>input_sequence_65809
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-------------------------------------------------------------------ATGGCGTCGGAGG
CCAGGTCCGGGGGCGCGCGGCGGGTTCCGCTGCGGCCGAGGGACGGCAACGCGGCCGCGGCCTCCCCGTCCTTGGGCGGC
GGCGCCCTTGCAAAGTCGAAGGCGAAGGCGCGGCCGGCT------GCCGCGTCGCCGCCGTCGGTGAGGTCGTACGCGAG
CCGGGAT------------------GCGGCGGCGGTGGTGAGGGAGAAGGAGGTGTCGCTGGCGGAAGAGCTGGAGAAGG
CGCGGGAGCGGCGGGGCCGGCTGCGGGCCGCGCGGCAGGTCACGGAGCGGGCGCTGGCGGAGGCGGACGAGGCGCTGCGG
CGGGAGATGCGGGAGTGGGAGCGCCGGGCCGACGAGCAGCGCCGGGTCGTTGCCGAGCTGATGCGCCTCATCGGGATGCC
CGAGGTACGGTGTTCTCCCCTCTGTTTTGATTCAGTTTGGTAGCTGGTCT----GGTGCTCGTTTCTGAAGCTCTGTCGG
ATTGATGCTAATCGT----GGCTGCGGCAGGTCTATGTTCCGGTGGAATCGCTGAGATCCAGGGAGGAGAGGAAGAGGAA
ACAGGGGGCTGCGTCTTCAGATTCTCAGGTAAACGCTCT--GCTGCTCTCG----------CATCACTGATTGGCAAAAA
T-GTGTCTGTGCCTAAC-------ACATGCTTGTATTCGTTGAGAAACAAAATGTG-ACTGAACTGAATCACACACGCTT
-AAATTCGTTTAGAAATCAGGATCCTATACTGTATTG---TTTGCCTGGACGAAATGCTTTTTAGTATTTTGATTCGAAA
CTCCATTCCCATGTTTCAGGGTCCGGTCACGGTGGCTTCAACACTACTAGAGGAAGAAGCCGGGGCAGATCCCTCCGATC
AGGAACTGCTGGCGACGCCGACAAGAGAAACGAGT---GCAGCAGCAGCCACGGAAAGCAGCAGCGTTTGA---------
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>chr5B_1_TraesCS5B01G355200
CCGGTTGTAGACAGTGGCGGAGCTTAGTGGAGAGCAACCTGGGCCATTGCCCCCCCAGCCCATGAGAAAACTAGCATATA
TCCCCTAGTATTCAGCCCATATGCCCAGTTAAAATCAGCCTAAACTCATATTTCTTGCCCCTCCAGCCCATTTGCCCCTC
CATAAAATCAGCCCAAGCTCCGCCACTGGCTGTAGATGCTCTAATGTAGAAGAAGGCAGTACACTGCTCGTGGGTGACGC
AAGTTCATGTTATTTGTATTTCTGCCGTTCCTTGTATAAGAACGAGGAGGGTTGTGACATTGGTTGCGCATGAAGAGAGC
CAACAAGAAAGGCCAATAGAGGGCAAGGTAAAAGTGTTCGAGCAGTTTTAACATGCTCCCTCTTATATCCTTTTTTCACA
TGAGAGGTAAGAGTATATAATAGATCTGGGCCGTTGATCTTATTAATTAGTGGTCAGATTTAGTCTTAACTTCTTACCCC
ACATGTAAATAGAGGGGGCTAGAGGGAGCATGTTAAAATTTGCCAAAACTGTTCTGTTGTATCACAGTCCCTCTAACCAT
CTATTCGCCTCCCTAAACAATTGTAAACTGTTATTTTCGTACCAATGTAGCCCTTCCTTATTTTTTGGTTCAAAAGGAAA
AGATACCCAACGCCACCGGCACGTCATCCGGCAAACGTTCCCCGAAAACCCAGCAAAAGAGCACCGTCATCATGCATGTG
TTCGTGAGTCCATCTCAGCGCCG---AAAGCCATCCAAACGAAGACCAGGCAAGGCCGAGACTGCCCTCCGCCGTCTTGC
CCCCGCCCCCACGTTCCCCAGGGGCAAACCCGTCCACCCACGCCTCCACGCCGTGCCCAGAGTTACTAGCCGTTGTTACT
TCCACC--------------CCCCTTCAAATTCGAA-CCCCCAAACCGCTCGCGAAATCCCC-AATCAACGCCTCCTCAC
GGCAATCAATCGCT--------CACTCACGCCGCGAGAGGCGCGAGGGAGGCTCCTCCTCCACTCCGATGGCGTCGGAGG
CCAGGTCCGGGGGCGCGCGGCGGGTTCCGCTGCGGCCGAGGGACGGCAACGCGGCCGCGGCCTCCCCGTCCTTGGGCGGC
GGCGCCCTTGCAAAGTCGAAGGCGAAGGCGCGGCCGGCT------GCCGCGTCGCCGCCGTCGGTGAGGTCGTACGCGAG
CCGGGAT------------------GCGGCGGCGGTGGTGAGGGAGAAGGAGGTGTCGCTGGCGGAAGAGCTGGAGAAGG
CGCGGGAGCGGCGGGGCCGGCTGCGGGCCGCGCGGCAGGTCACGGAGCGGGCGCTGGCGGAGGCGGACGAGGCGCTGCGG
CGGGAGATGCGGGAGTGGGAGCGCCGGGCCGACGAGCAGCGCCGGGTCGTTGCCGAGCTGATGCGCCTCATCGGGATGCC
CGAGGTACGGTGTTCTCCCCTCTGTTTTGATTCAGTTTGGTAGCTGGTCT----GGTGCTCGTTTCTGAAGCTCTGTCGG
ATTGATGCTAATCGT----GGCTGCGGCAGGTCTATGTTCCGGTGGAATCGCTGAGATCCAGGGAGGAGAGGAAGAGGAA
ACAGGGGGCTGCGTCTTCAGATTCTCAGGTAAACGCTCT--GCTGCTCTCG----------CATCACTGATTGGCAAAAA
T-GTGTCTGTGCCTAAC-------ACATGCTTGTATTCGTTGAGAAACAAAATGTG-ACTGAACTGAATCACACACGCTT
-AAATTCGTTTAGAAATCAGGATCCTATACTGTATTG---TTTGCCTGGACGAAATGCTTTTTAGTATTTTGATTCGAAA
CTCCATTCCCATGTTTCAGGGTCCGGTCACGGTGGCTTCAACACTACTAGAGGAAGAAGCCGGGGCAGATCCCTCCGATC
AGGAACTGCTGGCGACGCCGACAAGAGAAACGAGT---GCAGCAGCAGCCACGGAAAGCAGCAGCGTTTGATCATCCCTT
TCTTTGCCACATTGGCCCGTTCCAAACTGTTTCTGCACAAGGCCTCCGAATGAAATCAAATGGCTTGTTTGGTA---TCT
GCTTGCGTGCGTCCATACATGATATGTGATGTCTGTGAATCTTCAGC--ATAGACAACTTGTATGAATCGCTCCCCTACA
CATGACA-------------------------------------------------------------------------
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------------------------------------------------------------------TGATTTCCTCTTCT
GTTGGGAAGAATGATTGTGTGTCTGGAGTATATGAGTTTCCTGAGAAGCAGG---AAGGTGGGGCCGGTACCCGGCAACC
CGGCGGGCTCCCTCGCCGGCGAGCTTGCCGTGATTTCCCCGGGCTAATCAATAATTCTTGGGCCTTGCTTTGCCTGCTGC
TTCTAGGTCCAACTAGCTATCTTGCACGCCCGCACAGCGCAGCCTGCGGATGACAGGCCTAGGTGCCCAAACCGCCAACG
AAAATGCGGATTTCCACCTATATGTCGCATTAAGCGAGATCACTAATTAAGAGGTACTTCCTCCGTTCGGAATTACGTGT
CACAAAAATGGATGTTTCTACAACTAAAATACATCTAAATACATTAATTTCTTACACGAGTAATTCCGAACAGAGGGAGT
ACTTCTTGTGGTTGAATCTCAACCCAGAACGGGGACTTTCTCCTATGTGACGCATTAAGAAAAAATATATTAATTAAGAG
ATACTCCTTC------------------TCTGGTGTTGACGTAACCTGAA----------------TTTTTTTTCTCTTA
AATTCATTTTTTCAAAACGTTTTATCTCTTGAACCATTGAATTTCTCACATTGAAATCTTTAAACTAGATCACACAT---
-TAAATTTTGATGAAGTTATTTTATCGCAAAAAAGGGATGGGAAAACCAAGAACAGAAAAAAAAGCAAGAAAAAAAAAAC
TACAAGTCG-AAAAAAATCAAAACCAGAAAAAGACCGAAAACAAAAAATTGAAACCCCCAAAACCAAAAACTGAAAGCAC
AATTATGCTATTTAATACTTTGGGGAAACACAATTGTGATTTTCCCTTTTCAGCATG
>chr5D_604
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-------------------------------------------AATATAGCTCTTCCTTTCATTCGT-TTCAAAAGGAAA
AGATACC---------CAGCACGTCATCCGGCAAACGTTCCCCGAGAACCCCGCAAAAGAGCATCGTCATCATGCATCT-
-------ATCCATCTCAGCGCCGCCGAAAGCCATCCAAACGAAGACCAGGCAAGGCCGAGACTGCCCTCGGCCATCTTGC
CTGCGCCCCCACGTTCCCCACGGGCAAACCCGTCCATCCACGCCTCCACGCCGTGCCCAGAGTTACTAGCCGTTGTTACT
AGTCTGAACCCTCTCTCCCACCCCTTCAAATTCGAACCCCCCAAACCGCTCGCGAAATCCCCAAATCAACGCCTCCTCAC
GGCAATCAATCAAGCAATCATCCATTCACCCCGGGAGAGGCGCGCGCGGGGCTCCTCGTCCACTCCGATGGCGTCGGAGG
CCAGGTCCGGGGGCGCGCGGCGGGTTCCGCTGCGGCCGAGGGACGGCAACGCGGCCGC---CTCCCCGTCCTTGGGCGGC
GCCGCCCTTGCAAAATCGAAGGCGAAGGCGAAGGCGGCT------GCTGCGTCTCCGCCGTCGGTGAGGTCGTATGCCGG
CAGGGCTGAGGTTGAGAGCAG---GGCGGCGGCGGTGGTGAGGGAGAAGGAGGTGTCGCTGGCGGAGGAGCTGGAGAAGG
CGCGGGAGCGGCGGGGCCGGCTGCGGGCCGCGCGGCAGGTCACGGAGCGGGCGCTGGCGGAGGCCGACGAGGCGCTGCGG
CGGGAGATGCGGGAGTGGGAGCGCCGGGCGGACGAGCAGCGCCGGGTCGTGGCGGAGCTGATGCGCCTCATCGGGATGCC
CGAGGTACGGTT-----CCGTCTGTTTCGATTCCGTTTGGTAGACGTTCT----GCCGCTCGATTCTCAAGTTCTGTGGG
GATGATGCTGATCGT----GGCGGCGGCAGGTGTATGTTCCGGTGGAATCGCTGAGATCAAGGGAGGAGAGGAAGAGGAA
ACAGGGGACCGCGTCTTCAGATCCTCCGGTAAATGCTCTCTGCTCCCCGTTCTTATTTTCACATCACTGATTGGCAAAAA
TTGTGCCTGAATCTAAC-------ACATGCTTAAATTCATTGAGAAACAAAAATATTCCTGAACTGAATCTCACACGCTT
AAAATTCGTTTAGAAATCAGGATCCTATACTGTATTG---TTTGCCTGGACGAAATGCTTTTTA---TTCTGATTCGAAA
CTCCATTCACATGTTTCAGGGTCCGGTCACAGTGGCTTCAACATTACTAGAGGAAGAAGCCGGAGCAGATCCCTCCGATC
AGGGACTGCTGGCGACGCCGACAAGGGAAGCGACA---------------ACCGAAAGCAGCAGCACTTG---ATCCCTT
TCTTTGCCACATTGGCCTGTTTCAAATTGTT-CTGCGCAAGGCCTCCGAATGAAATCAAATGGCTTGTTTGGTACTATCT
GCT----TGCGTCCATACATGATATGGGATGGTTTTGAATGTTCAGCGTATAGAGAACTTGTATGAATCGCTCGTCTACA
CATGACTTCCTTCTCTATTTTTTCTTTCGAGCAAAGGAAAGGAGCCCAGGCTCCGAATCTCATTTTCACGGAACTGAAAA
AACAATCACCAAGAAAGGGAGGAAAAACTATCGCCCCAAAACAGCACGCCCGCAGCAAAACTAGCTTGCCGAGCTAAACA
GACTCCCCAGGGGACAAAACACAGGGGAACATCACTCTCGGTATACACAAGACAGCCACACCTATGCTCAACAGATCAGC
AACAAAACGAAGCACTAACTGAAACCGCACCAAATCATAGTAAAGAACTGCAACTCAGCAGCTTCTCACCAGCAGTAGCA
TCAGGCCCATCCGATCCTAGGAACAGCCAGCGTCCAAAGAAATCATGAGCCACCAAAAAAAAAAAAAGCACCAGCATGTT
TGCCGCACTGCGACATGGGTTTCGCCCCCTTGGTTTCTGCCGTCCAGACCAGTAGGTAAGCCAATGAGCTATTTAGAATA
ACTACACCAGTAGGATCTAAAGGACAATAATGCCATTAAAACATGCACTATTCCTGGTTTTCCCCTTGATTTCCCTTTTT
GTTGGGAAGAATAATTGTGTGTCTGGAGTATATGAGTTTCCTGAGAAGCAGCAGCAAGGTGGAGCCAATACCCGG-----
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>chr5A_632
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-----------------------------------------------------------------------AAAAGGAAA
AGATACCGAGCGCCAGCAGCACGTCATCCGGCAAGCGTTCCCCGAGAACCCCGCAAAAGAGCATCGTCATCATGCGTGT-
-------GTCCGTCTCAGCGCCG---AAAGCCATCCAAATGACGACCAGGCAAGGCCGAGACTGCCCTCGGCCGTCTTGC
CTGCGCCCCCACGTTCCCCACGGGCAAACCCGTCCAT-------------------CCAGAGTTACTAGCCGTTGTTACT
---CTGAACCCACTCTCCCAACCCTTCAAATTCGAACCCCCCAAACCGCTCGCGAAATCCCCAAATCAACGCCTCCTCAC
GGCAATCAATCAAGCAATCATCCATTCACGA---------CGCGAGCGGGGATCCTCCTCCACTCCGATGGCGTCGGAGG
CCAGGTCCGGGGGCGCGCGGCGGGTCCCGCTGCAGCCGCGGGACGGCAACGCGGCCGC---CTCCCCGTCCTTGGGCGGC
GGCGGTGCCGCCAAATCGAAGGCGAAGGCGAAGGCGCGGGCGGCCGCCGCGTCGCCGCCGTCGGTGAGGTCGTATGCGAG
CCGGGACGAGGCCGAGCGGAGGGCGGCGGCGGCGGTGGTGAGGGAGAAGGAGGTGTCGCTGGCGGAGGAGCTGGAGAAGG
CGCGGGAGCGGCGGGGCCGCCTGCGGGCCGCGCGGCAGGTCACGGAGAGGGCGCTGGCGGAGGCCGACGAGGCGCTGCGG
CGGGAGATGCGGGAGTGGGAGCGCCGCGCGGACGAGCAGCGCCGGGTCGTCGCGGAGCTGATGCGCCTCATCGGGATGCC
CGAGGTACGGT-----CCCGTCTCTTTCGATTCCGCTTGGTAGATGTTCCTGAAGGCGCTCGTTTCTCAAGCTCTGTGGG
GATGCTGCTGATCATGACGGGCGGTGGCAGGTGTACGTTCCGGTGGAATCGCTGAGATCCAGGGAGGAGAGGAAGAGGAA
ACAGGGGACCGCGTCTTCAGATCCTCCGGTAAATGCTCT--GCTCCTCGTTTCTATTTCCACATCACCGATCGGCAAAAA
T-GTGTCTGAATCTAATACGGAGTACATGCTTAAATTCGTCGAGAAACAAAATGTG-CCTGAACTGAATCTCACATGCTC
-AAGTTCGTTGAGAAATCAGGATCCTGTACTTTATTATTATTTGCCTGGACGAAATGCTTTTTTC--TTTTGATTCGAAA
CTCCATTCACATGGTTCAGGGTCCGGTCACAGTGGCTTCAACATTACTAGAGGAAGAATCTGGACCATGCCTCTCCGATC
AGGAACTGCTGGCGACGCCGGCAAGGGAAACGACCGCCGCCGCAGCAGCGACGGAAAGCAGCAGCGCTTG---ATCCCTT
TCTTTGCC---------TGTTCCAAACTGTTTCTGCACAAGGCCTCCCAATGAAATCAAATGGCTTGTTTGGTAGTGTCT
GCTTGCGTGCGTCCATACATGATATGTGATGCCTGAGAATGTTCAGC--ATAGACAACTTGGATGAATCACTGTCACTCG
TCTACG--------------------------------------------------------------------------
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----------------------------------------------------------------CTTGATTTCCTCTTCT
GCTGGGAAGAATGATTGTGTGTCTGGAGTATACGAATTTCCTGAGAAGCAGG---AAGGCGGGGCCAGTACCTGGCGACC
CGGCGGGCTCACTCGCCGGCGAGCTTGCCGTGATTTGCCCGGGCAAATTGATAATTCTTGGGCCTTGCTTGT-----TGC
TTCTAGGCCCAACTAGCTAACTTGCACGCCCGCACAGCGCAGCCCGCTGATGATAGGCCTAG-TGCCCAAATCGCCGG--
-------GGATTTCCCCCTATATGACGCATTAAGCGAAATCACTAATTAAGAG---------------------------
------------------------------------------------------------------------------GT
ACTTCTTGTGGTTAAATCGCAACCGAGAATGGAGACTTTCTCCTATGTGACGCCTTAAGCAAAGT--TATTAATTAAGAG
ACACTCTTTGTAAAGGTCACTCCCACCTTCTGGTGTTGACGTGTCCACTTGTCGTAATCTGAAAGTTTTTCTTCTTCTTA
AATTCATGTTCTCAAAACTTTTTATCTCTTGAACCATTGAATTTCTCGCATTGAAATCTTTAAAACTGGATCACATGTTA
ATACATTTTGATAAAGTTATGATT-------AAAGGGATGGAAAAAACACAAACAAAAAAAGC------AAGAGAAAAAC
TACAAGCAAAAAAAAAACCAAAACCAGAAAA-------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S----S-------SSS--SSSS------------
-------S-S-----S-S---------------------------S-----S-----------S---------------S
SSSSSSS--------------------------------------------------------------S----------
-SS-----------------S---------------S-------------------------------------------
SSSSSS--------------------------------------------------------------------------
-----------SSS----------S--------S------------S-S-------------------------------
----------------------------------------------------------SSS-------------------
--------------S---------------SS-S----------------------------------------S-----
------------------------------------------------------------------S-------------
----------------------------------------------------------------S---------------
-----------------------------S--------------------S--S--------------------------
-----------SSSSS---S-------S-----S---------S--S---------S----------S---------S--
SS-------S------------S---------S-----------------------------------------------
-------S-S------------S---S------S----------S---SSS-----------------------------
---------SSS--------------------SS-----------------------S------------S---------
----------------------------------------------------------------SSS-------------
--------S---------------------S------------S-------------------S----------------
-------------------------S-------SS-----S--------S----------------S---SSS-------
-----------------S--------------------------------------------------------------
-------------------------------S--------S--------------------------------S------
------S-------------------------------------------------------------------------
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------------------------------------------------------------------S---------S---
----------S-------------------------S-------S---SS--------------------SSSSSSS---
-------S-----------S------------------------S--S-----S--------S--------S----SSSS
SSSSSSS--------S--------S------------S---------------SSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
-------------S----S-----S----S--S--------------------S-----S---SSSS-------------
-S----S--S--------------------------------SS--SSSS--------------------S--SS-----
-------S--S-------S----------------------------S----------------SSS-SSSSSSSSS---
---S--------S-------SS-SSSSSSSS----------S----S--SS----S-----SSSSSSSS--S-S------
------SSS--------S-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_312
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----------------------------------------------------TGTGACATTGGTTGCGCATG--------
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>reverse_1484
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-------------------------------------------CTGGTCTGGTGCTCGTTTCT-----------------
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>forward_313
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-----------------------------------------------------GTGACATTGGTTGCGCATGA-------
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>reverse_1627
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--------------------------AGGTAAACGCTCTGCTGCTC----------------------------------
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>forward_985
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-----CACGGCAATCAATCGCTCAC-------------------------------------------------------
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>reverse_2873
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------------------------------------------------------------------------CCTGCTGC
TTCTAGGTCCAA--------------------------------------------------------------------
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