>input_sequence_65782
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-------------------------------------------------------ATGTGGCTTGGGATCTCCAATTCCA
AGCAAGGAGAAGGACAAGG------------------AGCAGTGGTCGCCATGCTTGGCCTCTGCGCCATATCCATATCC
ATGTCGATGCTGCCTCTCGCCGCACCTACCATCCACCACGGTACGGT-----ACAGTACATACATATTCTTCCCGATCGA
TGCATCTTCTCCTCCTCTCTCTCTCT----TCTTCTTGTTATGTGCTGTGCATGTGCATGTGCTTGGCTCATTGATTCTA
TTCTATCCTTTGGGATGGATGTGCAGAAGGAGGCGCTCAAGGCGGAGGGGGGAACCCAAACCCAGCCAACGCGCTGGTGG
CGCTGGTGAACGCCGACCGGGCAGCCGCCAAGCTACCCGCCCTCCGCACCACCAAGGGCCTCGGCTGCATGGCGCTGCAG
TGCATCGCCCGCTGCCTCGCCCTCTCCCCCGCCACCGCCTGCGCCGCCGACGGCACGCTGGCGCCGCCCTGCCACCCGCC
GGAGACCGACATCACCGAGGTCTACGCCGCCAATTGCGGGGTCGAGCTGCCCACGGTGGACGTCGTGTCCGGCCGCATCC
TCGGCTGCAGCAGCCAAAGCTCCGACGGCGTCAGCGGGGACGCGCTCCACATGGCCAACGCCACCGTGGTCCGCGGCAGG
GAGCACGCGCAGGTGGGCGCCGGCGTCGACCGCGGCGGCTTCTGGTGCCTCCTCTTCAGCAGCGGCAGCCCCAACTCCAG
CTTCCAGCTGGAGGCCGCCGGCAGGGGCATCGCCCAGCAGCACGGCTGCTTCAGCGACCCCGACGTCACCCTCTCCTGCA
CCACCTCCGCCGGCCACCACCAAACCGGACGACTCTCCGCCGGAGACACATCCTTTGCCTTGGTTGCTTCCACTCTGCTT
TTTCTCCTCCAGTCCAGTCTAGTCTAG-----------------------------------------------------
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>chr1A_1_TraesCS1A01G323800
GCCTGGGAGATTTTCTACCCTCATGGATGGCGGTGTGATCTTCGGATAGGATCAGCTCCTTTATAGGCTGGGCTTTATTT
ATCTTTGCTTCTGGCTTTTGGCCAGTTTATTTCGATCTTTACTTCTTTGAATTTTTGGCTGTGTGCATCTAGTTATGTAG
AGGTCGGGTGATTTTTGATGCGATTGTATCAACTCGATATTTCAATTCAATGAAAATCCCTTTTATCAAAAAAAAAGAAA
ACAAGCGTATGCGTGTGTTTAGCGGTAAAAAAGAAGCAAGTTGAAGCATGGCCGGCCTCTTGGTAAATACTACTCCCTTT
ATAAATTAATATGAGAGCGTTTAGATCACTATTCGTTTAGATTATTAAAATAATGATTTAAAAGCTTTTATATTAGTTTA
CGGAGAGAGCATTACAGTGTAGACAATAGTAGGGAAAAGAGACTCTGAACGACAGAAGCTGTTCTGTTGGTCCCCTCCCC
CCTCCCCCTCCCCTCATTTCATTTCATTTTCACTGCAGCATGCATGG-------TACTACAGCAGAGACAGTGGTAGTGG
AGGAGCCTGCTAATTTATTTGCCTGCCCAAGCCTTTCCGTGCACGGCACAGACGGATAGGATCAATTGCGTTGCGTTGC-
GTTGCGTTTGCGTTTGCGTGTCTACTGTGTACCAGTGTACGGGAAGGTGAATTGATGAGCCCTATGACTTTTCTCCGTTT
CCTTTCCGTGGAACAGAGC-AAGAGCAGAGCAGCTGCTACGCCTTCACTTTCTCCGATCTCATTT-----TCATCTCATC
TCATCCACACCAACGGACGGGCGGACCCATCTCTTCCCCAATTTCGTCGTCGTCGTCGTCGTCGTCTTCTTATT-CTTCT
TCTTTCCGTGTCCGTCCACCATTGCTGCTTATTTCTTTCTTTAATTCTTTCTGGTCATCGATCTACCTATCCTATATATC
TGCTTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTAACACTGAATGACAATGTGGCTTGGGATCTCCAATTCCA
AGCAAGGAGAAGGACAAGG------------------AGCAGTGGTCGCCATGCTTGGCCTCTGCGCCATATCCATATCC
ATGTCGATGCTGCCTCTCGCCGCACCTACCATCCACCACGGTACGGT-----ACAGTACATACATATTCTTCCCGATCGA
TGCATCTTCTCCTCCTCTCTCTCTCT----TCTTCTTGTTATGTGCTGTGCATGTGCATGTGCTTGGCTCATTGATTCTA
TTCTATCCTTTGGGATGGATGTGCAGAAGGAGGCGCTCAAGGCGGAGGGGGGAACCCAAACCCAGCCAACGCGCTGGTGG
CGCTGGTGAACGCCGACCGGGCAGCCGCCAAGCTACCCGCCCTCCGCACCACCAAGGGCCTCGGCTGCATGGCGCTGCAG
TGCATCGCCCGCTGCCTCGCCCTCTCCCCCGCCACCGCCTGCGCCGCCGACGGCACGCTGGCGCCGCCCTGCCACCCGCC
GGAGACCGACATCACCGAGGTCTACGCCGCCAATTGCGGGGTCGAGCTGCCCACGGTGGACGTCGTGTCCGGCCGCATCC
TCGGCTGCAGCAGCCAAAGCTCCGACGGCGTCAGCGGGGACGCGCTCCACATGGCCAACGCCACCGTGGTCCGCGGCAGG
GAGCACGCGCAGGTGGGCGCCGGCGTCGACCGCGGCGGCTTCTGGTGCCTCCTCTTCAGCAGCGGCAGCCCCAACTCCAG
CTTCCAGCTGGAGGCCGCCGGCAGGGGCATCGCCCAGCAGCACGGCTGCTTCAGCGACCCCGACGTCACCCTCTCCTGCA
CCACCTCCGCCGGCCACCACCAAACCGGACGACTCTCCGCCGGAGACACATCCTTTGCCTTGGTTGCTTCCACTCTGCTT
TTTCTCCTCCAGTCCAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTAGTCTGTACCAACTGAATTGTTAAGGTAGCAGAGA
CACCCCGGAAGATTCTAGTATTACTCAGACTTGTAATTTTGCTATTCAAACAGTCAGTCAGTCAGTGATGAGTGTGATTA
TTTTTCAAAACATTTGGGGTTCGTCTAAATTTGCCACTGCAAATCCAAAATGCAAA--GCACAAACAAACAAATAAGCAG
CTAGTAGTATATTTCAGTAAGTACTAGGATTGGATTGAGCACTCCATGTTCATCGTCCACAAAATACTACCTACTACATA
TATATCATCATGAGCTGATGCTGCAACTTTTTAGTAAAAAATATGTCAAGCCTACATATCTTCCTTATCAAGCCAAACTA
AATTAT---------ACAACAACAACAACAACAACAACAACAACAAGGAGAGGCGAGGCGAGGCAATTATGATCCCTTTG
GTCGAAGCGAGACACTGCAAAACAAAGGGCTGCTCCTCAGCTCACTCCACCATTTTGAGCTAGTTTTACAAGATGCTGCA
TCCTTTCTGCGACTTCCTCTTCTTCCGCTTCTGCTTCGGAGGCTGGAGAACCACCTTGATCGCCGCATCAAACACCGCCT
TGATGTTCTGCACCGTGCAACCAAATCACTAACCCAACACTACAACTAGCCTTCTTCTTCACTACTAGGAGGTGCACTCA
TTTTACCTGCTGTGTTTTTGAGCTGCACTCGACGTAGGTCGTCGCGCCAATTACCTTCTTCAGCTCTTCACCCTACAATC
ATTAGCCACAGAGATGAGATCACTATCTTATGCAAGCAAGCAACAGAACATACACATATGCTATTTATTTTCTCAAGAAG
-AAAAACAGATAAAGCTTCCGAGTACCTGAGCGGTGGAAATAGGAACAGCTCCAGGGTGATCCACGAAAAACTGCTCGTC
ATCCCGCAGATCTATTAACATGAACATAGTTGCTGAGTTATACAACATTTCTTACAGCAACAAGTAGCGAGAAAGCAGT
>chr1D_234
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-------------------------------------------------------------------------AAAGAAA
ACAAGC-AACGCGTGTGTTTGGCGGTAAAAAGGAAGCAAGTTGAAGCATGGCCGGCCTCTTGGTAAATACTACTCCCTTT
ATAAACTAATATAAGAGCGTTTAGATCACTAT--------------------------------CTCTTATATTAGTTTA
C-GAGAGAGTAGTACAGTGTAGACAGTAGTAGGAAAAAGAGACTCTGAATGACAGAAGCTGTTCTGTTGGTCCCCTC---
---CCCCCTCCCCTCATTTCATTTCATTTTCACTGCAGCATGCATGG-------TACTACAGTAAAGACAGTGGTAGTGG
AGGAGCCTGCTAATTTATTTGCCTGCCCAAGCCTTTCCGTGCACGGCACAGACGGATAGGATCAATTGCGTTGCGTTGCG
GTTGCGTTTGCGTTTGCGTGTCTACTGTGTACCAGTGTACGGGAAGGTGAATTGATGAGCCCTCTGACTTTTCTTCGTTT
CCTTTCCGTGGAACAGAGC-AGGAGCAGAGCAGCTGCTCCGCCTTCACTTTCTCCGATCTCATTT-----TCATCTCATC
TCATCCACGCCAACGGACGGACGGGCCCATCTCTTTCCCAATTTCGTCGTCCTCGTCGTCGTCTTCTTA----------T
TCTTTCCGTGTCCGTCCACCATTGCTGCTTATTTCTTTCTTTATTTCTTTCTTGTGATCAATCTACCTATC-----TATC
TGCTTCTG------------CTTCTTCTTCTTCTTCTTCTTAACACTGAACGACAATGTGGCTTGGGATCTCCATCTCCA
AGCAAGGACAAGGACAAGGACAAGGAGCGGCGGCTGTAGCAGTGGTCGCCATGCTCGGCCTCTGCACCATATCCATACCC
ATGTCGATGCTGCCTCTCGCCGCACCCACCATCCACCA-----CGGT-----ACAGTACATACATATTCTTCCCGATCGA
TCCATCTTCTCCTCCATGTCGATCGATCCATCTTCTTGTTATGTGCTGTGCATGTGC------TTGGCTCATTTT-----
---------------GGGATGTGCAGAAGGAGGCGCTCAAGGCGGAGGGGGGAACCCAAACCCAGCCAACGCGCTGGTGG
CGCTGGTGAACGCCGACCGGGCAGCCGCCAAGCTACCCGCCCTCCGCACCACCAAGGGCCTCGGCTGCATGGCGCTGCAG
TGCATCGCCCGCTGCCTCGCCCTCTCCCCCGCCACCGCCTGCGCCGCCGACGGCACGCTGGCGCCGCCCTGCCACCCGCC
GGAGACTGACATCACCGAGGTCTACGCCGCCAACTGCGGGGTCGAGCTGCCCACGGTCGACGTCGTCTCCGGCCGCATCC
TCGGCTGCAGCAGCCAAAGCTCCGACGGCGTCAGCGGGGACGCGCTCCACATGGCCAACGCCACCGTGGTGCGCGGCAGG
GAGCACGCGCAGGTGGGCGCCGGCGTCGACCGCGGCGGCTTCTGGTGCCTCCTCTTCAGCAGCGGCAGCCCCAACTCCAG
CTTCCAGCTGGAGGCCGCCGGCAGGGGCATCGCCCAGCAGCACGGCTGCTTCAGCGACCCCGACGCCACCCTCTCCTGCA
CCACCTCCGCCGGCCACCACCAAACCAGACGACTCACCGCCGGAGTCACGTCCTTTGCCTTGGCTGCTTCCACTCTGCTT
TTCCTCCTCTAGTCTAGTCTAGTAATGAA-------------------------------------TAAGCTAGCAGAGA
CACCCTAGAAGATACTAGTATTACTCGGACTTGTAACTTTGCTATTCAAACAGTCTGTCAGTCAGTGATGAGTGTGATCA
TTTTTCAAAACATTTGGGATTCATCTAAATTTGCCACTGCAAATCCAAAATGCAAAAAGCACAAACAAACAAATAAGCAG
CTAGTAGTATATTTCAGTAAGTACTAGGATTGGATTGAGCAGTCCATGTTCATCGTGTATATATAGCACACTAC---CCA
AGT-TCATCATGAGCTGCTGCTGCAACTT---AGTAAAAATTATGTCAATCCTACATATATTCCTTATCAAGCCAAACTA
AATTAT---------ACAACAA------------------------GGAGAGGCGAGGCGAGGCAATTATGATCCCTTTG
ATCGAAGCGAGACACTGCAAAACAAAGGGCTGCTCCTCAGCTCACTCTACCATTTTTGAGCTAGTTTACAAGATGCTGCA
TCCTTTCTGCGACTTCCTCTTCTTCCGCTTCTGCTTCGGAGGCTGGAGAACCACCTTGATCGCCGCATCAAACACCGCCT
TGATGTTCTGCACCATGCAACCAAATCACTAACCCAATACTACAGATAGCCTTCTTCTTCACTACTAGGAGATGCACTCA
TTTTACCTGCTGTGTTTTTGAGCTGCACTCGATGTAGGCCGTCGCGCCAATTACCTTCTTCAGCTCTTCACCCTACAATC
ATTAGCCACAGAGATGAGATCACTATCTTATGCAAGGAAGCAACAGAACATACGCATATGCTATTTATTTTCTCAAGAAA
AAAAAACAGATAAAGCTTCCGAGTACCTGAGCGGTGGAAATAGGAACAGCCCCAGGGTGATCCACGAAAAACTGCTGGTC
ATCCCGCAGATCTATTAACATCAACATAGTTGCTGAGTTATACAACATTTCTTACAGCAACAAGTAGCAAGAAAGCAG-
>chr1B_235
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--------------------------------------------------------------------------AAGAAA
ACAAGC-TATGCGTGTGTTTGGCGGTAAAAAGGATTCAAGTTAAAGCATGGCCGGCCTCTTGGTAAATACTTATATTAAT
GTCAA------------------------------------------------------AAACGCTCTTATATTATGGGA
CGGAGGGAGTATT--AGTGTAGACAGTAGTAGGAAAAAGAGACTGTGAATGACAGAAGGTGTTGTGTTGGTCCCCTC---
---CCCCCTCCCCTCC-----TTTCATTTTCACTGCAGCATGCATGCATAGTACTACTACGGTAGAGACAGTGGTAGTGG
AGGAGCCTGCTAATTTATTTGCCTGCCCAAGCCTTTCCGTGCACGGCACAGACGGATAGGATCAATTGCGTTGCGTTGCG
-------TTGTGTTTGCGTGTGTACTGTGTACCAGTGTACGGGAAGGTGAATTGATGAGCCCTCTGACTTTTCTTCGTTT
CCTTTCCGTGGAACAGAACAAAGAGCAGAGCAGCTGCTCCGCCTTCACTTTCTCCAATCTCATTTTCATCTCATTTCATC
CCATCCACGCCAACGGACGGACGGACCCATCTCTTCCCCAATTTCGTCGTCGCCGTCGTCTTCTTCTTCTTATTTCTTCT
TCTTTCCGTGTCCGTCCACCATTGCTGCTTATTTCTTTCTTTATTTGTTTCTTGTCATCAATCTACCTATCCTATCTATT
A---------------TCTTCTTCTTCTTCTTCTTCTTCTTAACACTGATTGACAATGTGGCTTGGGATCTCCAACTCCA
AGCAAGCACAAGGACAAGGA------------------GCACTGGTCGTCATGCTTGGCCTCTTCACCATATCCATATCC
ATGTCGATGCTGCCTCTGGCCGCACCCACCATCCACCA-----CGGTACGGTACAGTACATACATATTCTTCCCGATTGA
TGCATCTTCTCCTCCTCCTCTCTC------TCTTCTTGTTATGTGCCGTGCATGC---TGTGCTTGGCTCATTTATTCTA
TTCTATCCTTTGGGAGGGATGTGCAGAAGGAGGCGCTCAAGGCGGAGGGGGGAGACCAAACCCAGCCAACGCGCTGGTAG
CGCTGGTGAACGCCGACCGGGCAGCCGCCAAGCTACCCGCCCTCCGCACCACCAGGGGCCTCGGCTGCATGGCGCTACAG
TGCATCGCCCGCTGCCTCGCCCTCTCCCCCGCCACCGCCTGCGCCGCCGACGGCACGCTGGCGCCGCCCTGCCACCCGCC
GGAGACCGACATCACCGAGGTCTACGCCGCCAACTGCGGGGTCGAGCTGCCCACGGTGGACGTCGTCTCCGGCCGCATCC
TCGGCTGCAGCAGCCAAAGCTCCGACGGCGTCAGCGGGGACGCGCTCCACATGGCCAACGCCACCGTGATCCGCGGCAGG
GAGCACGCGCAGGTGGGCGCCGGCGTCGACCGCGGCGGCTTCTGGTGCCTCCTCTTCAGCAGCGGCAGCCCCAACTCCAG
CTTCCGGCTGGAGGCCGCCGGCAGGGGCATCGCCCAGCAGCACGGCTGCTTCAGCGACCCCGACGTCACCCTCTCCTGCA
CCACCTCCGCCGCCCACCACCAAACCAGACGACTCACCGCCGGAGACACATCCTTTGCCTTGGCTGCTTCCACTCTGCTT
TTCCTCCTCCAGTCTAGTCTAGTCTAGTCTAGTAATGAATAAACT-GTCTGTACCAACTGAATTGTTAAGCTAGCAGAGA
CACCCCAGAAGATACTAGTATTACTCGGACTTGTAATTTTGCTATTCAAACAGTCTGTCAGTCAGTGATGAGTGTGATCA
TTTTTCAAAACATTTGGGATTCGCCTAAATTTGCCACTGCAAATCCAAAATGCAAA--GCACAAACTAACAAATAAGCAG
CTAGTAGTATATTTCAGTAAGTACTAGGATTGGATTGAGCAGTCCAT-----------ATATATAGCACAGTACAAACCA
AGT-TCATCATGAGCTGCTGCTGCAACTT---AGTAAAAATTATGTCAATCCTACATATCTTCCTTATCAAGCCAAACTA
AATTATACAACAACAACAACAA------------------------GGAGAGGCGAGGCGAGGCAATTATGATCCCTTTG
ATCGAAGCAAGACACTGCAAAACAAAGGGCTGCTGCTCAGCTCACTCTACCATTTTGAGCTAGTTTTACAAGATGCTGCA
TCCTTTCTGCGACTTCCTCTTCTTCCGCTTCTGCTTCGGAGGCTGGAGAACCACCTTGATCGCCGCATCAAACACCGCCT
TGATATTCTGCACCAAGCAACCAAATCACTAACCCAACACTGCTACTAGCCTTTTTCTTCACTACCAGGAGATGCACTCA
TTGTACCTGCTGTGTTTTTGAGCTGCACTCGATGTAGGCCGTCGCGCCAATTACCTTCTTCAGCTCTTCACCCTACAATC
GTTAGCCACAGAGATGAGATCACTATCTTATGCAAGGAAGCAACGGAACATACGCATATGCTATTTATCTTCTCAAGG-A
AAAAAACAGATAAAGCTTCCGAGTACCTGAGCTGTGGAAATAGGAACAGCCCCAGGGTGATCCACGAAAAACTGCTCGTC
ATCCCGCAGATCTATTAACATCAACATAGTTGCTGAGTTATACAACATTTCTTACAGCAACAAGTAGCAAGAAAGCAG-
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------
------S-------------S----------S------------------------------------------------
-----S------S-------------------SSSSSSSSSSSSSSSSSSSSSSSSSSS---S---S-------------
---------S---------------S-------S---------------S---------------------------SSS
SSS-----------------------------------------------------------S-----------------
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---------------------------------------------------------------S----------S-----
--------------------------------------S-----------------------------------------
--------S-----------S------------------------------------------S----------------
-------------------------------------------S--------S------S---------------S----
------SSSSSSSSSS-----------------------------------------------------------S----
--------S--------------------------------------------------------S--------------
--------------------------S-----------SSSSS-------------------------------------
-----------------SSSSSSSSS-------------------------------S---------------S------
---------------S----------------------------------------------------------------
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---------------------------------S--------------------------------S-------------
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--------------------------S--------S---------------------------S----------------
--S-----------S------------------SSS-SS--SS--S------------------------S---------
------S------S------------S----------------------------S----------------------S-
------------------S-------------------------------------------------------------
-----------------------------------------S--------------SS-S-S-SSS-SSS----S-SSS-
SS-S-------------S-----------SSS--------S--------S------------------------------
----------------------SSSSSSSSSSSSSSSSSSSSSSSS----------------------------------
S----------------------------------------------S--------------------------------
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--------------S--------------------------------------------------------S--------
--------------------------------S-----S-----------------------------------------
------------------------------------S----------------S-------------------------S
--------------------------------------------------S-----------------------------
---------------------S----------------------------------------------S---------S
>forward_478
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----------------------------------------------------------CTGTTCTGTTGGTCCCCTCC--
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>reverse_2359
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--------------------------------------AACAACAAGGAGAGGCGAGG----------------------
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