>input_sequence_65762
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----------------------------------------------------ATGGCCATGAGCGAGCAAGATGGGCAGC
ACACCACGAACAGCCTTCCCGGGGACGCGGCGAACGGCGCCGTCGACATCGACTCCTTCTCGCAGCTCCCGTTCGTGCGG
CCCAAGCCGCCCCCGGCGATGGAGGCCGGCGGGTCGAGCCCCACGTCCTCCATCCGCCTCTTCGGCTTCGACTTCCCGCC
CGACGGGGCGGCGTCCTCCGTCACCGACGGCGATGCTGCCGCTGTCAGCTCCACCGCTCCCGGCCAGGCGGCGGCGGCGG
CATCGGCGTCGGC------------------CGGTGCAAGTGGCGGCAGCGGCGGCCGCAAGTTCGAGTGCCACTACTGC
TGCCGGAACTTCCCGACGTCGCAGGCGCTGGGGGGACACCAGAACGCGCACAAGAGGGAGCGGCAGCACGCGAAGCGCGC
GCAGTTCCAGAGCGCCATGGCCATGCAAGGCCACTACCCGGCGCACGCGTACCCCGCCTTCGGCAGCGGCTACCACCACC
GCTTCGTGGCCGGGCCGCCGCACATGGGCCGCTACGAGCCGCCGCCGCACTACCCCTCGTGGTCCAACCACCACCACCTG
GCGCCCACCATGCCAGCGGCGGCGCCCAGGTACTACGGCAGCGGCCCCGGCTCCGTGTCCCAGCCGATCAACGGCAGCCC
GGTGCCGGCGTCGGCGCTCTGGCGCGTCCCGGGCGTCAGCGTGGCGACACCAGCAGCGCCGCGGCAAGAGCGGCCAACGC
CCTTGGCTCTTGCCGGGCGTGACGACATGGCGGTGGCGTGGGAAAGAAGAGGACAAGCAGCTGGCTCGGCGTCGTCGGCG
TCATCGGCGTCGTCGTCTTCGCAGCATGAGGCCGCGCGCCACGGGGGAGAAGCCGCCGAGAACAGGGCAAACGTGAGCCT
GGATCTCACCCTGTAA----------------------------------------------------------------
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>chr5A_1_TraesCS5A01G231500
CCAATTTTTTGGGGGGCGAGGGGAGCATAATTTATTTTAAATTTTAAATATGAAGGAAATATTTTTTGATATTTTAATTG
ATGCAAATATTTATAATTTTGAAGCTTTAAAAGGAACTTCTTTTTATATTCTGGTTTTTGAATGACCAATGTGAGACACA
TATAGGTGACAAGTTTGTAAGACCAGTATAAATGGCTAAAGCCAGTTAGGGATGGTTTCATGTTAGTATTTTACCCAAAT
TTTAGGTGATGGGGCAGGACTTGTCCACTTTTAAAATTCTCGACAATAATATGTACACTCACTCGAAAGTTGAGGGTTAA
AACAAACACTCGTCCTAAGAGGACGTTGGTTTGGTTGAACTAGTCGAAAAGTTGACTAGAAAATGGGGGTGCATCTTAGC
AAAGCTAGTTTATCCGAAGGAGGATAAGGTGAGATCACGCGGTGGCTTGAGACAAATTCAAAATTTAAATTCGGATGATT
TGTGCCTTAAGTAGTAGTTTTATTTATTTATCACCCGCTTCTTTTTCTGGCAAATAATGCATTTGCATCATGATGCATCA
TATTCAGATCGGTTTTTAGATTGGTGCAGCACATAAATACAGACCCGCCACGAAAACGACAACAAATATTTATTCGAGCA
TAGAATGGAAATAGAGATATTACATAAGATGCACATAACATGGTTCAACCAATAGCACATTTCCAGTGTGACCAACAACA
CAAAAA-CATTAAACAGTTTCGTTGTCAACCCTACCTCAAAACTGGTCCCGTCCCACCCCACCCGAAGTTAACCCCTCCA
ACAAGATGGCCCATACATCAACGCGCCTAGCTAGCTCCCTAGCTCCATCGATCCCAACATATTACCATCGCGCAACAGTA
TAGGAAGACCAAGAGAAGAATCCCCTGTAGCTGCAGCGCTACCTAGCG--CCCCCTCCATCCCTAGCGCACGA-------
--CGACACTGCTTACCCTAGCTAGGAGGAGTGAGGCCAGCTCGCGCTCTCCCATGGCCATGAGCGAGCAAGATGGGCAGC
ACACCACGAACAGCCTTCCCGGGGACGCGGCGAACGGCGCCGTCGACATCGACTCCTTCTCGCAGCTCCCGTTCGTGCGG
CCCAAGCCGCCCCCGGCGATGGAGGCCGGCGGGTCGAGCCCCACGTCCTCCATCCGCCTCTTCGGCTTCGACTTCCCGCC
CGACGGGGCGGCGTCCTCCGTCACCGACGGCGATGCTGCCGCTGTCAGCTCCACCGCTCCCGGCCAGGCGGCGGCGGCGG
CATCGGCGTCGGC------------------CGGTGCAAGTGGCGGCAGCGGCGGCCGCAAGTTCGAGTGCCACTACTGC
TGCCGGAACTTCCCGACGTCGCAGGCGCTGGGGGGACACCAGAACGCGCACAAGAGGGAGCGGCAGCACGCGAAGCGCGC
GCAGTTCCAGAGCGCCATGGCCATGCAAGGCCACTACCCGGCGCACGCGTACCCCGCCTTCGGCAGCGGCTACCACCACC
GCTTCGTGGCCGGGCCGCCGCACATGGGCCGCTACGAGCCGCCGCCGCACTACCCCTCGTGGTCCAACCACCACCACCTG
GCGCCCACCATGCCAGCGGCGGCGCCCAGGTACTACGGCAGCGGCCCCGGCTCCGTGTCCCAGCCGATCAACGGCAGCCC
GGTGCCGGCGTCGGCGCTCTGGCGCGTCCCGGGCGTCAGCGTGGCGACACCAGCAGCGCCGCGGCAAGAGCGGCCAACGC
CCTTGGCTCTTGCCGGGCGTGACGACATGGCGGTGGCGTGGGAAAGAAGAGGACAAGCAGCTGGCTCGGCGTCGTCGGCG
TCATCGGCGTCGTCGTCTTCGCAGCATGAGGCCGCGCGCCACGGGGGAGAAGCCGCCGAGAACAGGGCAAACGTGAGCCT
GGATCTCACCCTGTAATTCTCCAAGAACGGCGCGGTTAACTAATTAGCGGGCTCGTGAAGCCTAAGAACGAAGGTTAATT
CTCTTTTTTTTCCCTCTAGCTCGTGAATTCGTTTAGCTCGATCGATCAGCGGAGAGATTCTTTTTCCTTGGGTGTCAATT
TTTTGCAGTGTTTTTCTTTCTCCTACTAGAGTACGCACTCATTCGTCCTGCTCTTCTCGCATCGCTTTAGATTGCTTTGT
AAGGAAAAACGGAGGGGAAATAAATGGAACGAAAGGGAAAACGGGGAGTGTTGTCATTTTCATATCC---TTATTAAGCA
CATTTTCCAGCCATTTTTAATCCTCCTCTACTAATTTCACATCGATAGGTATATATGGGCCGATGCATATGTCTGTCCTA
GCACTAATTTTCTGGTGCGTCTCTCTGTCCATTCAAACCAAAAGTTGCCCTTTCTTCCTCTAGGGACTTGTCTCCATCCT
CGAAATGCTATTCAGTTTTTGCCACTTTAGCTGACAGTTATCCTTATCATTTGCTTTTTGGAGTAGCGCCAGCATGCAGC
---------------------A-CCTAGCGGTTGCTGACAGCATTTACTCCGAGGTTTTGCCCAAAGACGCAAGGCCGGC
CTAACGAATGTCCATGCGCTGCTTGCCACTTGAATGATTCCTGCCTGCAAATTGACCGTGCATGCATTTCCCAGCTACCG
AATTGATTGTCTCCACAGTGTCGAACTGTTATTCTCGGGCATCCGAAAGTGGGTGCTCCTTGGATCCAAGATTTAGGATC
CATCTGTGGATTCTACCTCCTTTTGGCAACATAATGCAGACTAGCGTGTGTTGCCCACGGAAACTGTGCTGGGCAGTGAT
GCATCTGCACAAATCTGAAGGGGCACTCGCAACATGCACAGCAGTAACAGCACCTGCCCATGCACATCGTCTATGCGTGC
ATCCGCGCGTGAATGTGACATGCGCATCCACCAGTCCTTGTGTTTGCTTAACCTATTCGCTATGACATTCACACACACAT
A
>chr5D_21
--------------------GGGAGCTTAATTTATTTTTAATTTTAAATATGAAGGAAATATTTTTTGATATTTTAATTG
ATGGAAATATTTATAATTTTGAAGCTTTAAAAGGAACTTCTTTT-ATATTTTGGTTTTTGAATGAGAAGTGTGAGACACA
TATAGGTGACAAGTTTCTATGACCAGTA--AATGGCTAAAGCCAGTTAGAGATGGTTTCATGTTAGTATTTTCC---AAA
TTTAGGTGATGGGGTGGGACTTGTCCACTTTTAAAATTCTCGACAATAATATGTACACTCGCTCGATAGTCGAGTGTTAA
AACACACACTTGTCCTAAGAGGACATTGGTTTGGTTGAACCAGTCGAAAAGTGGACCAGAAAATGGGGGTGCATCTTAGC
AAAGCTAGTTTATCCGAAGGAGGATAAGGTCAGATCACGCGGAGGCATGAGACAAATTCAAATTTTAAATTTGGATGATT
TGTGCCTTAAGTAGTAGTTTTATTTATTTATTACCCGCTTCTTTTTCTGGCGTCATGATGC-----------ATGTATCA
TATTCAGATTGGTTTTTAGATTGGTGCAGCACATAAATACAGATCCGCCACGAAAACGACAACAAATATTTATTCGAGTA
TAGCATGGAAATAGAGATATTACATAAGATGCACATAACATGGTTCAACCAATAGTACATTTCCAATGTGACCAACTACA
CAAAAACCATTAAACAGTTTCGTTGTCAACCCTACCTCAAAACTGGTCCCGTCCCACCCCACCCGAAGTTAACCCCTCCA
ACAAGATGGCCCATACATCAACGCAGCTAGCTAGCCCCCTAGCTCCGTCGATCCCAACATATTACCATCTCGCAACAGTA
CAGGAAGACCAAGAGAAGAATCCCCTGTAGCTGCAGCGCTACCTAGCGTCCCCCCTCCATCCCTAGCGCGCGACACGGCT
GGCGACACTGCTTACCCTAGCTAGGAGGAGTGAGGCCAGCTCGCGCTCTTCCATGGCCATGAGCGAGCAAGATGGGCAGC
ACGCCACGAACAGCCTTCCCGGGGACGCGGCGAACGGCGCCGTCGACATCGACTCCTTCTCGCAGCTCCCGTTCGTGCGG
CCCAAGCCGCCCCCGGCGACGGAGGCCGGCGGGTCGAGCCCCACGTCGTCCATCCGCCTCTTCGGCTTCGACTTCCCGCC
CGACGGGGCGGCGTCCTCCGTCACCGACGGCGATGCTGCCGCTGTCAGCTCCACTGCTCCCGGCCAGGCGGCGGCGGCT-
-----GCGTCGGC------------------CGGTGCAAGTGGCGGCAGCGGCGGCCGCAAGTTCGAGTGCCACTACTGC
TGCCGGAACTTCCCGACGTCGCAGGCGCTGGGGGGACACCAGAACGCGCACAAGAGGGAGCGGCAGCACGCGAAGCGCGC
GCAGTTCCAGAGCGCCATGGCCATGCAAGGCCACTACCCCGCGCACGCGTACCCCGCCTTCGGCAGCGGCTACCACCACC
GCTTCGTCGCCGGGCCGCCGCACATGGGCCGCTACGAGCCGCCGCCGCACTACCCCTCGTGGTCCAACCACCACCACCTG
GCGCCCACCATGCCAGCGGCGGTGCCCAGGTACTACGGCAGCGGCCCCGGCTCCGTGTCCCAGCCGATCAACGGCAGCCC
GGTGCCGGCGTCGGCGCTCTGGCGGGTCCCGGGCGTCAGCGTGGCGACACCAGCAGCGCCGCGGCAAGAGCGGCCAACGC
CCTTGACTCTTGCCGGGCGTGACGACATGGCGGTGGCGTGGGAAAGAAGAGGACAAGCAGCTGGCTCGGCGTCGTCGGCG
TCATCAGCGTCGTCGTCTTCGCAGCATGAGGCCGCGCGCCACGGGGGAGAAGCCGCCGAGAACAGGGCAAACGTGAGCCT
GGATCTCACCCTGTAATTCTCCAAGAACGGCGCGGTTGATTAATTAGCGGGTTCGTGAAGATTATGAGCGAAGGTTAAT-
-TCTTTTTTTTTTCTCTAGCTCGTGAATTCGTTTAGCTCGATCGATCAGCGGAGAGATTCTTTTTCCTTGGGTGTCAATT
TTTGCAGTG--TTTTTCTTCCTCCT----AGTACGTACTCATTCGTCCTGCTCTTCTCGCATCGCTTTAGATTGCTTTGT
AAGGAAAAACGGAGGGGAAATAAATGGAATGAAAGGGAAAATGGGGGGTGTTGTCATTTTCATATTC---TT---GAGAG
CATTTTCCAGCCATTTTTAATCTTCTTCTACTAATTTCACATCGATAGGTATATATGGGCCGATGCATATGTCTGTCCTA
GCACTAATTTTCTGGTGCGTCTGTCTGTCCATTCAAACCAAAAGTTGCCCTTTCTTCCTCTAGGGACTTGTCTCCATCCT
CGAAATGCTATTCAGTTTTTGCCACTTTAGCGGACAGTTATCCTTATCATTTGCTTTTTGGAGTAGTGCCAGCATGCAGC
GCTGCGGCAGCTGCTAGCACCGGCCTAGCGGTTGCTGACAGCATTTACTCCGAGGTTTTGCCCAAAGACGCAAGGCCAGC
CTAACGAATGTCCATGCACTGCTTACCACTTGAATGATTCTTGCCTGCAAATTGACCATGCACGCATTTCCCAGCTACCG
AATTGATTGTCTCCACAGTGCCGAACTGTTCTC----GGCATCCGAAAGTGGATGCTCCTTGGATTCAAGATTTAGGATC
CATCTGTGGATTCTATCTCCTTTTGGCAACATAATGCAGACTAGTCTGTGTTGCCCACGGAAACTGTACTAGGCAGTGAT
GCATATGCACAAATCTGAACGGGCACTCCCAACATGCACAGCAGTAACAGCACCTGCCCATGCACATCGTCTATGCGTGC
ATCGGGGCATGAATGTTGCATGTGCATCCACCAGTCCTTGTATTTCCTTAACCTACTCGCTATGATATCCACACACA---
-
>chr5B_34
---------------------------------ATTTTAAATTTTAAATATCAATGAAGTATTTTTTGGTATTTTAATTG
ATGGAAATATTTATAATTTTGAAGCTTTAAAAGGAACTTCTTTTTATA-TCTGGTTTTTGAATGAGAAGTGTGAGACACA
TATAGGTGACATGTTTCTAAGACCA--------GGCTAAAGTGAGTTAGGGATTGGTTCATGTTAGTATTTTACCCAAAT
TA-AGGTGATGGGTAGAAT-TTATCCACTTTTAAAATTCTCGACGATAATATGTACACTCACCCGATAGTTGAGGGTTAA
AACACACACTTGTCCTAAGAGGGCATTGGTTTGGTTGAACCAGTCGAAAAGTTGACTAGAAAATGGGGGTGCATCTTAGC
AAAGCTAGTTTATCCGAAGGAGGATAAGGTCAGATCACGCGGTGGCCAGAGACGAATTCAGAATTTAAATTTTGATGATT
TATGCCTTAAATTGTAGTTTTATTTATTTATCACTCGCTTCTTTTTGT-------------TTGGCATCGTGATGTATCA
TATTCAAATTGGTTTTTAGATTGGTGCAGCACATAAATACAGATCCGCCGCGAAAACGACAACAAATATTTATTCGAGCA
TAGCATGGAAATAGAGATATTACATAAGATGCACATAACATGGTTCAACCAATATTACATCTCCAATGTGACCAACAACA
CAAAAA-CATTAAACAGTTTCGTTGTCAACCCTACCTCAAAACTGGTCCCGTTCCACCCCACCCGAAGTTAACCCCTCCA
ACAAGATGGCCCATACATCAACGCAGCTCCCTAGCTCCGCAGCTCCATCGATCCCAACATATTACCATCGCGCAACAGTA
TAGGAAGACCAAGAGAAGAATCCCCTGTAGCTGCAGCGCTACCTAGCG--CCCCTTCCATCCCTAGCGCACGACACGGCT
GGCGACACTGCTTACCCTAGCTAGGAGGAGTGAGGCCAGCTCGCGCTCTCCCATGGCCATGAGCGAGCAAGATGGGCAGC
ACGCCACGAACAGCCTTCCCGGAGATGCGGCGAACGGCGCCGTCGACATCGACTCCTTCTCGCAGCTCCCGTTCGTGCGG
CCCAAGCCGCCCCCGGCGATGGAGGCCGGCGGGTCGAGCCCCACGTCGTCCATCCGTCTCTTCGGCTTCGACTTTCCACC
CGACGGCGCGGCCTCCTCCGTCACCGACGGCGATGCTGCCGCTGTCAGCTCCACTGCTCCCGGCCAGGCAGCGGCGGCG-
-----GCGTCGGCGTCGGCGTCGGCGTCGGCCGGTGCAAGTGGCGGCAGCGGTGGTCGCAAGTTCGAGTGCCACTACTGC
TGCCGGAACTTCCCGACGTCGCAGGCGCTGGGAGGACACCAGAACGCGCACAAGAGGGAGCGGCAGCACGCGAAGCGCGC
GCAGTTCCAGAGCGCCATGGCCATGCAAGGTCACTACCCCGCCCACGCGTACCCCGCCTTCGGCAGCGGCTACCACCACC
GCTTCGTCGCCGGGCCGCCGCACATGGGCCGCTACGAGCCGCCGCCGCACTACCCCTCGTGGTCCAACCACCACCACCTG
GCGCCCACCATGCCAGCGGCGGTGCCCAGGTACTACGGCAGCGGCCCCGGCTCCGTGTCCCAGCCGATCAACGGCAGCCC
GGTGCCGGCGTCGGCGCTCTGGCGGGTCCCGGGCGTCAGCGTGGCGACACCAGCAGCGCCGCGGCAAGAGCGGCCAACGC
CCTTGACTCTTGCCGGGCGTGACGACATGGCGGTGGCGTGGGAAAGAAGAGGACAAGCC---GGCTCGGCGTCGTCGGCG
TCATCAGCATCGTCGTCTTCGCAGCATGAGGCCGCGCGCCACGGGGGAGAAGCCGCGGAGAACAGGGCAAACGTGAGCCT
GGATCTCACCCTGTAATTCTCCAAGAACGGCGCGGTTGATTAATTAGCTGGTTCGTGAAGACCAAGAACGAAGGTTAAT-
-TCTTTTTTTT--CTCTAGCTCGTGAATTCGTTTAGCTCGATCGATCAGCGGAGAGATTCTTTTTCCTTGGGTGTCAATT
TTTGCAGTG--TTTTCTTTCTCCTACTAGAGTACGTACTCATTCGTCCTGCTCTTCTCGCATCGCTTTAGATTGCTTTGT
AAGGAAAAACGGAGGGGAAATAAATGGAACGAAAGGGAAAATGGGGAGTGTTGTCATTTTCATTTTCATATTCTTGAGCA
CATTTTCCAGCATTTTTAATCTTCTTTCCAA----TTCGCATCGATAAGTATATATGGACTGATGCATATGTCTGTCCTA
GCACTAATTTTCTGGTGCGTCTGTCCGTCCATTCAAACCAAAAGTTGCCCTTTTTTCCTCTAGGGACTTGTCTCCATCCT
CGAAATGCTATTCAGTTTTTGCCACTTTAGCTGACAGTTATCCTTATCATTTGCTTTTTGGAGTAGTGCCAGCATGCAGC
GCTGCGGCAGCTGCTAGTAGCA-CCTAGCGGTTGCTGACAACATTTACTCCGAGGGTTTGCCCAAAGACGCAAGGCCAGC
CTAACGAATGTCCATGCGCTGCTTACCACTTGAATGATTCTTGCCTGCAAATTGACCATGCATGCATTTCCCAGCTACCG
AATTGATTGTCTCCACAGCGTCGAACTGTTCTC----GGCATCCGAAAGTGGGTGCTCCTTGGATTCAAGATTTAGGATC
CATCTGTGGATTCTATCTCCTTTTGGCAACATAATGCAGACTAGTGTGTGTTGCCCACGGAAACTGTACTAGGCAGTGAT
GCATATGCACAAATCTGAGCGGGCACTCCCAACATGCACAGCAGTAACAGCACCTGCCCATGCACATCGTCTATGCCTGC
ATCCGCGCATGAATGTGACACGTGCATCCACCAGTCCTTGTATTTCCTTAACCTACTCGCTATGATATACACACACATA-
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>SNPs
SSSSSSSSSSSSSSSSSSSS------S-----------------------------------------------------
---S-------------------------------------------------------------SS-S-----------
----------------S-----------SS--------------------------------------------------
--------------SS--------------------------------------------------S-------------
----S-----S-------------S---------------S---------------------------------------
------------------------------S---------------S------------------------S--------
---------------------------------------------------SSSSSSSSSS--S-----S-----S----
---------S---------------------------------S------------------------------------
---S---------------------------------------------------S---------S--------------
--------------------------------------------------------------------------------
------------------------SS------------------------------------------------------
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--S-----------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
------------------------------------------------------S------------------------S
SSSSS---------------------------------------------------------------------------
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---------------------------------------S----------------------------------------
-------S------------------------------------------------------------------------
----------------------S---------------------------------------------------------
------------------------S-------------------------------------------------------
-----S--------------------------------------------------------------------------
-----S--------------------------------------------------------------------------
-------------------------------------S-S-----------S--------S------------------S
S----------SS-------------------------------------------------------------------
---SSSSSSSS------------------------S--------------------------------------------
-----------------------------------------S-----------------------S------S--S----
----------------------S--S------------------------------------------------------
----------------------S---------------------------------------------------------
------------------------------------------------------------------S-------------
-----------------------------------------------------------------------------S--
------------------------S---------------S----------------S----------------------
------------------------------S-SSSSS----------------------------S--------------
---------------S----------------------------S----------------------S--S---------
----S--------------S--------S---------------------------------------------------
--------S-------------S------------------S---S---------S---------S--S--------S-S
S
>forward_532
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--------------------------------ACCCGCTTCTTTTTCTGGCA----------------------------
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>reverse_2558
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-----------------------------------------------------------------------------GGC
CTAACGAATGTCCATGC---------------------------------------------------------------
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