCTGCTTCATCCAGTCCGCGGGGCACTACGTGCACGCCAGCTT
CCTCATGTCCGCGCTGGGGTTGGACGCGCCGGCGAGCCACGTGCAGCGCGCGGTGATCCTGGGCGGCAACTTCTGGGCGC
TGGGGCTCCGGGCGCTCTACTTCGCCACGGCGCTGCTCATGTGGGTGTTCGGCCCGGTGGCCATGCTCGCCTGCTCCGTG
CTCACGGTGGCCGTGCTGCACCTGCTCGACACCAGCTCCATGCCGCTCCACCACCACCAGTTCGTGGACAGAACGAGCGT
CGCCGGGGGAGCCAGAGCGGCCAGCGCTCCGAACCCGGGGCTCCATAGCGCGGTCGCGGTGTTCTCGCCGGCACCGTATC
TCAGGTGACGGAGGAGAGAGTTTCTGGTGTATGATGTTCAAAGATTTTCTTA----------------------------
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---------------------------------------------------------------------
>chr5B_455
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-------------------------------------------------------AACCAAACACACCTTGTTGGACTTG
GCTTGC----------------------------GGATATACGCATGTTCCTTAAGAACGGATTGTG-------------
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-------------------------------------------------------------------------CTACCGC
ATCCTTCGCCATCCGCACAACACGGTCATCGGCTACGAGAACCACAACAAGCTTGCCTGGGTGCAGCGCATGGTGCAGGT
GGAGGAT------------C--------------CTGTTTAAC-----CTTTTCTTTTCTGCGATCAGTGCTGGTTCTTC
TGGTTGATCGCCGCGGTTCATGCCTGCCTGCAGACGACGGCGCCGGAGGAGACGGCCCTGGCGCTGAGCGTGATCTCGGA
CAACATCTCGGCGTCCACCACGCCGGCGTCGCTGTGCATCGCGCTGGGCTCGCTGATCGGCGCTTGGGTGAGCAGCAACA
------CCTCGGAGCCGCTCAC---------------CGGCGCCGGCCAGCAGGCGA---CGGGGATGGCATCGGCCAAG
TTCACGTCGCTGCTCGTCTGG----TGGCCTCCTTCGCCTGCTTCATCCAGTCCGCGGGGCACTACGTGCACGCCAGCTT
CCTCATGACCGCGCTGGGGTCGGACGCGCCGGCGAGCCACGTGCAGCGCGCGGTGATCCGGGGCGGCAACTTCTGGGCGC
TGGGGCTCCGGGCGCTCTACTTCGCCACGGCGCTGCTCATGTGGGTGTTCGGCCCGGTGGCCATGCTCGCCTGCTCCGTG
CTCACGGTGGTCGTGCTGCACCTGCTCGACACCAGCTCCATGCCGCTGCACCACCACCAGTTCGTCGACAGAACGAGCGG
CACCAGGGGAGCCAGAGCGCCCACCGCTCCGAACCCGGGGCTTCATAGCGCGGTCCCGGTGTTCTCGCCGGCACCGTATC
TCAGGTGACGGAGGAGAGAGTTTCTGGTGTATGATGTTCAAAGATTT---------------------------------
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---------------------------------------------------------------------
>chr5D_1920
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--------------------------GTGTATGCGATGAATATTATTTTAGAAAAGGAGGTTAAAC-C-CCCGGCCTCTG
CATCAATTGATGCATGCAATCATCTTTATTAATTATTCCACAAAGGTCTGACAAGAACATACATCAATTCACCCGAAGCC
ACCACTCACGCCTACAAACTCGATAATGCGGAGTGCTCTCAC-T-CCCATATCTAAAACCGGTGTCGTCGTCAATTCATC
CATATAACGTATCGAGACCAACAACCGGTGAAGCCTACCTAAAACGCAGACCACATGCATACGTTTTAGAAGCCGCCACT
ATCATCGATCCACTGACCCATCTTCAACAGAGAGATCCGCATCTTCC-TTGCCAG-TCTGGACATCTGTCGACGCCACCA
CGGCGCCCAACGGCGCCACCGTCCTGCGCTCGTCCGTCCAAACGCGAAGACTCTGAAAGATCAATCGTGCGTAGCACCTG
CCAACCAGGCATGACTCAGC----GTAGCACCTATCGGCCAGGCATGACTTGACAGCTCCACCGAAGCTCCGTGCAAGAC
GAAGCCGCTCCACCTCATGCCTCTATCTTCCAGCGCTGCTCCATAAACGATGCACCCAAGAGAGAAA-CGTCATCGTAGT
ACCGCCATCATCCCATCTGGAAGAGCAGATCCTAGGGTTTCCCCCGAAGCAACACGAGTGTGTCGACAACAGTTACACGA
TGATGCCTTCATCAAGGTAACGTCGCAAAA-CGCCGCCATCGCCCGCCAACGGCTCGGTTTTCACCGGCAACTA-TGTCT
CCCCGACTCGTAGCCGGGACTAGATGATGAATCTCAAGATCTGACCACCCAATCGCAGGCCAGCCACCTCTGACGGAAGA
GATGACCACCACCGCTGACTGCACAGGTCAGAACATAGTCTAAGCGGAGGTGTCGCCGACGCGACCACCAGGCCCTCCAC
GCCATCGCCGCCGATCCAAAGGCAAATGGCGCGCCGCCGCCGCCG------------------------
>chr5D_1933
GAAGCAT-------------------------------------------------------------------------
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------------------------------------------TTTTTTCAGAAAAGGAGGTTAATCTCT--CGGCCTTTG
CATCAATCGATGCATGCAGCCATCTTTTTTAATTATTCCACAAAGGTCTAACAAGAACATACATCAATC-ACTCGAAGCC
ACCA-TCACACCTACAAACTCG---ATGTGGAGTGCTCTCAC-TCCCCATATCTAAAACCTGTGTCGTCACCGGTCCATC
CACATAACGTATCGGGACCAACGGCCGGTGCAGCCTACCTAAAGCGCACACCACTTGCATAGGTTTTAGAAGCCGCCATC
ATCATCGGACTACTGACCCCTCTTCAGGAGAGAGATCCGCATCATCC-TTGCCAG-TCCGGACATCCGTCAATGCCACCA
CGGCGCCCAACGACACCACCGCCTTGCGCTCGTCCATCCAGACGTGAAGACTCTGGAAG-TCCATCGTGCGTAGCACCTG
CCAACCAGGCATGACTCAGC----GTAGCACCTGTTGGCCATGCATGACTTGACAGCTCCATCGAAGCTCCGTGCAAGAC
GAAGCCGCTCCACCTCCCGCCTCTGTCTTCCAGCGCTGCTCCAGAAACGATGCTTCCAAGAGAGAAA-CGACACCGTAGT
ACTGCCATCGTCCGATCTGGAAGACCAGATCCTAGGGTTTCTTCCGAAGCAGCACGAGTGGGTCGATAACAGTTACACGA
CGATGCCTTCATCAAGGTAACGACAC-AAAACGCCGCCATCGCCCGCCAACGGCTCGGTTTTCACCGGCAACTA-TGTCT
CCCCGATTCGTAGCCGGGACTAGATGACGAATCTCGAGATCCGACCACCCAGCCGCAGGCCGGCCACCTCTACCGGAAGA
GATGACCACTAC--------------------------------------------------------------------
---------------------------------------------------------------------
>chr5A_1937
ATTTT---------------------------------------------------------------------------
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-----------------------------------------------TTGAAAAAGGAGGTTAAAC-C-CT-GGCCTCTG
CATTAATTGATGCATGCAGCGATCTTTATTAATTATTTCATAAAGGTCTGACAAGAATATACATCAATTCAC-TGAAGCC
ACCACTCACACTTACAACATGT-------GGAGTACTCTTAC-TT---ATATCTAAAACCGGTGTCGTCACCGATCCATC
CACGTAACGTATTGGGGCCAACAGCCAGTGCAACCTACCTAAAACGCACACCACATGCATACA-TTTAGAAGCCGCCATC
ATCATCGAACCGCTGACCCATCTTCAG-AGAGAGATCCACATCATCC-TTGCCATTTCCAGACATTTGTCGACGCCACCA
CGGCGCCCAACGGTGCCACTGCCCTACGCTCATTCGTCCAGACGTGAAGACTCTGGAAGATCCGTCGTGCGTACCACCTG
CCAACCAGGCATGACTTAGC----ATAGCACCTGTCGGTCAGGCATGACTTGGCAGCTCCATCGAAGCTCCGTGCAAGAT
GAAGCCGCTCCACCACCTGCCTCTGTCTTCCAGCGCTGCTCCACGAACGATGCTCCCAAAAGAAAAA-CGACACCATAGT
ACCACCGTCGTCTAATCTGGAAGACCAGATCCTAGGGTTTCCCCCGAAGCAGCACAAGTGGGTTGACAACAGCTACACGA
TGATGCCTTCATCGAGGTAACGACGC-AAAACGCCGCCATCGCCCGCCAACGACTCGGTTTTCACCGGTAACTA-TGTCT
TATCGACTCGTAGCTGGGACTAGATGATGAATCTCGAGATCCGACCGTCCAGCCGTAGGCCGACCACCTCTGACGGAAGA
GATGACCACCATCGCCGGCTGCACCGGTTAGAACAAA-TCTAACCGGAGGTGCCCCCGATGTGACCACCAGGCCCTCCAT
GCTGCCGCTGCCAATCCAAAAGCAGATGGCGCGCCG---------------------------------
>chr2D_1937
ATC-----------------------------------------------------------------------------
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--------------------------------------------TTTTTAGAAAAGGAGGTTAAAC-C-CC--GCCTCTG
CATCAATCGATGCATGCAGCCATCTTTATTAATTATTTTACAAGGGTCTAACAAGAACATACATCAATCCACCCGAAACC
ATCACTCACACCTACAAACTCGATAATATGGAGTGCTCTTAG-GCCCCATATCTAAAACCGGTGTCGTCGCCAATACATC
CACATAACGTATCGGGACCAACAGCCGGTGCAGCCTACCTAAAGCGCACACCACATGCATACGTTTTAGAAGCCGCAATC
ATCATCGGACCACTTACCCATCTTCAGAAGAGAGATCCGCATCATCC-TTGCCAG-TCCAGACATCCGTCGACGCAACCA
CGGCGCCCATTGGCGCCACCGCCCTGCGCTCGTCAGTCCAGACACGAACACTCTGGAAGATCCGTCGTGCGTAGCACCTG
CCAACCAGGCATGACTCAGC----GTAGCACCTGTCGGCCAGGCATGACTTGACAACTCCATCGAATCTCCGTGCAAGAC
GAAGTCGCTCCACCTCCTGCCTCTGTCTTCCAGCGCTGCTCCACAAACGATACTTCCAAGAGAGAAA-CGGCACCGTAGT
ACCGCCATCGTCCGATCTGGAAGATCAGATCCAAGGGTTTCCCTCAAAGCAGCACGAGTGGGTCGACAACAGTTACACAA
CAATGCCTTCATCAAGGTAACGGCGCAAG-ACGCCACCATCGCCCGCCAACGGCTCGGTTTTCACCGGCAACTA-TGTCT
CCCCGACTCGTAGCCGAGACTAGACGACGAATCTCGAGATCCGACCACCCAGCCACAGGCCGGCCACCTCTGACGGAAGA
GATGAGCACCACCGCCGGCTGCACCGGTCAGAACAGA-TCTAACCGGAGGTGCCGCCGACGCAACCACTAGGCCCTCCAC
GCCGCCGCTGCCGATCCAAAGGCAGATGGCGTGCCGCCGCCACCA----CCCAAACAGGCAGACCGCC-
>chr1D_1938
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------------------------------------------TTTTTTTAGAAAAGGAGGTTAAAC-CT--CCGCCTTTG
CATCAATCGATGCATGCAGCCATCTTTATTAATTATTCCACAAAGGTCTGATGAGAACATACATTAATTCACCCGAAGCC
ACCACTCACACCTATAAACTCGATAATATGGAGTGCTCTCAC-TCCCCATATCTAAAACCGGTGTCGTCGCCGATCCATC
CGCATAACATATCGGGACCAACAGCCGGTGCAGCCTACCTAAAGCGCACAACACATGCACACGTTTTAGAAGCCGTCATC
ATCATCGGACCACTGACCCATCTTCGGGAGAGATATTCGCATCATCCTT-ACCAG-TCCGGACATCCGTCGACGCCACCA
TGGCGCCCAACGGTGCCACCGCCCTGCGCTCATCCGCCCAGACGCGAAGACTCTGGAAGATCTGTCGTGCGTGGCACCTG
CCAACCAGGCATGACTCAGC----GTAGCACCTGTCGGCCAGGTATGACTTGACAGCTCCACCGAAGCTCCGTGCAAGAC
GAAGCCGCTCCACCTCCTGCCTCTGCCTTCCAGCGCTACTCCATAAATGATGCTCCCAAGAGAGAAA-CGGCACCGTAGT
ACCGCCATCGTCCGATCTGGAAGACCGGATACTAGGGTTTCCCCCGAAGCAGCACGAGTGGGTCGACAACAGTTACACGA
CGATGCCTTCATCAAGGTAACGGCGCAAAAACGCCGCCATCGCCCGCCAACGGCTCGGTTTTCACCGGCAACT---GTCT
CCCCAACTCGTAGCCGTGACTAAATGACGAATCTCGAGATCCGACCACCCAGCCGCAGGCCAACCACCTCTGACGGAAGA
GATGACCACCACCGTCGACTGCACCGGTCAGAACAGA-TCTGACCGGAGGTGCCGCCGCTGCAACCACCAGGCCCTCCAC
GCCGCCGATGTCGATTCAAAGGCAGATGGCGCGCAGCAT-CGCCGCCGCCCGAACAGGGCTGGCCGCC-
>chr7D_1938
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------------------------------------------TTTTTTTAGAAAAGGAGGTTAAGC-C-CCCGGCCTCTG
CATCAATCGATGCATGCAGCCATCTTTATTAATTATTCCACAAAGGTCTAACAAGAACATACATCAATCCACCCAAAACC
ACCACTCACACCTACAAACTCGATAATGTGGAGTGCTCTCAC-TCCCCATATCTAAAACCGGTGTCGTCGCCGATCCATC
CACATAACGTATCGGTACCAACAGCCGGTGCAGCCTACCTAAAGCACACACCACATGCACACATTTTAGAAGCCGCCATC
ATCATCGGACCACTGACCCATCTTCAGGAGAGAGATCTGCATCATCCTTTGCTAG-TCCAGACATTCGTCGACGCCACCA
CGGCGCCCAACAGCGCCACCGCCCTGCGCTCGTCCATCCAGACGCGAAGACTCTGGAAGATCTGTCGTGCGTAGCACCTG
CCAACTAGGCATGACTCAGC----GTAGCACCTGTCGGCCGGGCATGATTTTACAGCTTCACCGAAGCTCCGTGCAAGAC
GAAGCCGCTCCACCTCCTGCCTCTATCTTCTAGCGCTGCTCCACAAACAATGCTCCCAAGAGAGAAA-CGGCACCGTAGT
ACCGCCATCGTCCGATCTGGAAGACCAAATCCTAGGGTTTGCCCCAAAGCAGCACGTGTGGATCGACAACAGTTACACGA
CGATGCCTTCATCAAGGTAACGGCGCAAAA-CGCCGCCATCGCCCGCCAACGGCTCAGTTTTCATCGGCAACTA-TGTCT
CCCCGACTCGTAGCCGGGACTAGATGATGAACCTCGAGATCCGACCACCCAGCCGCAGGTCGACCACCTTTGACGGAAGA
GATGACCACCACCGCCGGCTGCACCGGTCAAAACAGA-TCTGACTGGAGGTGCCGCCGATGCAACCACCAGG-CCTGCGC
GCCGCCGCCGCCGATCCAAAGGCAGATGGCGCGCCGCCGCCGCCGCCACCCAAACAGGGCTGGCCGCC-
>chr2D_1938
--------------------------------------------------------------------------------
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------------------------------------------TTTTTTTAGAAAAGGTGGTTAAAC-C-CCCGGCCTCTG
CATCAATCGATGCATGCAACCATCTTTATTAATTATTCTTCAATGGTCTGACAAGAACATACATCAATCCACCTGAAGCC
ATTACTCACACCTACAAACTCGATAATGTAGAGTGCTCTCAC-TCCCCATATGTAAAATCGGTGTCGTCGCAGATCCATC
CACAAAATGTATCGGGACCAACAACTGGTGCAGCCTACCTAAAGCGCATACCACATGCATACGTTTTAGAAGCCGGCATC
ATCATCGGACTACTGACCCATCTTCAGGAGAGAT--CCGCATCATCCTT-GCCAG-TTCGGACATCCGTCGACGCCACCA
CGGCGCCCAACGGCGTCACCGCCCTGCGCTCGTCCGTCCAGACGCGAAGACTCTAGAAGATCTGTCGTGCGTAGCACCTG
CCAACCAGGCATGACTCAGCATACGTAGCACCTGTCGGCCAGGCATGACTTGACAACTCTACCGAAGCTCCGTGCAAGAC
GAAGCCGCTCCACCTCCTGCCTCTGTCTTCCAGCGCTGCTTCACAAACGATACTCCCAAGAGAGATA-CGGCACCGTAGT
ACCGCCATCGTCCGATCTAGAAGACCAGATCCTAGGGTTTCCCCCGAAGCAGCACGAGTGGGTCGACAACAGTTACACGA
CGATGCCTTCATCAAGGTAAGGGTGCAAAA-TGCTGCCATCGCCCGCCAACGGCTCGGTTTTCACCAGCAACTA-TGTCT
CCCTAACTCGTAGCCGGGACTAGATGACCAATCTCGAGATCCGACCACCTAGCCGCAGGGCGGCCACCTCTAACGGAAGA
GATGACCACCACCGCTAGCTGCACCGGTCAGATTAGA-TCTAACCGGAGTTGCCGCCGACGCGACCACCAGGCCCTCCAC
GCCGCCGCCGCAGATCCAAAGGCAGATGGCGCGTCGCCGCCGCCGCTGCCCAAACAGGGCAGGCCGCC-
>chr6D_1938
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------------------------------------------TTTTTTTGGAAAAGGAGGTTAAAC-C-CCCAGCCTCTA
CATCAATCGATGCATGCAGCCATCTTTATTAATTATTTCACAAAGGTCTGACAAGAATATACATCAATCTACCCGAAGCC
ACTAGTCACACCTACAAACTCGATAATGTGGAGTGCTCTCAC-TCCCCATATTTAAAATATGTGTCGTCGTCGATCCATC
CACATAATGTATTGGGACCAACAACCGGTGCAGCCTACCTAAAGCGCATGCCATATGCATACGTTTTAGAAGCCACCACC
ATCATCGGACCACTGATCCATCTTCAGGAGAGAGATCCGCATCTTCCTT-GCCAG-TCCGGAAATCTGTCGACGCCACCA
CGACGCCCAACGATGCCACCGCCCTGCGCTCGTCCGTCCAGACGTGAAGACTCTGAAAGATCCATCGTGCGTAGCACCTG
CCAACCAGGCATGACTCAGC----GTAGCACCTGTCGGCCAGGCATGACTTGACAGCTCCATCGAAGCTCCATGTAAGAC
GAAGCCGCTCCACCTCCTGCCTCTGTCTTCTATCGCTACTCCACAAATGATGCTCCCAAGAGAGAAA-CGGCACCATAGT
ACCGCCATCGTCCGATCTGGAAGACCAGATCCTAGGGTTTCCCCCGAAGCAGCACGAGTGGGTCGACAACAGTTACGCGA
CGATGCCTTCATCAAGGTAACGGCGCAAAA-CGCCGCCATCGCCCGCCAACGGCTCGGTTTTCACCGGCAACCA-TGTCT
TCCCGACTCGTAGCCGGGACTAGATGACGAATCTCGAGATCCAACCACCCAGCCGCAGGTCGGCCACCTCTGACGAAAGA
GATGACCCCCACCGCCGGCTGCACCGGTCAGAACAAA-TCTAACCGGAGGTGCCGCCGATGAGACCACCAGGCCCTCCAC
ACCGCCGCCGCCGATCCAAAGGCAGATGGCGCGCCGCCGCCATCGCCGCCCGAACAGGGCAGGCCGCC-
>chr5B_1939
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-------------------------------------------TTTTTTAGAAAAGGAGGTTAAAT---CCCGGCCTCTA
TATCAATCGATGCATGCAACCATCTTTATTAATTATTTCATAAATGTCTGGCAAGAACATACATCACCGCACTCGAAGCC
ACCATTCACACCTACAAACTCGATA-----GAGTGCTCTCAC-TTCCCATATGTAGAACCGGCGTCGTCATCGATTCATT
CACACAACGTATCGGAACCAACAACCGGTGCAGCCTACCTAACGGGCACACCACATGCACATGTTTTAGAAGCCGCCATA
ATCATCGGACCACTGACCCATCTTTAGGAGAGAGATCCGCTTCATCTTT-GCCAG-TCCAGACATCCGTCGACGCCACCA
AGGCGCCCAACGGCGCCACCGCCCTACGCTCGTCCGTCCAGACGCGAAGACTCTGGAAGATCTGTCATGCGTAGCACCTG
CCAACCAGGCATGACTCAGC----GTAGCACCTATCGTCCAGGCATGACTTGACAGCTCCACCGAAGCTCCGTGCAAGAC
GGAGCCGCTCCATCTTCTGCCTCTGTCTTTCAGCGCTCCTCCATAAACGATGCTCCCAAGAGAGAAAACGTCACCGTAGT
ACCGCCATCGCCTGATATGGAAGACCAGATCCTAGGGTTTCCTCCGAAGCAGTACGAGTGGGTCGACAACAGTTACACGA
CGATGCCTTCATCAAGGTAACGGCGCAAAA-CACCGCCATCGCTCGCCAACGGCTCGGTTTTTACCGGCAACTA-TGTCT
CCCCGACTCGTAGTCGGGATTAGATGATGAATCTCGAGATCCGACCACCCAGCCGCAGGCCGACCACTA--G-CGGAAGA
GATGACCACCACCGCCTGATGCACCGGTCGGAACAGA-TCTAATCGGAGGTGCCGCCGACTCGACCACCAGGCTCTCCAT
GCCGCCGCCACCGATCCAAAGGCAGATGGCGCTCCGCCGCCGCCG------------------------
>chr5A_1972
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------------G
CATAAATCGATGCATACAATCATTTTTATTAATTATTCAACAAAGGTCTGACAAGAATATACATCAAACCACCCGAAGCC
ATCACTCACACCTATAAACTCAATAATGTGGAGTGCTCTCAC-TCCTTATATTT-AAACCGGTGTCATCGCTGATCCATC
CACATAAAGTATCGGAACCAACAGCCGGTTTAGCAGACCTAAAGCGTACATCACATGCACATATTTTAGAAGCCGCCATC
ATCATCGGACCGCTCACCCATCTTCAGGAGAGAGATCCGCATAATCCTT-GACAA-TCCGGCCATCTGTCGATGCCACCA
CGGTGCACAACGGCGCCACCGGCCTGCGTTCGTCCATCCAGACGCGAAGACTCTGAAAGATCTGTCGTGCGTAGCACCTG
CCGACTAAGCATGACACAG-----GTAACACCTGTCGGCCAGGCATGACTTGACATCTTCACCGAAACTCCATGCAAGAC
GAAGCGGCTTGATGTCCTACCTTTGTCTTCCAGCACTGCTTCACAAACGATGTTCCCAAGAGAGAAA-CGACACCATAGT
ACCGCCATCAGGCGATCTGAAAGACGAGAACCTAGGGTTTCTCCCGAAGCAGCACGAGTGGGTCCACAGTAGTTACACGA
TGATGCCTTCATCAAGGTAACGGCGCAGAA-CACTGCCATCG----------GCTCGGTTTTCACCGGAAACAA-TGTCT
CCCCGACTCGCAACCGAGACTAGATGAAGGATCTCAAGATCCAACCACTCAGCCTCAGGTCGGCCACCTCCGATGGAGGA
GATGGCCACCGCC-------------------------------------------------------------------
---------------------------------------------------------------------
>chr1D_2020
A-------------------------------------------------------------------------------
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-------------------------------------------------AAAAAGAACATACATTAATCCATCTGAAGCC
ACCACTCACACCTACAAACTCGATAATGTGGAGTGCTCTCAC-TCCTCATATCTAAAACCGGTGTCATCGCCAATCCATC
CACATAACGTATCGGGACCAACAGCCGGTGCAGACTACCTAAAGCGCACACCACATGCATACGTTTTAGAAGCCGCCATC
ATCATCGGACCACTAACCCATCTTCAGGAGAGAGATCCGCATCTTCCTT-GACAG-TCCGGACATCCGTCGACGCCACCA
CGGCGCCCAACGACGCCACCGCCCTGCGCTCATCCGTCCAGACGCGAAGACTCTGGAAGATCCGTCGTGCGTAGCACCTG
CCAACAAGGCATGACTCAGC----GTAGCACCTGTCGGCTAGGCATGACTTGACAGCTCCACCGAAGCTCCGTGCAAGAC
GAAGCCGCTCCACCTCCTGCCTCTGTCTTTCAGCGCTGCTCCACAAACGATGCTCCCAAGAGAGAAA-CAGTACCGCAAT
ACCGCCATCATTCGATCTGGAAGACCAGATCCTAGGGTTTCGTCCGAAGCAGCACAAGTGGGTCAACAACAGTTACACGA
CGATGCCTTCATCAAGGTAACGGCGCAAAA-CACCGCCATCACCTGCCAACGGCTCGGTTTTCAGCGGCAACTATTGTCT
CCCCGACTCGTAGCCGAGACTAGATGACGAATCTCGAGATCCGACCACCCAGCCGCAGGCTGGACACCTCTGACGGAAGA
GATGACCACCACCGCCGGCTGCACCGGTCAGAACAGA-TCTAACCGAAGGTGCCGCCGACGTGACTACCAGGCCCTCCAC
GCCGCCGCCGCCGATCCAAAGGCAGATGGCGTGCCGCCGCC----------------------------
>SNPs
-------------------------S-------------S-------------------S----SSS------------S
-----------------S-S-S-SSSSSS------------S----------------------------S---------
-----------------------------------S-S--------S----S-S--------------------------
---S-----------------------------S-----------------S-----S------S---S-----------
---------S------S---------S--S--S----SS-----------SS-----------S--------S-------
---S------S------------S-------S----------S------S-----------------------S---S--
--------S-SS--------------------------------------------------------S----S------
--------------S-----------------------------------------------------------------
---------------------S-------------------------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S---------------------------------
----------------------S---------S-S---------------S-----------------S-------S---
----------S----------------------------S-S--------------------------------------
-S---SSSSSSS--------------------------------------------------------------------
-----------S-------S--------------S---------------------------------------------
-----------------------S--------------------------------------------------------
-------SSSSSSSSSSSS---------------SSSSS-SS-SSSSS------------------S----S--------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------S--
--S-------------------------------------S------------S--------------------------
--------------------------------------------------------------------------------
---------------------------------------------------S----------------------------
--------------------------------------------------------------------------------
-----------------S---------------------------------------------S----------------
---S------S------------------------------------------------------------SS-------
-----------------S---------------------S---------------SS-----------S--S-S------
-----------------------------------------------SS-------------------------------
--------------------------------S---------S--------------------S----------------
-------------S--------------------------------------------S---------------------
-------------------S-----------------------S------------------------------------
------------------------------------------------S------S------------------------
----S---------------------------------------------------------------------------
S-----S------------------------------------------------S------------------S-----
------------------------------------------S----------------------------S--------
------------------------------------S---S-----------------------------S---------
---------S-----------------------------------------------------S----------------
--------------------------------S----------------S---S-S----S----------S--------
------------------------------------S--------S----------------------S
>forward_742
--------------------------------------------------------------------------------
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--CGAGATGATGCGTCTTCCCA----------------------------------------------------------
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>reverse_2219
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----------------------------------------------------------TCACGTTTTAGAAGCCGCCA--
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---------------------------------------------------------------------
