>input_sequence_65817
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-----------------------------------------------------ATGGAGAGCGACGGCGAGGTCGACGTG
CCGCTCAAGATCGACGGGGACGTAGCGGCCGGGGCGCGCGCCGTTAG---GGGGCCGCCGGTTCGCCGGGTGCTGTACGC
ACCAGAAGGGCGGTTCCTTGGGCCGGGACGGCGGATCGCCTACGAGGGGAACACGGTCGGCCTCCTGAGCGTC------G
CCGCCGTGGTGCCGCCGCCCGATGATCTACCGGCCGCCGATAGCCAAGGACAAGGAGGTGG---------TAAGCAGATC
TTGGTGCTCTACCGCTACACCCATTTCTCGGCGGTCCCCGACGGCG------TGGAGGTGTGCGGCAGCACGAAGCTGCA
CTATCTCCGGTTCGCCGTCCCGGCCGCCGCGTCGCCGGCGTGCTCGCTGCGGTGGGCCTGGTCGTCCCTGGCGCCGCTGA
TATACCCCTCCTGCCAGAGCAACGACCTCCAGGCCCTTTGGCCCAGGTTGTTCTCCAGCGACGGTAGAAATGGCATCCCG
CTGAAGGCCACGCGTGTCAAGCTGATCGCTGATGTCGGCATCCTCCGGCGTGAGGACTACACGCAGGAACGCATGCGCGA
CGTGTCCACCGCGCTGCAGGACATGGTAGAGGAGCCATGGCCCGGGTACCATGTCGGCATGGAGTTGCGCCTGCCGGAGC
ACGTGCA------TTGCGCTTGCGCGGACGAAGCTGAGGCCGCCGACGGCGAGGCCACGG------------ACTGCGAG
CGGCCGGCAAAGCGAGGGAAGTTCGTCGCGGAAAG---------------GTGCCCCATCTGCTTCGAGCTGCTCAAGAG
CGACGTCGCCGTGTGGCCCGGGTGCCTCCGGCCCCACGTCTTCCATGGCGCGTGCCTCGTGCAAGCCCTCAAGAGGAGCG
AGACGTGCCCTCTCTGCAGGCGCAGGCTGTCGGCTCCGGATGAACTAGTCTAG---------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------
>chr1D_1_TraesCS1D01G322200
TCAATCATTCTTTACGTGACCTTTAATCTCCGGAAGGGAACCCAAGTCTCAGTCTACTTATGAAACCACCGTAGATCCAC
CAACATTAAGCAAGCGTCCACCTTCCTACACAAACTTCTCTTTGAAATGAAAACGAATTGCACGGCACTATTTTGGGTCC
AATCTTGTCTATATCCTAGTACCACAAAAAGTACTTAGGGTACGGAACCGTACCAGGATCATGACTAAATGC----GATG
ATGATGATAGAGACAAAGTCAAACCTTTAAATCACTGCCATGTGTGTAGTACT-ATGGTTTGTTGACCTCGGTTGCCCTC
GGCCGCCACCACCGCCAGCTCCAAGAAAGCAATGCCGTGCATACCGAGACTAGCCACGCCGCCACCGCGAAGTTGAAGCC
ACTCGGCTACCGCTCGTAGAGCTAG---TGTTAGGGTTTGGGATGGAATGCGGAAATTGCAGCCCGCGCCGTTTTGGTCG
GGTGCGGACGCGCGCGTATACCATTTTGGCTG-GGCGCATAGCATTATGTGAAATGT-----GTACGCGTTGATGAAACC
GGTTTGACTATGCCGCGA--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------TAAGATCTAAAGCCTGTTTTAGGAGTTATTAAAGG-ACGGAGATTTTTCATTGAAAAAAA
ATGAAAGATGAAAGTCGCATCTCTTGG---------------------AAAGAATTCGGACGAAAAATGCACCTTACCCA
ATTACGAAAGGAAAGATAATAAATACGAGC--TGCGCTGTACTGGTAATTAAGCACTTCTGCCATTTTGGT------TTT
GGTTTTGGTTTTGGTTTCTTTCTAGTAGTATTTTTCTCTTGCATTAATA-----CTATCCGAATCCGACATGTGTTTCTT
TCCTCTTTGCGTAAGGGAACGCGCTTCGAGTCTAATTCACTTCCCGCTCTTTTGAATTGACGGACGCGAGTCCATAAAAG
GCGAGGGGGAGAGCCAACATGTTCACTTCAATCCCCACCTTGCGCTGTCCGCCAGAA-----------------------
------------------CCC-GATCACAGTCCACGACGGTGCTGAGCGGTCGATGGAGAGCGACGGCGAGGTCGACGTG
CCGCTCAAGATCGACGGGGACGTAGCGGCCGGGGCGCGCGCCGTTAG---GGGGCCGCCGGTTCGCCGGGTGCTGTACGC
ACCAGAAGGGCGGTTCCTTGGGCCGGGACGGCGGATCGCCTACGAGGGGAACACGGTCGGCCTCCTGAGCGTC------G
CCGCCGTGGTGCCGCCGCCCGATGATCTACCGGCCGCCGATAGCCAAGGACAAGGAGGTGG---------TAAGCAGATC
TTGGTGCTCTACCGCTACACCCATTTCTCGGCGGTCCCCGACGGCG------TGGAGGTGTGCGGCAGCACGAAGCTGCA
CTATCTCCGGTTCGCCGTCCCGGCCGCCGCGTCGCCGGCGTGCTCGCTGCGGTGGGCCTGGTCGTCCCTGGCGCCGCTGA
TATACCCCTCCTGCCAGAGCAACGACCTCCAGGCCCTTTGGCCCAGGTTGTTCTCCAGCGACGGTAGAAATGGCATCCCG
CTGAAGGCCACGCGTGTCAAGCTGATCGCTGATGTCGGCATCCTCCGGCGTGAGGACTACACGCAGGAACGCATGCGCGA
CGTGTCCACCGCGCTGCAGGACATGGTAGAGGAGCCATGGCCCGGGTACCATGTCGGCATGGAGTTGCGCCTGCCGGAGC
ACGTGCA------TTGCGCTTGCGCGGACGAAGCTGAGGCCGCCGACGGCGAGGCCACGG------------ACTGCGAG
CGGCCGGCAAAGCGAGGGAAGTTCGTCGCGGAAAG---------------GTGCCCCATCTGCTTCGAGCTGCTCAAGAG
CGACGTCGCCGTGTGGCCCGGGTGCCTCCGGCCCCACGTCTTCCATGGCGCGTGCCTCGTGCAAGCCCTCAAGAGGAGCG
AGACGTGCCCTCTCTGCAGGCGCAGGCTGTCGGCTCCGGATGAACTAGTCTAGGCCA-----------------------
------------AAGTCAGGAGCAAC-------------------------------------------CTTCAGATTCA
TGGATTA---TATATGCCGGCTAGTTCTGTTCTGTTTTAAAAGGATTGCATTGTTTAGATTCATGAATTATTATGACTGT
TCTTGGATTGTATTTGGA-TTTTGGATCGAAGATATTACTTGTAAGAAATTCCTGGGTTTAATCAATGGAGAAATGCATG
TTGAGATATGC------------------------------------------------AGTTATGCATCGATTTTTCTT
TTATTACTTCTGTGGTGATGATGCAAGGAGCATTGCAGCTTTAAGTTTTACACTCAAGTATAAGGAAGTAGCTCTGCATG
AATAAACGCTACCTAGTTC----AGCGGTCGAGCATCATGTTCAAAGCCTGTCAGTGTCACCTTAATTTGCAACATTACA
TAC-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------AC--TGATACACACAATGCACAACCTTCGGTATATTTGCAGCCCTGGAAACATACAAAG
TAAGAATGTAGACATATACAGCCCCGTTAATCTATTACATGTGCCGTAAATCTGTATCAGAGAATCGTTACAAGACGCAA
GTCGAGGTCTCACACCTAAGCTCCAGAACTCGTTGAAGAAATAACACTCGATATCCATGACTTATTATGCCTCGATGTCT
ACAACTGTTAAGGTGATTTTCTTCCATACAACATGAA-------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------CAGTGTGCCCATCTTCAAA
GCAAAATCTTAATCTCAATCGAAGGTGGTCCGTGGTAAAGAAGAACAATGTGCTTGAAGCTTCGCAAACCCAAATCATTC
ACATGACCTATGTTGGGTGCATCCCATCGTATGCAAAATGATACAACCTAACTTTATTCACGGATGATATATGGCCCACT
TATATCAGGCTTAGCAATCATTCTAAACATGTGACTTGCCGT-AAAA-TACTTGCCATGAACGTTTGCCATTTATATCTG
ATT-TTTCATTGTTCTACCAACCTCATCTACAAGTTGTAGTGTATGACATTTGGTATCATCTTGCCATGAACTTGTATTA
CTCATGTTAA-----CTGCAAATAAGGCTAGTGATAGTT-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------
>chr1B_2
-CAATCATCCTTTGCATGACCTTTAATCTTAGGAAGGGAACCCAAGTCTCGGTCTACTTCTGAAACCGCCGCAAATCCAC
CAACATTAAGCAAGCGACCACCTTCCTACACAAACTTAACTTT-AAGTGAAAACGAATTGCAAGGCACTATTTTCGGTCC
AAGCTTG----TATCCTAGTACCACAAAAAGTACTTAGGACATGGAACCGTACCTGGATCTTGAGCTAAACGCGATGATG
ATGATGATAGAGACAAAGTCAAACCTTTAAATCACCGCCATGTCTGTAGTACT-ATGGTTTGTTGACCTTGGTTGCCCTC
GGCCGCCACCACCGCCGGCTCCAAGAAAGCAATGCCGTGCATACTGAGCCTAGCCACGCCACCACCGCGAAGTTGAAGCC
ACTCGGCTACCGCTCGTAGAGCTAGTGTTGTTAGGGTTTGGGATGGAATGCGGAAATTTCAGCCCACACCGTTTTGGTCG
GGTGCGGGCGCGCGTATATACCATTTTGGCTG-GGCGCATAGCATTATGTGAAATGT-----GTATGTGTTGATGAAACC
GGTTTGACTATGCCGCGA--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------TAAGATCTAAACCCTGTTTTAGGAGTTATTAAAGG-ACGGAGATTTTTCATTG-AAAAAA
ATGAGAGACGAAAGTCGCATCTCTTGG---------------------AAAGAATT------------------------
-----GAAAGGAAAGATAATAAATACGAGC--TGCGCTGTACTGGTAATTAAGCACTTCT-------------GCCATTT
TGTTTTGGTTTTGGTTTCTTTCTA-------TTTTCTCTTGCATTAATACAATACTATCCGAATCCGACATGTGTTTCTT
TCCTCTTTGCGTAAGGGAACGCGCTTCGAGTCCAATTCACTTCCCCACCT--------------CGCGAGTCCATAAAAG
GCGAGGGGGAGAGCCAACATGTTCACTTCAATCCCCACCTTGCGCTGTCCGCCAGAA-----------------------
------------------CCCCGATCACGGTCCACGACGGTGCTGAGCGATCGATGGAGAGCGACGGCGAGGTCGAAGTG
CCGCTCAAGATCGACGGGGACGTAGAGGCCGGGGCGCGCACCGTTTG---GGGGCCGCCGGTTCGCCGGGTGCTGTACGC
ACCTGAAGGGCGGTTCCTTGGGCCGCGACGGCGGATCGCCTACGCGGGGAACACGGTCGGCCTCCTGAGCGTC------G
CCGCCGTGGTGCCGCCGCCGGGTGATCTACCGGCCGCTGATAGCCAAGGACAAGGAGGAGG---------TAAGCAGATC
TTGGTGCTCTACCGCTACACCCATTTCTCGGCGGTCCCCGACGGCG------TGGAGGTCTGCGGGAGCACGAAGCTGCA
CTATCTCCGGTTCGCCGTCCCGGCCGCCGCGTCGCCGGCGGGCTCGCTGCGGTGGGCCTGGTCGTCCCTGGCGCCGCTGA
TATACCCCTCTTGCCAGAGCAGCGAGCTCCAGGCCCTTTGGCCCAGGATGATCTCGAGCGATGGTAGCAATGGCATCCCG
CTGAAGGCCACGCGTGTCAAGTTGATCGCTGACGTCGGCATCCTCCGGCGTGAGGACTACACGCAGAAACGCATGAGCGA
CGTGTCCACCGCGCTGCAGGACATGGTAGAGGAGCCATGGCCCGGGTACCATGTCGGCATGGAGTTGCGCCTGCCGGAGC
CCGTGCACGTGCCTTGCGCTTGCGCGGACGAAGCAGAGGCCGCCGACGGCGAGGACACGG------------ACTGCGAG
CGGCCGGCAAAGCGAGGGAAGTTCGTCGAAGAAAG---------------CTGCCCCATCTGCTTCGAGCTGCTCAAGAG
CGACGTCGCCGTGTGGTCCGGGTGCCTCCTGCCCCACGTCTTCCATGGCGAATGCCTCGTGCTCGCCCTCAAGGAGAGCG
AGATGTGCCCTCTCTGCAGGCGCAGGCTGTCGGCTCCGGATGAACAAGTCTAGGCCA-----------------------
------------AAGTCAGGAGCATTCTTTATCAGATTTGTTATTAG-TTTTGTTTGAAGGACTGGATTCTTCAGATTCA
TGGATTA---TATATGCCGGCCGGTTCTGTTCTGTTTTAAAAGGATTGCATTGTTTAGATTCATGAATTATTGTGACTGT
TCTTGGATTGTATTTGGA-TTTTGGATCGAATATATTACTTGTAAAAAATTCCTGGCTTTAATCAATGGAGAAATGCATG
TTTTGAGATATGCAGTTGTGCATCGATTTTTTTTTAAATTTTTTGGTGATGATGCAAAGAG-------------------
------------------------------CATTGCAGTTTTATCTTTTACGCTCAAGTATAAG-AAGTAGCTAAGGATG
AATAAACGGTAGCTAGTTCAGCTAGCGGTCGAGCATCGTGTTCAAAGCCTGTC-GTGTCATCTTAGTTTGCAACATTACA
TAC-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------ACACTGATACACACAATGCACAACAGTGGGTACATTTGCAGCCCTGGCAACATACTAAC
GAAGAATGTAAACATATAC-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------
>chr1B_2
-CAATGATCCTTTAGGTGACCTTTAATCTCAGGA---------AAGTCTCGGTCTACTTCCGGAACCGCTGCAGATCCAC
CAACATTAAGCAAGCGACCACCTTCCTACACAAACTTCTTTGTGAAATGAAAGCGAATTGCAACGCACCGTTTTGGGTCC
AACCTTG----TATCCTAATACCACAAAAAGTTCTTAGGACACGGAAGCGTACCAAGATCTTGAGGTAAACACA---ATG
GTGATGATAGAGACAAAGTCAAACCTTTAAATCACTGTCACGTGTGTAGT---GATGGTTTGGTGACATAGGCTACTCTC
TGCCGCCACCACTGTCAGCTCCAAGAAACCAGTGATGCATATACTGAGTCTAGCCGCGCCGCTACCGCGAAGTTGAAGCC
ACTCGGGTACCGCTCGTAGAGCTTG---TGTTAGCGTTCGGGAGGGAGTGTGGAAACATCAATGCGCACCGCTTTGGTCG
GGCGCGGGCGTGTGCATATACCATTTTGGCTGAGGCGCATAGTATCACGTGAAATGCAACGCGTACGTGTCAAAGAAACC
GGTTTGACCATGCCATATACTTCCTCCGTTTCTAAATATTTGTCTTTCTAGAGATGTCAACAAGTGACTAAATACGGAGC
AAAATGAGTGAATCTACAATTTAAAATATGTCTATATACATCCGTATGTGGTAGTTCATTTAAAATGTCTAGAAAGATAA
ATATTTAGAAACGGAGGAAGTATGATCTAAACTCGGCATTAGGAGTT-----------GAAGATTTCACTGAA-AAAGAA
TTGAAAGACGAAGCCACATCTCTTGAAAAGAAGACGGACGACCAAAAAATAGGAAA------------------------
-----GAAGGAAAGGGTAATAAATACGAGTTATGCGCTGTACTGGTAATTAAGTATTTCTACCTGTCACACTAGCCATTT
TGTTTTGGTTTTGGTTTCTTTCTA-------TTTTCTCTTGCATTAATA-----CTATCCAAACCCGACATTGGTAT-TT
TCATCTTTGCGTAAG-GAACGCGCTTTGAGTCTAATTCACTTCCCGCTTTTTTGAATT----GACGAGAGTCCATAAAAA
GGCGAGGAGAG------------------------CATCTTGCACCGTCCGCCAGAAACTCCACCTGCAAGATCACGCCG
CTGTCTATCGGCCGAGAAACCCGATCATGGTCCACGACGGTGCTGACTGATCGATG------------GAGGTCGACGTG
CCGCTCAAGATCGACGGGGACGTAGCGGCCGGGGCGCGCGCCGTTTG---GGGGCCGCCGGTTGACCGGGTGCTGTATGC
ACCCGAAGGGCGGTTCCTTGGGCCGGGACGGCGAACCGCCTACGCGGGGAACACGGTCGGCCTCCTGAGCGTC------G
CCGCCGTGGTGCCGCCGCCTGATGATCCACCGGCCGCTGATGGCCAAGGACAAGGAGGAGG---------TAAGCAGATC
TTGGTGCTCTACCGCTACACCCATTTCTCGGCGGTCCACGACGGCG------TGGAGGTCTGCGGCAGCACGAAGCTGCA
CTATCTCCGCTTCGCCGTCCCGGCCGCCGCGTCGCCAGCGTGCTCGCTGCGGTGGGCCTGGTCGTCCCTGGCGCCGCTGA
TATACCCCTCCTGCCAGAGCAACGAGCTCCAGGCCCTTTGGCCCAGGTTGCTCTCCAGCGACGGTAGCAATGGCGTCCCG
CTGAAGGCCACGCGTGTCAAGGTGATCGCTGACGTCGGCATCCTCCGGCGTGAGGACTACACGCAGGAACGGATGCGCGA
CGTGTCCACCGCGCTGCAGGACATGGTAGAGGAGCCATGGCCCGGGTACCATATCGGCATGGAGTTGCGCCTGCCGGAGC
ACGTGCA------TTGCGCTTGCGCGGACGAAGCTGAGGCCGCCGACGGCGAGGACACGG------------ACTGCGAG
CGGCCGGCAAAGCGAGGGAAGTTCGTCGAAGAAAG---------------CTGCCCCATCTGCTTCGAGCTGCTCAAGAG
CGACGTCGCCGTGTGGCCCGGGTGCCTCCTGCCCCACGTCTTCCATGGCGAGTGCCTCGTGCTCGCCCTCCAGGCGAGCG
AGATGTGCCCTCTCTGCAGGCGCAGGCTGTCGGCTCCGGATGAACAGGTTTAGGGAAGAACGTGCCTTCGTCCTGCTCCT
GCATGCAACCTGAAGCCAGGAGCATTCTTTATCAGATTTATTACTTATTTTTGTTTGAAGGGCTGCATTCTTCAGATTCA
TAGATTATACTATATGCCGGCCGGTTCTGATTTAAAACA----------ATTGTTTAGATTCATGAATTATTATGCCTGC
TC-TGGATTGTATTTGGAATTTTGGATCGAAGATATTACTTGTAAGAAATTCCTGTCTCTAATCAATGGAGAAATGCATG
TTGACATATGC------------------------------------------------AG-------------------
------------------------------AAATGCAGTTTTAAGTTTTACACTCAAGTATAAG-AAGTGGGTCTGGATG
AATAAACGCCAGCTAGTTC----AGCGGGCGAGCATCATGTTAAAAGCCTGTCAGTCTCACCTTAGTTTGCAACATTACT
CCCTCCGTTTCTTTTTAGTCTGCATATATAAGGTTTGGTCAAAGTCAAGCTTTGCATAGTTTGACTAACTTTATATTAAA
AATATCAACATTCACGATATGAAATCAACATTTTCAGATGCACCATGAAATGTATTTTCATATTATATAGTTTAAGTATT
GTAGATGTTCATATTTTTTAATATGAATTTGGTCAAACTTTGTGTAGTTTGACTTTGACCAAAACTTATACGCGGAGTAA
AAAGAAACGGAGGGAGTACATACACTGATACACACAATGCACAACCGTCGGTATATTTGCAGCCCTGGAAACATACAAAG
TAAGAATGTACACATATACAGCCCCGTTAATCTATTACATGTGCCGTAA-TCTGTATCAGCCAATCGCTACAAGACGCAA
GTCGAGGTCTCACACCTAACCTCCAGAACTCGTTGAAGAAATATCACTCGATATCCATGACT---TCAGCCTCGATGTCT
ACGACCTTTAAGTTGATTCGGAAAGGTGCGATAGCACCCGGGAGTCCAGGCACCCCCTTATCTGTCCGTTCACTGGTTTT
AAGATTTGTGCCGTGGCCTAGCGAGCAGCAGGCCTTTACCAGTGTCAGGAAAGATTCATGCACTTTGCAGAGTATGTGAA
CAGTGATCCATGCAGCCGTGTGGGACCGATTCCTTTTCTCTCGTGTGATCCATGTTGTAGCCAATGTGCCCATCTTCCAA
GCAAAACCTTAATGTCAATCGAAGGTGGTCCGTGGTGAAGAAGAACAATGTGCTTGAAGCCTCG-AAACCCAAATCATTG
ACATGACCTATGTTGGGTGCATCTCATCTTATGCAGAATGATACAACCTAACTTCATTCACGGATGATATATGGCCCACT
TATATCAGGCTTAGCAATCATTCTAAACATGTGACCTGCCGT-AAAAATACTTGCCATGAACGTATGCCATTTATATCCG
ATT-TT-CATTGTTTTCCCAACCTCATCTACAAGTTCTAGTGTATGACATTTGGTATCATCTTGCCATGAACTTGTATTA
CTCATGTTAACCGATCTCCAAAGAAGGTTAGTGATAGTTTGGCAAATTTTGCTATAATGGAAGGTAGAACCATGACTTGG
ATTGGGTTTGGCCCTCCAATTGCAGTCGAGCTAGAACTCACTGATTGTAATAACTTCCTGGTTGAGTAATACAAGTTTTT
CACTCGCAAAAAAATAAAATCATGCCAGTGTCACCCTGCTTTGCAACATTACATACACTGATACACATAATGCACAACGG
TGGGTATACTTGCAGCCCTTACAACATACTAAGTACTAAGAATGTAAATATATACAACCTTGTTAAT
>chr1A_3
--AATCATCCTTTACACGACCTTTAATCTTAGGAAGGGAAGCCAAGTCTCGGTCTACTTCTGAAACCGCCGCAGATCCAC
CAACATTAAGGAAGCGACCACCTTCCGACACAAACTTCTCTTTGAAATGAAAACAAATTTCAAGGCACTATTTTGGGTCC
AATCTTGTCTATATCCTAGTACCACAAAACATACTTAGGGCACGGAACCGTACCAGGATCATGACTAAATGC----GATG
ATGATGATAGAGACAAAGTCAAACCTTTAAATCATCGACATGTGTGTAGTACGGATGGTTTGTTGACCTTGGTTGCTCTC
GGCCGGCACCACCGCCAGCTCCAAGAAAGCAATGCCGTGCATACCGGGCCTAGCCGCGCCGTCACCGCGAAGTTGAAGCC
ACTCGGCTACCGCTCGTAGAGCTAGTGTTGTTAGGGTTTGGGATGGAATGCCGAAATTTCAGCCGGCACCGTTTTGGTCC
GGTGCGGGCGCGCGCGTATACCATTTTGGCTG-GGCGCATAGCATTATGTGAAATGT-----GTATGTGTTGATGAAACC
GGTTTAACTATGCCGCGA--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------TAAGATCTAAACCCTGTTTTAGGAGTTATTAAAGGGACGAAGATTTTTCATTG-AAAAAA
ATGAGAGACGAAAGTCGCTTCTCTTGG---------------------AAAGAATT------------------------
-----GAAAGGAAAGACAATAAATACGAGC--TGCGCTGTACTGGTAATTAAGCACTTCT-------------GCCATTT
TATTTTGGTTTTGGTTTCTTTCTA-------TTTTCTCTTGCATTAATA-----CTATCCGAATCCGACATGTGTTTCTT
TCCTC------------------CTTCGAGTCAAACTCACTTCCCGCTCTCTGGAATT----CAGGCGAGTCCATAAAAG
GCGAGGGGGAGAGCCACCATGG-----TCAATCCCCACCTCGCGCCGTCCGCCAGAA-----------------------
------------------ACCCGATCACGGTCCACGACGGTGCTGAGCGATCGATGGAGAGCGATGGCGAGGTCGAAGTG
CCGCTCAAGATCGACGGGGACGTAGCGGCCGGGGCGCGCGCCGTTAG---CGGGCAGCCGGTTCGCCGGGTGCTGTACGC
ACCCGAAGGGCGGTTCCTTGGGCCGGGACGGCGGATCGCCTACGCGGGGAACACGGTCGGCCTCCTGAGCGTC------G
CCGCCGTGGTGCCGCCGCCGGATGATCTACCGGCCGCTGATAGCCAAGGACAAGGAGGAGG---------TAAGCAGATC
TTGGTGCTCTACCG---------TTTCTCGGCGGTCCCCGACGGCG------TGGAGGTCTGCGGGAGCACGAAGCTGCA
CTATCTCCGGTTTGCCGTCCCGGCCGCCGCGTCGCCGGCGTGCTCGCTGCCGTGGGCCTGGTCGTCCCTGGCGCCGCTGA
TATACCCCTCCTGCCAGAGCAGCGACCTCCAGGCCCTTTGGCCCAGGTTGTTCTCCAGCGACGGTAGAAATGGCATCCCG
CTGAAGGCCACGCGTGTCAAGCTGATCGCTGACGTCGGCATCCTCCAGCGTGAGGACTACACGCAGGAACGCATGCGTGG
CGTGTCCACCGCGCTGCAGGACATGGCAGAGGAGCCATGGCCCGGGTACCATGTCGGCATGGAGTTGCGCCTGCCGGAGC
CCGTGCACGTGCACTGCGCTTGCGCGGAGCAAGCTGAGGCCGCCGACGGCGAGGACACGG------------ACTGCGAG
CGGCCGGCAAAGCGAGGGAAGTTCGTCGCAGAAAG---------------GTGCCCCATCTGCTTCGAGCTGCTCAAGAG
CGACATCGCCGTGTGGCCCGGGTGCCTCCGGCCCCACGTCTTCCATGGCGAGTGCCTCTTGCTCGCCCTCAAGGCGAGCG
AGATGTGCCCTCTCTGCAGGCGCAGACTGTCGGCTCCGGATGAACAGGTCTAGGGAAGAACGTGCCTTCGTCCTGCTCCT
GCATGCAACCTGAAGTCAGGAGCATTCTTTATCAGATTTATTCCAA--TTTTCTTTGAAGGACTGCATTCTTCAGATTCA
TAGATTA---TATATGCCGGCCGGTTCTGTTTTAAAACAG----------TTGTTTAGATTCATGAATTATTATGCCTGC
TATGTAATG------------------------------TTGTAAGAAATTCCTGGCTTTACTCAATGGAGAAATGCATG
TTGAGA---------------------TTTTTTTTTACTTTTGTGAAGATGATGCAAGGAG-------------------
------------------------------CATTGCAG-TTTAAGATTTACACTCAAGTATAAG-AAGTAGCTCTGGATG
AATAAGCGGCAGCTAGTTC----AGCGGGCGAGCATCATGTTCCAAGCCTGTCAGTTTCACCTTAGTTTGCAACATTACA
TAC-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------AC--TG---------ATGCACAACCGTGGGTAAATCTGCAGCCCTGGAAGCATACAAAG
TAAGAATGTAAACATATACAGCCCTGTTAATCTATTACATGTGCCGTAAATCTGTATCAGCCAATCGTTACAAGACGCAA
GTCGAGGTCTCACACCTAAGCTCCAGAACTCGTTGAAGAAATAACACTCGATATCCATGACT---TAAGCCTCGATGTCT
ACAACTGTTAAGGTGATTTTCTTCCATACAACATGAA-------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------CAACGTGCCCATCTTCCAA
GCAAAACCTTAATCTCAATAGAAGGTGGTCCGTGGTGAAAAAGAAAAATGTGCTTGAAGCTTCG-AAACCCAAATCATTC
ACATGACCTATGTTGGGTGCATCCCATCGTATGCAGAATGATACAACCTAACTTCATTCACGGATGATATATGGCCCGCT
TGTATCAGGCTTAGCAATCATTCTAAACATGTGACCTGCCGTAAAAAATACTTGCCATGAACGTATGTCATTTATATCTG
ATTTTT-CATTGTTCTCCCAACCTCCTCTACAAGTTGTAGTGTATGACATTT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------
>chr1D_1003
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------GGACAGCGACGACGACGTCGACGTG
CCGCTGAAGATCGATCGAGTCGTAGCAGCCGGGGCGAGTGGTGTCAGGGACGGGCCGCCGCTGCTCCAGAGGCTGCACGT
ACCCGAAGGGCGATTCCTTGGGCCGGCGCCGCGGTTCGCCTCCGCGGGCAACACGGCCGGCTTCCTGGGCGTC------G
CCGTCGTGGTGCCGCCGCCTGATCGC---CCGGCCGCCGGCAGCAAAGAACA---AGGAGGAGGCAAGGACAAGGAGATC
TTGGTGCTCAACCGCTACACCGAGTTTGAGCCGGCGCCCGGCGGTCTGGAGCTGGAGGTGTCCAAGAAAACGAAGCTGCA
CTATCTCCGGTTCGCCGTCCCGCCGGCCGGTGACGCGGCGGGCTCGCTTCGGTGGGCCGGGTCGTCGCTGGCGCCGCTGA
TATACCCCGCCCACCACAGCAGCGAGCTCTAGGCCCTTTGGTCCACGCTGGTCTCGAACGTG---------GGCATCCCG
CCGGGGACGACGCGTCTCAAGTTGATCGCCGACGTCGGCATCCTCCGGCTCGAGTACCACACGCGGGGCCGCATGGATCA
GGTGAGCGCCGCGCTGCAGGGCATGGTAGCGAAGCCATGGCCCGGGTACCATGTCGCCATGGACTTGCGCCTGCCGAAGC
TCGTGCACGTGCAGCA------CGCGGACGAAGCTGAAGCCACCGATGGCGAGGACATGG------------GCTGCGAG
CGGCCGGCGAAGCGGAGGAAGGTCGTCGCGGAGGAGGTCGCCGGGCAAGAGTGCCCCGTCTGCTTCGAGCTGCTGGAGAA
CGACGTCGCCGTGTGGCCGGGGTGTTCCTTGCCCCACGTCTTCCATTGCGCGTGCCTGAAGCTCACCCTGACAGGGAGCG
AGCTGTGCCCGCTCTGCAGGCACAGGCTGTC-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------
>chr1B_1111
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------AGGGCGGTTCCTCGGCCCGGCACCACAGTTCGCCTCCGCCGGGATCACGGCCGGCTACCTGCGTGTCCGTGTGG
CCGTCGTAGTGCCGCCGGCTGATCGC---CCGGCCGCCAGTAGCCAAGACAA---AGGAGG---------CAAGGAGATC
TTGGTGCTCTACCGCTACACCCACTTCTCCGCGGTGCCCGGCGGCG------TGGAGGTGTGCAAGAGCACGAAGCTGCA
CGAGCTACGGTTCGCCGTCCCGCCCGCCGGCGACGCGGCGGGATCGCTGATGTGGGCCGGGTCCTCGCTGGCGCCGCTGA
TATACCCCGCCCACCACACCAAGGCGCTGCAGGCCCTGTGGTCGAGGCTGGTCTCGCAGGTG---------AGCGTCCCG
CCGGAGGCCACGCGCGTCCATGTGATCGCCGACGTCGGCATCCTCCGGCGCGAGGACTACACGCGGAGGCGCATGGAGCG
CGTGCGCGCCGCGCTGGCGGGTATGATGGCGGAGCCGTGGCCCGGGTACCACGTCGCCATGGAGCTGCGTCTGCCGGAGC
CCGTGCACATGCAG------TGCGCGGATGAAGCTGAAACCGTCGGCGGCGAGGACACGGAGTACTGCGAGGAGTGCGAG
CGGCCGAAGAAACGGAGGAAGATCGTCACGGAGGAGGGCGCCGGGCAGGAGTGCCCCGTCTGCTTCGAGCCGCTGGAGAA
CGACGCCGCCGCGTGGCCCGGGTGCTCATTGCCCCACGTCTTCCATGGCGCGTGCCTTGAGGAGACGCTCAAGGAGAGCG
AGAAGTGCCCCATCTGCAGGCGTAGGCTGTCGTCTCTGGATGAACAGGTCTAGG--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------------------
>SNPs
S-------S---------------------S-------------------S--------S-------S---S--------
----------------S---------------------------------------------S-----------------
----------------------------------------S---------------------------------------
---------------------------------------------------------------------S----------
------------------------------------------------S-------------------------------
----------------------------------------------------------S--------S------------
-------S-----------------------------------------------------------S------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------S-----------------------------------------S------
--------S-----------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSS
SSSSS-------------------------------------------------------S--SS-SSSSS---------
S-----------------------SSSSSSS-------------------------------------------------
----------------------------------------------------------SSSS------------------
--------------------------------------------------------------------------------
----------------------------S--------------------S------------------------------
--------------------------------------------------------------------------------
---S----------------------------------------S-----------------------------------
-------------------S--------------------------------------S---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------S-----------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------S-------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------S---------S------
---S-----------------------------------------S----------------------------------
------------------------SS------------------------------------------------------
---------------------SS---------------------------------------------------------
--------------------------------------------------------S-----------------------
-------------------------------------------------------------SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S-------------------------S-----------S---
-----------S-----------------------------------------------------S--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------S---------------------------------
----------S-------------------------------------------------SS------------------
--------------------------------------------------------------SSS--S------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------S-------------S--
------S-----------------------------S---------------------------S---------------
-----------------------------------S------------------S-------------------------
-----------------------------------S----------------------------S---------------
------S---------S---------------------------------------------------------------
-----------------S----S----S----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------
>forward_97
----------------------------------------------------------------------------CCAC
CAACATTAAGCAAGCGT---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------
>reverse_1499
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------TGGTAAGCAGATCTTGGTGCT-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------
>forward_874
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------TTCGGACGAAAAATGCACCT------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------
>reverse_2572
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------GTGGTGATGATGCAAGGAGC-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------
