>input_sequence_65783
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-----------TCCCCTCCCGCCTCCCACCCAGCCCATCTTCTGTCCCTGGTAGACATTCCTTCCTGATCTTGCCTCGCT
CTTGTGCTACCTCCACATCTCATCTCCCCATGGACGGCGGCGCCGCCACCGTCTGCTCCATGTGCGGGGACATCGGCTTC
CCCGACAAGCTCTTCCGGTGCGCGCGCTGCCGCTACCGCTTCCAGCACTCGTAAGTATTCCTCCACTGCCCACACCATCC
GTCCATCTCTTCTTCTT----------------CCTCCGCCC--------------------------------------
------------CTTCTTGATATGAATGGATGAGGAACTCTCATGG---ATGAGGGAAC-AAACACTAGCTAGTATATGT
TTGTTTTCTAGCTAATCTTGCAGTAGTAGTAGTACATCTTTCTCATATATGCGGTGCTTGCATGCAGCTATTGCACGAAC
TACTACGGCGACGGGGCACCGGCCTCAGCCGGGGCCGACATGTGCGACTGGTGCCTCGGCGACGTCTCCGGGAAGGCCAG
GAGGAGCGCGTCTACATCCGGGAAGCAGCAGGCCTCCGTCTGCCAGGATTCGGCCACGACGGGCTACTCCGGCAGGATCG
ACAAGGCGGCAACCGGCGGCGACCAGGAGAGCGGGCGGCGAGGGTCGACCAAGGTGGGAGGCCGCAGGTACAAGCTGCTC
AAGGACGTCCTGTGTTAGAAACTAGTTT---TAGGCGCCATCTTGCAGGCCTGATCGAGCATGACCGATAAGTAAGACCA
GCTAGTTATGAGGAGTTAGCTTGTAGCCAAGGTCGGTAGT--TATATTAGTTTGATCGATGTGCATATATGAGTATTGTA
TATGTTTGTTTGCTTATGTGTTACTTAGGAGTAAGCATCTGCTCGCTTATAGTAAGTACTCTGGCTTGGCAAACCTTATC
TTATGCTGTTTG----TGTGGCCACAGTTTATCTA---------------------------------------------
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>chr2A_1_TraesCS2A01G413800
GTAGATGTAAGGCATTGTGGTTTCTTCTAACAGAAATCGAAGAGAAAGTTCTCTTTATCCAAAAAAAAACAT--GCAGAG
CTATTTTTTGACACAGACACATACACTCATATATAC--------ACTCACATTTATAAACGCACACACGTACACCCTATC
CTCGTGAGGACCTCCGAGAGAGTGAGTCGACACAGACACCTTCGTAGACCG---------------------TAGTCAAC
GGAAGGTCTCTTCCCACTGAATGCACGTCACCTGAATGCCTGAAATAAATCTAATAAATGCGAGCACGAGCGTCTAGGAG
TTGAACCCTGATGAGCTAAGATAGCAATGACCTCCTACCCATCCAACCGAACCTTGCTTCGCAAGCAAGTAGGAGCTAGT
AGCAAATAAGCTAGCTAAATTTGTTTCGGTCGAAATCCAGTTGGGACTTTCGTGAAAGCGTCACCATAGAACCGACTTAT
TTGGGGGGAAAGGACACCTAAAATGCGTACGTGCACGGTTCATCTATACAACAACACGGACTAGCTGGCAGCTTAGGCAA
TCAGAGTACACGCAGTGTCCACTAGTAATTGTACGTTTCATTTCACATGCCAATC-AATCGTTCGGCAGTTTCTTGCCGC
TTTTCGCGCCTACTAGTAGTAAAACTGGAAGGACGTCGACCCGGAGACATTCATGTGTAGCTTCAGCGCACCCAGCAT--
-----CCGTTTCTTTGCAACTGGATTTGGCTAGAAGTTTTTCTCGGCGTCTTGAATCTCGATCCTGG-AGCGGTGGCAAG
CACTGGTGCCCGCATATGCATGCATGCACCGACTCGGGTAGATCTATCTAGCCAATTCA--------CCGTGCAATAAG-
ATTTCTTTTATATGTGCTGCCGTGCGTTGTTTGAGATGGATGTGTACTGTCTGGTCGCCGGGTTAAGGTTGTCGTGTGCG
CCCCCCTTCCTCCGCCTCTCCACCTTTCTCTCTC--GTATTTAATACGCCTCGGGCCCTCTTCAGCCCTCACCCCTACAT
GTCCACCCCTCTCCCCTCCCGCCTCCCACCCAGCCCATCTTCTGTCCCTGGTAGACATTCCTTCCTGATCTTGCCTCGCT
CTTGTGCTACCTCCACATCTCATCTCCCCATGGACGGCGGCGCCGCCACCGTCTGCTCCATGTGCGGGGACATCGGCTTC
CCCGACAAGCTCTTCCGGTGCGCGCGCTGCCGCTACCGCTTCCAGCACTCGTAAGTATTCCTCCACTGCCCACACCATCC
GTCCATCTCTTCTTCTT----------------CCTCCGCCC--------------------------------------
------------CTTCTTGATATGAATGGATGAGGAACTCTCATGG---ATGAGGGAAC-AAACACTAGCTAGTATATGT
TTGTTTTCTAGCTAATCTTGCAGTAGTAGTAGTACATCTTTCTCATATATGCGGTGCTTGCATGCAGCTATTGCACGAAC
TACTACGGCGACGGGGCACCGGCCTCAGCCGGGGCCGACATGTGCGACTGGTGCCTCGGCGACGTCTCCGGGAAGGCCAG
GAGGAGCGCGTCTACATCCGGGAAGCAGCAGGCCTCCGTCTGCCAGGATTCGGCCACGACGGGCTACTCCGGCAGGATCG
ACAAGGCGGCAACCGGCGGCGACCAGGAGAGCGGGCGGCGAGGGTCGACCAAGGTGGGAGGCCGCAGGTACAAGCTGCTC
AAGGACGTCCTGTGTTAGAAACTAGTTT---TAGGCGCCATCTTGCAGGCCTGATCGAGCATGACCGATAAGTAAGACCA
GCTAGTTATGAGGAGTTAGCTTGTAGCCAAGGTCGGTAGT--TATATTAGTTTGATCGATGTGCATATATGAGTATTGTA
TATGTTTGTTTGCTTATGTGTTACTTAGGAGTAAGCATCTGCTCGCTTATAGTAAGTACTCTGGCTTGGCAAACCTTATC
TTATGCTGTTTG----TGTGGCCACAGTTTATCTAGCACGTACTCTCTTGTTCTCTTGTGCCGGTAATCTTTCGTTTGTT
CACATTGGATGCATGCTTACATACTCCTAATTGGTTTTCTCTACCGCATGTTACGTGATTACTTTGCTGTCCTCTTCTCA
ACTCTGTTCTTCAAACACTCGTGCATCGTGCATGAATCGAGTGGTAATGACAACGAAGTCGCCGTACGTTGCGTATATAT
GGGGAATTAAGGATGCCATAGTCCCAATACCTTGCATCTCTAGGAGTCTAGGTACTAGCACGCATGGTGCGTGCATGCAT
G-----CATGCATCCCTAGCTGCTGTTCCCGGCCGTACACGCATGTACCAGTGATTTCCCGAACCCAAGGCCGTGGGAGA
GGCCGGCCGGAGGCCG-------GAGCTAGGTAGCACGCTGCATGCTGCCAAGGCGATCGAGCCGGCCGGCCAGCCACGG
CCAGGGTCGATGCATGTAGCAGTCAACGAGTCGTACCGGGCAGGACCGGCCGGTGGAAGTGGCCGACAAACCCATGCGTG
CTCCCCTCCACTTGCATGCGCTGCTAGGTTAATTATCCCGCGCCTCTGCGTGCATGGCTGCCTAGCTAGCTCGGTCGTTA
ATTAGCCTCCAAATCTACACCTGATAATAAGTTAAA----AGAGATAGAGATATGCAGTGGCTGACAGGTTTCTATGCCA
CTCTCAGTCTTCTCCTCCTTTTATACGTAC--------------------------------------------------
-----------TAATCTTGTTCGATTTGCTCGTGATGCCCTGTCCACGTCGATCGATTCGATG---GTACGCGTATAAGA
TTCAGATCTCTTCACACAGTAAAACT-----AAACGTACCTATATATGGCATGGCCCATCTTCAGGAAAAGGTGATTCTT
TTTCCAGTTAAGCCGGCCTCAGCTGTTAAGACCGGGAATTAATAGTGCGCACTACGTAGACGAGCACACACGTACAGCTG
TGCTCGCCGGCCCACGGTACCAATGCTGCCGACCCTACCGTGCATGTGTGAACCTGGTTCTTTTTAGGTGTCATGTAGCA
>chr2B_1
GTAGTAGTAAGGCATTGTGGTTTCTTCTAACAGAAACCAAAG---AAGCTCTCTTTATCAAAAAAAAAAAATAGGCAGGA
GTTTTTTTAAACACATAG-CATACACTCATATATACGCACGTACACTCTTATGTATGAACGCACAGATGCACACCCTACC
CCTGTGAGGACCTCTGAAAGACTGGGCTGACACAACATCTTATGATTAACGAAGTCATTACAGAAGCCTTCATAGTCGAC
GGAACGTATTTTCCCACCGAATGCACATCACCTGAATGCCTGAAATAAATTCAATAAATGCGAGCACGGGTGTATAGGAG
TTGAACCCTGATGGGCTAGGATAG----GACCTCCTAACCATCCAACCGAACCTTGCTTCGCAAGCAAGCTGGAGCTAGT
AGCAAATAGGCTAGCTAAATTTGTTTCGGTCGAAATCCAGTTGGTACTTTCGTGAAAGCGTCACCATAGAACCGACTTAT
TTGGGGGGAAAGGACACCTAAAACGCGTACGTGCACGGTTCATCTATACAACAACACGGAG----TAGCAGCTTAGGCAA
TTAGAGTACACGCAGTGTCCACTAAA---TGTACGTTTCATTTCCCGCAAAAAAAAAATCGTTCGGCAGTTTCTTGCCGC
TTTTCGCGCTTACTAGTAGTAAAACTGGAAAGACGTCGACCCGGAGACATTCATGTGTAGCTTCAGCGCACCCAGCATGC
ATCTTCCGTTTCTTTTCAACTTGACTTGGCTAGAAGTTTTTCTCGGCGTCTTGAATCTGGATCCTGG-AGCGGTGGTGAG
CACTGGTGCTCGCAT----ATGCATGCACCGACTCGGGTAGATCTATCTAGCCAATTCA--------CCGTGCAATAAGA
--TTTTTTTATATATGCTGCCGTGCGTTGTTTGAGATGGGTGTGTACTGTCTGCTCGCTGGGTTAAGGTTGTCGTGTGCG
CCCCCCTTCCTCCGCCTCTCCACCTTTCTCTCTCTCGTATTTAATACGCCTCGGGCCCTCTTCAGTCCTCACCCCT----
----------CTCCCCTCCCGCCTCCTACCCAACCCATCTTCTGTCCCTGAT----ATTCCTTCCTGATCTTGCCTCGCT
CTTGTGCTACCTCTACATCCCATCTCCCCATGGACGGCGGCACCGCCACCGTCTGCTCCATGTGCGGGGACATCGGCTTC
CCCGACAAGCTCTTCCGGTGCGCGCGCTGCCGCTACCGCTTCCAGCACTCGTACGTAT----------------------
------CTCTTCTTCTTCCTCCCCC-TCGCTCTCCTCCGCCACTTCTTGATATGAATGGATGAGTCACCGTCACTCACCA
TCCCAACACTAGCTTCTTGATATGAATGGATGAGGAACTCTCATGG---ATGAGGGAACAAAACACTAGCTAGTATATGT
ATGTTTTCTAGCTAATCTTGCAGTAGTAGTAGTTCATCTTTCTCATATATGCGGTGCTTGCATGCAGCTATTGCACGAAC
TACTATGGCGACGGGGCACCGGCCTCGGCGGGGGCTGATATGTGCGACTGGTGCCTCAGCGACGTCTCCGGGAAGGCCAG
GAGGAGCGCGTCGACTTCCGGGAGGCAGCAGGCCTCCGTCAGCCAGGATTCGGCCATGACGGGCTACTCCGGCAGGATCG
ACAAGGCGGCAACCGGCGGCGACCAGGAGAGCGGGCGCCGAGGGTCGACCAAGGTGGGAGGCCGCAGGTACAAGCTGCTC
AAGGACGTCCTTTGTTAGAAACTAGTTT---TAGGCGCCATCTTGCAGGCCTCATCGAGCATGACCCA--AGTACGACCA
GCTAGTTATGAGGAGTTAGCTTGTAGCCAAGGTCGGTAGT--TATATTAGTTTGATCGATGTGCATATATGAGTATTGTA
TATGTTTGTTTTCTTATGTGTTACTTAGGAGTAAGCATCTGCTCGCTTATAGTAAGTACTCTGGCTTGGTAAACCTTATC
TTATGCTGTTTGTTTGTGTGGCCACAGTTTATCTAGCACGTACTCTCTTGTTCTCTTGTGCCGGTAATCTTTTGTTTGTT
CATATTGGATGCATGCTTACATACTCCTCATTGGTTTTTTCTACTGCATGTTACGTGATTACTTTGCTGTCCTCTTCTCA
ACTTTGTTCTTAAAACGCTCGTGCATCGTGCATGAATCGAGTGGTAATGACAACGAAGTCGCCGTACGTTGCATACATAT
GGGGAATTAAGGATGCCATAG---CAATACCTTGCATCTCTAGGAGTCTAGGTACCAGCACGCATGGTGCATGCATGCAT
G-----CATGCA---CTAGCTGCTGTTCCCGCCCGTACACGCATGTACCAGTGATTTCCCGAACCCAAGGCCGTGGGAGA
GGCCGG-------CCG-------GAGCTAGGTAGCACGCTGCATGCTGCCAAGGCGATCGGGCCGGCCGGCCAGCCACAG
CCAGGGTCGATGCATGTAGCAGTCAACGGGTCGTACCAGGCAGGACCGGCCGGTGGAAGTGGCCGACAAACCCATGCGTG
CTCCCCTCCACTTGCATGCGCTGCTAGGTTAATTATCCCGCGCCTCTGCGTGCATGGCTGCCTAGCTAGCTCGGTCGTTA
ATTAGCTTCCAAATCTACACCTGATAATAAGTTAAATAAAAGAGATAGAGATATGCAGTGGCTAAAAGGTTTCTATGCCA
CGCTCACTCTTCTCCTCCTTTTATACTAAT--------------------------------------------------
-----------CAATCTTGTTCGATTTGCTCGTGATGCCCTGTCCACGTCGATCGATTCGATGGTAGTACGTGTATAAGA
TTCAGATCTCTTCACACAGTAGTAGTACTAAAAACGTACCTATATA-----TGGCCCATCTTCAGGAAAAGGTGGTTCTT
T----AGTTAAGCCGGCCTCAACTGCTAAGACCAGGAATTAATAGTGCGCACTATGTAGACGAGCACACACGTACAGCTG
TGCTCGCCGGGCCACGGTGCCAATGCTGCCGACCCTACCGTGCATGTGTGAACCTGGTTCTTTTTAGGTGTCATGTAGCA
>chr2D_82
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---TTTTTTAACACATACACATACACTCATATATACGCACGTACACTCTCCTGTATGAACGCACACATACACACCTTATC
CCTGTGAGGACCTCCAAGTGACTGGGCTGACACAACATCTTATGATT-------------------------TAGTCGAC
GGAACATCTTCTCCCACTGAATGCACATCACTTGAATGCCTGAAATAAATCCAATAAATGCGAGCACAGGTGTCTAGGAG
TTGAACCCTGATGAGCTAAGATAGCAATGACCTCCTAACCATCCAACCGAACCTTGCTTTGCAAGCAAGCTGGAGCTAGT
AGCAAATAGGCTAGCTAAATTTGTTTCGGTCGAAATCCAGTTGGGACTTTCGTGAAAGCGTCACCATAGAACCGACTTAT
TTGGGGGGAAAGGACACCTAAAATGCGTACGTGCACGGTTCATCTATACAACAGCTCGGACTAGCTAGCAGCTTAGGCAA
TTAGAGTACACGCAGTGTCCACTAGTAACTGTACGTTTCATTTCACATGCCAATC-AATCGTTCGGCAGTTTGTTGCCGC
TTTTCGCGCCTACTAGTAGTAAAACTGGAAAGACGTCGACCCGGAGATATTCATGTGTAGCTTCAGCCCACCCAGCAT--
-----CCGTTTCTCTTCAACTGGACTTGGCTAGAAGTTTTTCACGGCGGCTTGAATCTTGATCATGGAAGCGGTGGCAAG
CACTGGTGCCCGCAT----ATGCATGCACCGACTCGGGTAGATCTATCTAGCCAATTCAGCAATTCACCGTGCAATGAGA
ATTTTTTTTATATATGCTGCCGTGCGTTGTTTGAGATGGATGTGTACTGTCTGGTCGCCGGGTTAAGGTTGTCGTGTGCG
CCCCCCTTCCTCCACCTCTCCACCTTTCTCTCTCTCGTATTTAATACGCCTCGGACCCTCTTCAGCCCTCACCCCTACAT
GTCCACCCCTCTACCCTCCCGCCTCCCACCCAACCCATCTTCTGTCCCTGATAGACATTCCTTCCTGATCTTGCCTCGCT
CTTGTGCTACCTCCACATCTCATCTCCCCATGGACGGCGGCACCGCCACCGTCTGCTCCATGTGCGGGGACATCGGCTTC
CCCGACAAGCTCTTCCGGTGCGCGCGCTGCCGCTACCGCTTCCAGCACTCGTAAGTAT----------------------
------CTCTTCTTCTTCCTCCCCCCTCGCTGCCCTCCGCCA--------------------------------------
------------CTTCTTGATATGAATGGATGAGTCACCGTCACTCACCATGAGTGACC-AACCACTAGCTAGTACATGT
ATGTCTTCTAGCTAATCTTGCACTAGTACATCG--ATCTTTCTCATATATGCGGTGCCTGCATGCAGCTATTGCACGAAC
TACTACGGCGACGGGGCACCGGCCTCGGCGGGGGCCGACATGTGCGACTGGTGCCTCAGCGACGTCTCTGGGAAGGCCAG
GAGGAGCGCGTCTACATCTGGGAAGCAGCAGGCCTCCGTCAACCAGGATTCGACCACGACGGGCTACTCCGGCAGGATCG
ACAAGGCGGCAACCGGCGGCGACCAGGAGAGCGGGCGGCGAGGGTCGACCAAGGTGGGAGGCCGCAGGTACAAGCTGCTC
AAGGACGTCCTTTGTTAGAAACTAGTAGTTGTAGGCGCCATCTTGCAGGCCTGATCGAGCATGACCCATAAGTAAGACCA
GCTAGTTATGAGGAGTTAGCTTGTAGCCAAGGTCGGTAGCTATATATTAGTTTCATCGATGTGCATATATGAGTACTGTA
TATGTTTGTTTGCTTATGTGTTACTTAGGAGTAAGCATCTGCTCGCTTATAGTAAGTACTCTGGCTTGGTAAACCTTATC
TTATGCTGTTTGTTTGTGTGGCCACAGTTTATCTAGCACGTACTCCCTTGTTCTCTTGTGCCGGTAATCTTTTGTTTGTT
CATATTGGATGCATGCTTACATACTCCTCATTGGTTTTTTCTACTGCATGTTACGTGATTACTTTGCCGTCCTCTTCTCA
ACTTCGTTCTTAAAACACTCGTGCATCGTGCATGAATCGAGCGGTAATGACAACGAAGTCGCCGTACGTAGCATACATAT
GGGGAATTAAGGATGCCATAG---CAATACCTTGCATCTCTAGGAGTCTAGGTACCAGCACGCATGGTGCGTGCATGCGT
GCATGCCATGCA---CTAGCTGCTGTTCCCGGCCGTACACGCATGTACCAGTGATTTCCCGAACCCAAGGCCGTGGGAGA
GGCCGG-------CCGGAGGCCGGAGCTAGCTAGCACGCTGCATGCTGCCAAGGCGATCGAGCCGGCCGGCCAGCCACAG
CCAGGGTCGATGCATGTAGCAGTCAACGAGTCGTACCAGGCAGGACCGGCCGGTGGAAGTGGCCGACAAACCCATGCGTG
CTCCCCTCCACTTGCATGCGCTGCTAGGTTAATTATCCCGCGCCTGTGCGTGCATGGCTGCCTAGCTAGCTCGGTCGTTA
ATTAGCCTCCAAATCTACACTTG---ATAAGTTAAATAAAAGAGATAGAGATATGCAGTGGCTAAAAGGTTTCTATGCCA
CGCTCACTCTTCTCCTCCTTTTATACGTTCTCCCTATGTAAAGAAATATAAAAGCGTTTAGATCACCATAGTACAGAGGG
AGTACTAATCTTAATCTTGTTCGATTTGCTCGTGATGCCCTGTCCACGTCGATCGATTCGATGGTAGTACGTGTATAAGA
TTCAGATCTCTTCACACAGTAGTAGTACTAAAAACGTACCTATATA-----TGGCCCATCTTCAGGAAAAGGTGATTCTT
T----AGTTAAGCCGGCCTCAACTGTCAAGACCGGGAACTAATAGTGCGCACTACGTAGACGAGCACACAGGCACAGCTG
TGCTCGCCGGCCCACGGTGCCAATGCTGCCGACCCTACCGTGCATGTGTGAACATGGTTCTTTTTAGGTGTCATGTAGCA
>SNPs
----SS------------------------------S-S---SSS---S----------S---------S--------SS
S-S------S-----S--------------------------------S---S---S----------S-S----------
-SS------------------S--S-SS------SSSS-S-SS-SSS-S----------------------------S--
----S----S----------------S------------------------S----------------S-S---------
-------------------------------------S-------------------------------SS---------
--------S-----------------------------------------------------------------------
------------------------------------------------------------------S-------------
-S--------------------------S---------------------------------------------------
------------------------------S-------------------------------------------------
---------------S--------S---------------------------------S---------------------
---------------SSSS-------------------------------------------------------------
----S--------S------------------------------------------------------------------
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--------------------------------S-----------------S-----------------------------
-----------------------------------------S--------------------------------------
----------------------------------------------------------SSSSSSSSSSSSSSSSSSSSSS
SSSSSS-----------------------------------S--------------------------------------
--------------------------------------------------------------------------------
S--------------------------------S----------------------------------------------
--------------------------S--S---------------------------S----------------------
----------------------------------------S---------------------------------------
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-----------S------------------------------------------------------S-------------
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---------------------------------------------------------------------S----------
------------------------------------------------------------------------S-------
--S-------------------------S---------S-----S-----------------------------------
---S-------S------------------------------------------------------------S--S----
---------------------SSS-------------------------------S------------------------
------------SSS-----------------------------------------------------------------
------SSSSSSS-----------------------------------------------------------------S-
-------------------------------------S------------------------------------------
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---------------------------------------------------------------S-S--------------
-S----S-------------------------------------------------------------------------
-----------------------------------------------------------------------S--------
---------------------SS-S---------------------SSSSS-----------------------------
-SSSS----------------S----------------------------------------------------------
------------------S-------------------------------------------------------------
>forward_205
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-------------------------GTCGACACAGACACCTTCGT-----------------------------------
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>reverse_1270
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---------------------------------------------------------------------CCACACCATCC
GTCCATCTC-----------------------------------------------------------------------
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>forward_736
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---------------------------------------------------------------------------CACCC
AGCATCCGTTTCTTTG----------------------------------------------------------------
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>reverse_2172
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-----------CAAACACTCGTGCATCGTGC-------------------------------------------------
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