>input_sequence_65828
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------------------------------------------ATGGGAGTCGACAAGCACGAGATGAAGGACAATATGGA
GGAAAAAGAGAAGCTTATCTCCCTCAAATATGAACATCTCCCAGATTTTTGTTATAACTGCGGTATTTTAAGTCACAAGG
AGAAGTCATGCCCGATCAGAACCGGAAGACAGGGACATAAAAATTTTGGTCCATGGCTGCAAGCAACTATTCTCAGGAGT
AGCTCCAGTGAAGAGAAAAGCAGGAGCTCAAATGACAGAAGGGGTTTCTGGTTAACAAACAATGCAGGCAGCAATGGCAG
CAAGCAGGGAAGTGATGCTCCATCTTGGAAGAGAAATTCATCACCGGATAGGGATAATGATAGGTCAAGGAAAGGTGAGG
AGAATGAAGTAGCAAGCCCCCTGATAACGGTGCAAGAAAGCAAAACTCAGCCAGCTGAAGTAAGGAGGCCGTCTTTAGAG
GATAATACACAAGTATCCGAGACAAAGTGGAATAAGGCAGAAGATGACTTTGAACCTAGAAATAGAAATACTTCCGAAAC
AGTTTTATTGCTAATAGCTAAAGAGACTGCCAATAAAATTTTTTTGCCAGCGGAGGAAGTAAATGAAGACAAGGAGAGGC
CTCATGTAAAGGTGGACGGACAGAAGAAGGAAATCAAAGACCCAAAGAAGGTCAACAATGCAAAACAAGGCACTTTCAAG
CGCATTCCGAGAGCAAAAAATAATCATCAACAAGATCAGAGCTTTGAATTTGAATTGAAAAAGAGGAGTGCTATGCTGAT
GGAGGTAGATACAGAAGCCAAGCCTTCAAAGAGAACTAGAATGGAGGTCGACGGTGAGAATAATGGAGATGGTGAAAAAG
AAGAAAATAACAACTCTAAGATTGTGAACGCTGGGCTGCAAGGACAGCCCGACGAACCAAAATGA---------------
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>chr3B_1_TraesCS3B01G471200
AGTGTTTTTGTAATATATATATTTAGAATATGTTTAAATGTATACACACAAAACTAAACACACAACACACACACACACAC
ACACACACACACACACACACACACACACACACACACACATAACGTCGGCATGACTTCAGCGTAGTTGAGATCCAAGCTAG
TTCTTCGCGCCCCTCACAGCTCTCCCCCGTCCCAAGTCAACTACCCCATCCCAGGATCTCAAATCCAAGTGCTGCAGGGG
AGATTGGACTCCCATTTGGGCGGCTTCTCCAGTCCAGTTCTTGGGCAGTGGCAGCGGGGGCGGTGGAGGTGGCGGTGTTC
TGTGGCGCCTGGGGAGGCGACACAAGCCCAG--TCTCCGGCTGTGTGCGGTCGCCATGGGTGACAGGAGGACCCCTGCTT
TGGAAGGGCTATAGGGGAAACTGCAGAGCTTGAAACTCTCAGATGCAAAAAAGAGGAGCACAAAGATTGGAAGGAAACAT
GGCTGCTCGCTGGCGGTAGGAAAGCTACAGGCTGTGGGTAAGCTCTTCTCCGAAAGACCAGCTAAAGCAGAATATTTGGG
AAAAACTTTAGGCAGCATTTGGAGTCCCTTCACGGGTGTAGAATGTAAGGACTTGAATAGAAATCGATTCCTCTTCTCGT
TCCATGATGTAGAAAGTAAGAGGAAGGCTCTGCATAATGGACCGTGGTCGTTTACTAAGGAGTTATTAGTCATGGAAGAT
TTCATGCCAAACAAAACGATTGATGACTATGAGTTTAGGACTATCCCCATATGGGTTAGAGCATATGGTATTCCTATGGG
AATGATGAACTCAGAGGCAGGGGAGCTGGTGGGAGAATAGATTGGGGAGGTCCTGGATATAGACATGGATGACAATGGAT
ATGCAATGGGCGAATTTATGAGAATCAAAGTCCGAATGGACATAACCGTCCCAATAATGAGGTTCTCCACTTTAGAGTTT
GGGGAGGATGAAGGGGAACAAGTTCAGACATCTGAATAAATAATGGGAGTCGACAAGCACGAGATGAAGGACAATATGGA
GGAAAAAGAGAAGCTTATCTCCCTCAAATATGAACATCTCCCAGATTTTTGTTATAACTGCGGTATTTTAAGTCACAAGG
AGAAGTCATGCCCGATCAGAACCGGAAGACAGGGACATAAAAATTTTGGTCCATGGCTGCAAGCAACTATTCTCAGGAGT
AGCTCCAGTGAAGAGAAAAGCAGGAGCTCAAATGACAGAAGGGGTTTCTGGTTAACAAACAATGCAGGCAGCAATGGCAG
CAAGCAGGGAAGTGATGCTCCATCTTGGAAGAGAAATTCATCACCGGATAGGGATAATGATAGGTCAAGGAAAGGTGAGG
AGAATGAAGTAGCAAGCCCCCTGATAACGGTGCAAGAAAGCAAAACTCAGCCAGCTGAAGTAAGGAGGCCGTCTTTAGAG
GATAATACACAAGTATCCGAGACAAAGTGGAATAAGGCAGAAGATGACTTTGAACCTAGAAATAGAAATACTTCCGAAAC
AGTTTTATTGCTAATAGCTAAAGAGACTGCCAATAAAATTTTTTTGCCAGCGGAGGAAGTAAATGAAGACAAGGAGAGGC
CTCATGTAAAGGTGGACGGACAGAAGAAGGAAATCAAAGACCCAAAGAAGGTCAACAATGCAAAACAAGGCACTTTCAAG
CGCATTCCGAGAGCAAAAAATAATCATCAACAAGATCAGAGCTTTGAATTTGAATTGAAAAAGAGGAGTGCTATGCTGAT
GGAGGTAGATACAGAAGCCAAGCCTTCAAAGAGAACTAGAATGGAGGTCGACGGTGAGAATAATGGAGATGGTGAAAAAG
AAGAAAATAACAACTCTAAGATTGTGAACGCTGGGCTGCAAGGACAGCCCGACGAACCAAAATGAAAATTACGGTTTGGA
ATTGCCGGGGTTTGGGGAATGACCCGACAGTTCGTGGACTTCTGGACCTCCAAAGGCGGGAGGATCCCGATATCCTCTTC
CTATCCGAGACCAAGACGGATGAGAAGAGGATGAGTTGGATTAAGTATTTTCTACGTATGCCAAATATGGTTGTAAGAGG
CAGTGAAGGTAAGAGTGGAGGGCTAGCTCTGTTATGGAAGAAACATGTTAAAGTGGAGTTACACAACTACCCAAGATACC
ATATCGATGTGGAGATAGTGGAGCAAGATGGTTTTAGATGGAGGTTTACGGGCATATATGGAGAACCCGCCACTGAAAAG
AGGGAGATAACATGGAAGCTTCTGAGAAACCTCTACTGCGAGCTTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACTTGGGCTATTTAGGTGACAAGTACACATGAAGAAACCACAGT
CAGTGTGCCAGCAAATATGTTAAAGAGAGACTAGATAGAGCAGTGGGATCCCTAAGTTGGTGTGATAGGTTTCCATCTTA
TCAGGTGATAATTGGGGACCCACGACACTCGGATCACCGCCTTGTGACCATTCTAGTGGAGGAGAGAAATGGAGAAGCGA
GAGATCAAAGGGCCCGTAGGCGGTTCAGATTTGAAGCGAAGTGGTTACAAGAAGAAGGTTGTGAAGAGATTATCAGTAAT
GCTAAGGCAGTTGCCTCCCTTCGAG
>chr5D_330
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---------TGGTGTGGCGACACAAGCCCAGAATCTCCAGCTAGGCGGGGTTGCCATGGGCGACAGGACGGCCCCTGTTT
TGGACTGGGTAGACGAGAAACTGTAGAGTTTGAAGCTGTCAGATGCAGAAAAGAGAAGCATAAAGATTGGAAGGAAACAC
ACCTGCTCATCGACGGTGGGAAAGCTCCGGGCTGTGGGTAAGCTCTTCTCTGAAAGACCAGCTAAAGCAGAATATTTAGG
AAGAACGTTAGGCAGCATCTGGAGCCCTTTCACTGGAGTGGATTGTAAGGATTTGAATAGGAATCGATTCCTTTTCTCGT
TCCATGAAGAAGATAGTAAAAGGAAGGCTTTAAATAATGGACCGTGGTCGTTTAATAAGGAGTTATTAGTGATGGAAGAT
TTTATGCCAAGCAAAACAATTGATGAGTATGAATATAAGACTATCCCCATATGGGTTAGAGCATATGGTATTCCTTTGGG
AATGATGAACACAGAGGTAGGGAGTCTGGTGGGAGAACAAATTGGAGAGGTCTTGGATATAGACATGGATGATAATGGAA
ATGCCATGGGTAAATTCATGAGAATCAAACTCCGGATGGATATAACAGTCCCAATAATGAGGCTCACCACTTTAGAAATC
GAGGAGGATGAGGAGGAACATGCTTAGACATATGAAGAAATGATGGGAGTCGACGAGAAAGAGAACAAGGAAAAGAAAGA
GGGAAAAGA-----------------------------------------------------------------------
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>chr2A_330
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---------TGGTGTGGTGACACAAGCCCAAAATCTCCAGCTAGGCGGGGTTTCCATGGGCGACAGGAAGGCCCCTATTT
TGGACGGGGTAGAGGAGAAACTGCAGAGTTTGAAGTTGTCGGATGTAGAAAAGAGAAGCATAAAGATTGGAAGGAAACAC
ACTTGCTCATCGATGGTGGGCAAGCTCCAGGTTGTGGGTAAGCTCTTCTATGAAAGACTAACTAAAGCAGAATATTTAGG
AAGAACGCTAGGCAGCATCTGGAGCCCTTTCACTAGAGTGGATTGTAAGGATTTGAATAGAAATCGATTCCTTTTCTCGT
TCCATGAAGAAGATAGTAAAAGGAAGTCTCTAAATAACGGACCATGGTCGTTTAATAAGGAGTTACTAGTGATGGAAGAT
TTTATGCCAAGCAAAACAATTGATGAGTATGAATTTAAGACTATCCCCATATGGGTTAGAGCATATGGTATTCCTTTGGG
AATGATGAACACAGAGGTAGGGAGTCTGGTGGGAGAACAAATTGGAGAGGTCTTGGATATAGACATGGATGATAATGGAA
ATGCAATGGGTGAATTCATGAGAATCAAACTATGGATGGATATAACAGTCCC----------------------------
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>chr5D_1687
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--------GAGAGCAAACAACAAGCACCAACAAGGACAAATATTTGAATTTAAACCAAAGAAAAGGAATGGTTTAGTGAT
GGAGGTGGACACAGAAGGCGAGCCTATGAAGAGAGCCGGAATGGAGATTGATGGTGAGATCGT---AGAAGGTGAAAATA
TAGAAAACAACAATTCCGATATTGTGAACGCTGGGCTGCAAGGACAGCCCGGCGAATCAAAATGAAAATTATGGTTTGGA
ACTGCCGGGGTTTGGGGAATGGCCCGGCTGTTCGGGGGCTTCTGGACCTCCAGAAGCAGGAGGACCCCAACATCCTCTTC
TTATCTGAAACAAGGATGGATGAGATAAGGATGTTGTGGTTTAAGTACTTGCTAGGGATGACAAGCACAGTGGTGAGGGG
TTGTGTAGGAAGAAGTGG-GGGCTTGCTATGCTATGGAAGAATCATGTAAAAGTCAACCTGCACAACTACTCAAGAAATC
ACATTGATGTGGTGATAGTGGAGCAGGATGGATTTAGATGGAGATTTAATGGCATATATGGCGAGCCGGCAACAAATAAA
AAGCAGAAAACATGGAAGCTCTTGAGAA----------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS---S-S-----------------------S---SS-S-S---S--------S-------S-S------S--
----S---S--S---S------------S-----S--S---------S-------S----S------------------S
SS------SSS-S----S--------S-----------------------S--------------------------S--
--S---S-----------S-----S--S-----S--S--S--S--------S--------------------S-------
-------S-S---S-----S-----------SS---------------------S---------------S---------
--S-------S------S--------S-----S----S-------------------------------------S----
----------S------S----SSS------------S-S-----S------S-------------------S------S
----------S-----S------------S----S-----S-----S---------------S--S----------SS-S
-S---------S-S------S-S-S------S----S----S------------S--S-S----SS-----S--S-SS--
--S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS---------S--S--S--S-------SS--S-SS---------S--SSS--S--S----S--S-S-SS----
------S--S-------S-S-----SSS------S-SS--------S-S--S-------SSSSSSS---S--------SS
S------S-----S--SS-S-------------------------------S----S--------------S--------
-S-------------------S----S-S-----S--S--------------S-S--S------S---S-S---------
S----S--S--S-S--S--------SS------SSS---S-------S--S---S-S---S---SS-SS--S--S--S--
SS---S---S-SS-----S-----S---S--S----------S-----S-----SS-SS-S---------S-----S-S-
-S--S-------S------------S-----S-----------S----SS-----------S--S--S--S--SS-S--S
-S-S---S------------SS------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS
>forward_204
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------------------------CCCCGTCCCAAGTCAACTAC------------------------------------
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>reverse_1282
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-AAGCAGGGAAGTGATGCTCC-----------------------------------------------------------
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>forward_1134
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--------------------------------------------------------------------------ACAAGG
AGAAGTCATGCCCG------------------------------------------------------------------
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>reverse_2801
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GAGATCAAAGGGCCCGTAGG------------------------------------------------------------
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