>input_sequence_65827
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------------ATGAGCGAGGGCGCGCGGAACACGCGGCAGTTCCGCGGCGCGTGGAGCGGCGGCGGCGGGACGGGTGG
CATTGGCAGCGCGAGCTACCGGGATGGCGACGGCGGCATTGGGTCCCCGCGCTACAGCGGCGTCAACACGGGCATCCTGG
ACGAGCAGGTGCTGTCGCTGGTGTTCCGCTCCATCAACTGGGACCCGCAGGCGCTCTGCACGGCGGCGAGCGTCAACCGC
CGGCTCCGCGCCGTCGCGGAGCGCGTGCTCTGGCGGGAGCTCTGCATCTCGCGCGCCCCGCGGATGGTGGCGTCGCTCAC
GGCAGCCGCGGCGG------TCGGAGTCGGCGCGGCCCCGCCGCCACCGGGGCGCATTGGCGGCGGCTGGCCGGCGCTGG
CGAAGCTGCTCTCCTTCTGCTGCGGCGCCGCGGGGACGGCCGTGG------CGGTGCCGGGGCACCTCACGCGGGTGTCG
CGCTTCTCCAAGACCTCGGGGCGGAGCTTCCTGTCGCGGCGGTGCAGGAGCGACATGCTGTACGTGTCCGACCCGTGCGA
GCACGCGGTGCCCGGCGCGGACGACGACCTCGGCGCCTACCGCGGGGTGTTCCGGTGGTTCATTCGGTCGCGGACGCGGG
CCTGCCTGCTGGGCCGCCAGGCCGAGCTCGACCCGCGCGTGCGCTGCCCCTACTGCGGCGCGCGCGTCTGGAACATGGTC
GCCGCGAACCTCGTGCCGCGCGGCGCGTCGCGCCGGATGGGCTCGGATGAGGGCCGGCTCGAGTACTACGTCTGCGTCAG
CGGCCACGTCCACGGCAACTGCTGGCTCGCGCATCTTACCTCAAGTGAAGGCGAGCACGACGGCGACCCCGACTCCGACG
ACGCGTCGGGGGGTAGCAGCGGCGAGGACGGCCATGTCGCCCAGTGA---------------------------------
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>chr3B_1_TraesCS3B01G361400
CAGTCAGAAATATCCCACACCACGCGCGGGGGGGACTTTTCCCGCCACACCTGGCGCTGCAGCGGACGTCGCCGTGTCCA
TCCCCGGCACAGGGCACCTGACGACTGACCCGCCGGAAAAGCGCCCGCGGTCACCGCCGAAAAAGAACGATAAAAGTGGC
AGCCGCGCACGAGGCGCTCGAAAGAGAGATCGGCTGCGCCTGGACTGGACGCCCGACGCGCGTCCCCGGCCACGGCCACG
CGCCGGCCGGCGAGGCGCCTCTTCAGCGATGGACGCGCTGCAGGGCGACACGTGTGCACCTCGTGGCGCTCCCGGAGAGC
CGGCGTAGGTGGGTGGATTAGGAAATGCGGCGACGGATTAAGTAGTGCGCTCGCTTGTCTCGCGGCAGCGTGCGTGAACG
ATCCAAGCTTTTGATACGGACAGGCCCTAAAATATGGACGGACACGTATGGAAATGGCAACGGGCTGGTCGTGAGGGCGA
GATGATTGTCAGGTAGTGCCGAACAGTACCCGAGTTTGGGCAGGGGGTCGGTGGTCCTGATCGATGCACAAGATTACTCT
AATGCACGAGGACGCGTTGATCCAGAGTACTCCGTGAAGTAGGCGTGCTTAT--TTTACTGTGGCGCTATCCTGTAGCGT
ATCTTTGGGAGGAGGTGAAAA--------TTGTTTGGCAAGATGACTTTTGCAATGCAGCTAGCGAGGCCAGCAACAGAT
TACGGGGGTCT----------CGAAGCGTCAGTGGTCCAATTGTCCAACGGGCAGCCGTGACACGGCGACACGACACGGG
CGGTC-----CGATCCTGCCCCGACACCACCCCTTCCGGGGAGCACGCACGAAAGCGCCCGCCGCGCGTCTATATAGAGG
GAGCCCGCCGCCGTCTGTCATCTCCGTCCTCGCATATGCACATTAGCTACTCATCA----CTCACCAGTAGCGCTACTAC
CGTTTCGTTTGGGACTGGCTACGTGCCTGTTCCAAGTTACGCC-----------------------CACGAGCGGAGCGA
CCCGTGCGATCGATGAGCGAGGGCGCGCGGAACACGCGGCAGTTCCGCGGCGCGTGGAGCGGCGGCGGCGGGACGGGTGG
CATTGGCAGCGCGAGCTACCGGGATGGCGACGGCGGCATTGGGTCCCCGCGCTACAGCGGCGTCAACACGGGCATCCTGG
ACGAGCAGGTGCTGTCGCTGGTGTTCCGCTCCATCAACTGGGACCCGCAGGCGCTCTGCACGGCGGCGAGCGTCAACCGC
CGGCTCCGCGCCGTCGCGGAGCGCGTGCTCTGGCGGGAGCTCTGCATCTCGCGCGCCCCGCGGATGGTGGCGTCGCTCAC
GGCAGCCGCGGCGG------TCGGAGTCGGCGCGGCCCCGCCGCCACCGGGGCGCATTGGCGGCGGCTGGCCGGCGCTGG
CGAAGCTGCTCTCCTTCTGCTGCGGCGCCGCGGGGACGGCCGTGG------CGGTGCCGGGGCACCTCACGCGGGTGTCG
CGCTTCTCCAAGACCTCGGGGCGGAGCTTCCTGTCGCGGCGGTGCAGGAGCGACATGCTGTACGTGTCCGACCCGTGCGA
GCACGCGGTGCCCGGCGCGGACGACGACCTCGGCGCCTACCGCGGGGTGTTCCGGTGGTTCATTCGGTCGCGGACGCGGG
CCTGCCTGCTGGGCCGCCAGGCCGAGCTCGACCCGCGCGTGCGCTGCCCCTACTGCGGCGCGCGCGTCTGGAACATGGTC
GCCGCGAACCTCGTGCCGCGCGGCGCGTCGCGCCGGATGGGCTCGGATGAGGGCCGGCTCGAGTACTACGTCTGCGTCAG
CGGCCACGTCCACGGCAACTGCTGGCTCGCGCATCTTACCTCAAGTGAAGGCGAGCACGACGGCGACCCCGACTCCGACG
ACGCGTCGGGGGGTAGCAGCGGCGAGGACGGCCATGTCGCCCAGTGAGCGTGGTTGGTCCGCTACCGTGTGGTCAATTTT
CCATGGATTCTCAGCAGAGGGCTGTACCATCAGCAGTGCGGCACGTAGCTAGCTAGATCATTCGATGTAGATCAGAGGAT
GAAATGGGCGGCAGCCTCTGATCAGAGGAGTACTTATTTCTGGAGAGTACCATCTTTGCGTGCTCTGATCTCGTTTGT-G
TTCATTAATATTCTGTTGCTGCTTTGCCGGCTTTGTTTTACTCTCCTCTGTTTCCCTTCAGGCTGCTGTGTTTTTAGT--
-------------------------------------------------TATGCACCTTTGTTTACCTAGATTACTATCA
TAGTCAGTATGCTATTTTTGGAATGCTCCACGCGTGATCTCTATCACCCACACTTTATAATACACTGTACTTTTTTTAAT
GTAATGTACTTTTTTCCTTGAAACTTCCAATCTGTCCATCTTCAATTATGACACTAAAAGAATAACAGGCGCAATAAAAA
TTGCAACCATGTTCGTGGACAATCAACAATGACTACAAACATTGGAGCGAACCGAAGACAATCAACAATGACTACAAACA
TTGGAGCGAACCGAAGGCGCGCCGTCGTCATCGCCCCTTCCTCACCGGAACTGGGCAAACCTTGTTATAGTAGACTATCG
GAAAGTTGTCGTGCTAAGATCCTACAGGACCAGCGCACCAAAGTACCAATCATCGCCAATGAAGAAAGTCATAGATCGGA
AGGATCAAACCTCTAAGCACCTAAACGAAGACCAGATCCAAATAGATCCACCGAAGACCAGCACCGACCGAATCCCGCAA
GATCCGACGGAGACAAACCTTCACACACCATCCGACGATGCTAGACGCACCATCGATGCGGGGATAGAATGTAGGAGACA
TTATTCCTACTAAGAGACATCGCCGCTGTCGCCACATGGCCCCAACCAAGACGCTGACTCTAGCAAGAACGAGAACTGGG
TCCCTCCCGCCGGCGAGAGGTCGAGATACTCCGCACCTCCATGGGATAGAGGCCGTCGG
>chr3A_1
CAGTCAGAGATATCCCACACCACGCGCGGGGTGAACTTTTCCCGGCACACCTGGCGCTGCAACGGATGTCGACGTGTCCG
TCACCGGCGCAGGGCACCTGACGGCTGACCCGCCGGAAAAGCGCCCGCGGTCACCGCTGAAAAAGAACGATAAAAATGGC
AGCCGCGCACGAGGCGCTCGAAAGAGAGACCGGCTGCGCCTGG-----ACGCCCGACGCGCGTCCCCGGCCACGGCCACG
CGCCGGCCGGCGAGGCGTCTCTTCGGCGATGGACGCGCTGCAGGTCGACACGTGGGCACCTCCCGGCGCTCCCGGAGAGC
CGGCGTAG----GTGGATTAGGAAATGCGGCGACGGATTAAGTAGTGCGCTCGCTTGTCTCGCGGCAGCGTCCGTGAAGG
ATCCAAGCTTTTGATACGGACAGGCCATACAATATTGACGGACACGTATGGAAATGGCAACGGGCTGGTCGTGAGGGCGA
GATGATTGTCAGGTAGTGCCGAACAGTACCCGAGTTTGGGCAGGGGGTCGGTGGTCCTGATCGATGCACAAGCTTACTCT
AGTGCACGAGGACGCGTTGATCCAGCGTACTCCGTGAATT-GGCGTGCTTAT--TTTACTGTGGTGCTATCCAGTTGCGT
ATCTTTTGGAGGAGATGGAAA--------TTGA----CAAGATGGCTCTTGCAGTCCAGTGATCGAGACGAGCAACAAAT
TACTCTAGTCGGTCTCGGCGCCGGAGCGTGAGTGGTCCAACTGTCCAACGGGCAACGGC-------------GACACGAC
ACGGCCGGTTCGATCCTGCCCCGACACCACCCCTTCCGGGGAGCACGCAC-----------------GTCTATATAGAGG
GAGCCCGCCGCCGTCTGTCATCTCCGTCCTCGCATATGCACATTAGCTACTCATCATTCACTCACCAGTAGCGCTACTAC
CTTTTCGTTTGGGATTGGCTACGTGCCTGTTCCAAGTTAAGAG-----------------------CACGAGCGGAGCGA
CGCGTGCGATCGATGAGCGAGGGCGCGCGGAACACGCGGCAGTTCCGCGGCGCGTGGAGCGGCGGCGGCGGGACGGGTGG
CATTGGCAGCGCGAGCTACCGGGATGGCGACGGCGGCATTGGGTCCCCGCGCTACAGCGGCGTCAACACGGGGATCCTGG
ACGAGCAGGTGCTGTCGCTCGTGTTCCGCTCCATCAACTGGGACCCGCAGGCGCTCTGCACCGCGGCGAGCGTCAGCAGG
CGGCTCCGCGCCGTCGCGGAGCGCGTGCTCTGGCGGGAGCTCTGCATCTCGCGCGCGCCGCGGATGGTGGCGTCGCTCAC
GGCGGCCGCGGGGGTCGGAGTCGGAGCCGGAGCGGCCCCGCCGCCCTCGGGGCGCATTGGCGGCGGGTGGCCGGCGCTGG
CGAAGCTGCTCTCCTTCTGCTGCGGCGCCGCGGGGACGGCCGTGCCGGTGCCGGTGCCGGGGCACCTCACGCGGGTGTCG
CGCTTCTCCAAGACCTCCGGGCGGAGCTTCCTGTCGCGGCGCTGCAGGACCGACATGCTGTACGTGTCCGACCCGTGCGA
GCACGCGGTGCCCGGCGCGGACGACGACCTCGGCGCCTACCGCGGGGTGTTCCGGTGGTTCATGCGCTCGCGGACGCGGG
CTTGCCTGCTGGGCCGCCAGGCCGAGCTCGACCCGCGCGTGCGCTGCCCCTACTGCGGCGCGCGCGTCTGGAACATGGTC
GCCGCCAACCTCGTGCCGCGCGGCGCGTCGCGCCGGATGGGATCCGACGAGGGCCGGCTCGAGTACTACGTCTGCGTCAG
CGGCCACGTCCACGGCAACTGCTGGCTCGCGCATCTCACCTCGAGTGAAGGCGAACACGACGACGACCCCGACTCCCACG
ACGCGTCGGAAGGTAGCAGCGGCGACGACGGCCATGTCGCCCAGTGAGCGTAGTTGGTGGGCTACCGTGTGTTCACTTTT
CCATGGATTGTCAGCAGAGGGCTGCACCATCAGCAGTGCGGCACGTAGCTAGCTAGATCACCCGATGTCTAGCTAGATCA
CTCGATGTA----------GATCAGAGGAGTACTTATTTCTAGAGAGTACCGTCTTTGCGTGCTCTGATCTCGTTTGTAG
TTCATTAATATTCTGTTGCTGCTTTGCCGGCTTTGTTTTAATCTCCTATGTTTCCCTACAGGCCGATGTGATTT------
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>chr3D_93
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------------GGCACCTGACGGCTGACGCGCCGGAAAAGCGCCCGCGGTCACCGCCGAAAAAGAACGATAAAAGTGGC
AGCCGCGCACGAGGCGCTCGAAAGAGAGATCGGCTGCGCCTGG-----ACGCCCGACGCGCGTCCCCGGCCACGGCCACG
CGCCGGCCGGCGAGGCGCCTCTTCGGCGACGGACGCGCTGCAGGACGACACGTGTGCACCTCCTGCCGCTCCCGGAGAGC
CGGCGTAG----GTGGATTAGGAAATGCGGCGACGGATTAAGTAGTGCGCTCGCTTGTTCGGCAGCAGCGTGCGTGAACG
ACCCGAGCTTTTGAGACGGACAGGCCCTAAAATATTGACGGGCACGTATGGAAATGGCAACGGGCTGGTCGTGAGGGCGA
GATGATTGTCAGGTAGTGCCGAACAGTACCCCAGTTTGGGCAGTGGGTCGGTGGTCCTGATCGATGCACAAGCTTACTCT
AATGCACGGGGACGCGTTGATCCAGAGTACTCCGTGAATT-GGCGTGCTTATAGTTTACCGTGGCGCTATCCTGTGGCGT
ATCTTTGGGAGCAGTGAGGTGAAAGTTTCTTGA----CAAGATGACTTTTGCAGTGCAGCTAGCGAGGCCAGCAACAGAT
TACTC-GGTCT----------CGAAGCGTCAGTGGTCCAATTGTCCAACGGGCAGCCGT-------------GACACGGC
CGGTC-----CGATCCTGCCCCGACACCACCCCTTCCGGGGAGCACGCACGAAAGCGCCCGCCGCGCGTCTATATAGAGG
GAGCCCGCCGCCGCCTGTCATCTCCGTCCTCGCATATGCACGTTGGCTACTCACCAGTGGTAGTACTGC----------C
GTTTCCGGTTGCCCCTGACTACGTGCCGGTTTCGACCTTAAGTTAGCCATATCGTACGCGCAGCCACAGGAGCGGAGCGA
CGCGTGGGATCGATGAGCGAGGGCGCGCGGAACACGCGGCAGTTCCGTGGCGCGTGGAGCGGCGGCGGCGGGACGGGTGG
CATTGGCAGCGCGAGCTACTGGGATGGCGACGGCGGCATTGGGTTCCCGCGCTACAGCGGCGTCAACACGGGGATCCTGG
ACGAGCAGGTGCTGTCGCTGGTGTTCCGCTACATCAACTGGGACCCGCAGGCGCTGTGCACGGCGGCGAGCGTCAGCAGG
CGGCTCCACGCCGTCGCGGAGCGCGTGCTCTGGCGGGAGCTCTGCATCTCGCGCGCGCCGCGGATGGTGGCGTCGCTCAC
GGCGGCCGCGGGGGCGGGCGTGGGAGGAATAGCGCCCCCGCCGCCTCCGGGGCGCATTGGCGGCGGGTGGCCGGCGCTGG
CGAAGCTGCTCTCCTTCTGCTGCGGCGCGGCGGGGACGGCCGTGCCGGTGCCGGTGCCGGGGCACCTCACGCGGGTGTCG
CGCTTCTCCAAGACCTCCGGGAGGAGCTTCCTGTCGCGGCGCTGCAGGAGCGACATGCTGTACGTGTCCGACCCGTGCGA
GCACGCGGTGCCCGGCGCGGACGACGACCTCGGCGCCTACCGCGGGGTGTTCCGGTGGTTCATGCGGTCGCGGACGCGGG
CCTGCCTGCTGGGCCGCCAGGCCGAGCTCGACCCGCGCGTGCGCTGCCCCTACTGCGGCGCGCGCGTCTGGAACATGGTC
ACCGCCAACCTCGTGCCGCGCGGCGCGTCGCGCCGGATGGGCTCGGACGTGGGCCGGCTCGAGTACTACGTCTGCGTTAG
CGGCCACGTCCACGGCAACTGCTGGCTCGCGCATCTCACCTCAAGTGACGGCGAGCACGA---------CGACTCCGACG
AGGCGTCGGGAGGTAGCAGCGGCGAGGACGGCCATGTCGCCCCGTGAGCGTGGTTGGTCCGCAACCGTTTGGTCAATTTT
CCATGGATTCTCAGCAGAGGGCTGTACCATCAGCAGTGCGGCACGTAGCTAGCTAGATTACTCGATGTAGATCAGAGGTT
----------GCAGCCTCTGATCAGAGGAGTACTTATTTCTAGAGAGTACCGTCTTCGCGTGCTCTGATCTCGTTTTT-G
GTTCATAATATTCAGTTGCTGCTTTGCCGGCTTTGTTTTAATCTCCTCTGTTTCCCTTCAGGCCGATGTGTTTTGACTCC
AATTAGTACTCCAGTGTCCACTGGTCGTCTTTATTGACGGCGAGATGTATATGCACCTTTGTTAACCTAGATGACCATCA
TAGTCAGTATGCTATTTTTGGAATGCTCCACGCGTGCTCTATCTTACCCGCACTTT------------------------
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>SNPs
--------S----------------------S-S----------S----------------S----S----S-------S
--S-----S--------------S--------------------------------------------------------
-------------------------------------------SSSSS--------------------------------
------------------------S-------------------S-----------------S-----------------
--------SSSS--------------------------------------------------------------------
-----------------------------------S--------------------------------------------
------------------------------------------------------------------------S-------
--------------------------------------S-S----------------------------------S----
--------------S--S--------------SSSSS----------------S--------------------------
---SSS-----------------------------------------------------SSSSSSSSSSSSS-------S
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-S-------------------------------------S-SS-------------------------------------
-S------------------------------------------------------------------------------
------------------------------------------------------------------------S-------
---------------------------------------------------------------------------S-S-S
--------------------------------------------------------S-----------------------
---S-------S--------------S---S--------------S--------------------S-------------
--------------------------------------------S-----------------------------------
-----------------S-----------------------S--------------------------------------
---------------------------------------------------------------S----------------
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-----S-----------------------------------------S--------------------------------
------------------------------------S-------------------------S-----------------
----------S---------------------------------------------------------------------
------------------------------------------------------------S-----------------S-
SSSSSS-SSS-------------------------------S---------S----------------------------
----------------------------------------S----------------------S-S--------S-S---
---------------------------------------------------------------S--------S--S----
------------------------------------S---S-S-S----S------SSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1002
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----------------------GTGCCTGTTCCAAGTTACGC--------------------------------------
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>reverse_2804
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---CCGACGGAGACAAACCTTCA---------------------------------------------------------
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