>input_sequence_65729
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-------------------------------------------------------ATGGCCGTGTCCGAGCTGGAGGTCG
ACGGCGTCGTCTTCCCGCCGCTCGCCCGCCCGCCGGGCTCCGAGCACGCCCACTTCCTCGCCGGCGCAGGTAATCTGTTC
GTCAACGCCTCCGGGGGGGTGCGACTTTAGATTCTGTTTTAACGTA-----TCTGGTGTTGGTCGGTTGAGATACTCCTA
CTAGATTATTATTACGTATTCAACTGTGTGCTCTGCTCTCGAGGCGTGCAGGCGTGCGGGGCATGGAGATCGGGGGCAAG
TTCATCAAGTTCACGGCCATCGGCGTCTACCTGCAGGCCGACGCCGCCGTCCCCGCGCTCGCCGCCAAGTGGGCCGCCAA
GCCCGCCGCCGACCTCGCCTCCGACGCTGCCTTCTTCCGCGACGTCGTCACCGGTAACTAATTCACGTACTACAACCGTC
GACAGTTCCACTTCCACAACG----------TGCAATAACCAGTGGCCGGCGATGCAGGCGAGTTCGAGAAGTTCACGAG
GGTGACGATGATCCTGCCGCTGACCGGCGCGCAGTACTCGGACAAGGTGACGGAGAACTGCGTCGCCTACTGGAAGGCCA
CCGGCGTGTACACGGACGCCGAGGCCGCCGCCGTCGACAAGTTCAAGGAGGCCTTCGGACCCCACAGCTTCGCCCCCGGC
GCCTCCATACTCTTCACCCACTCCCCCGCCGGCGTCCTCACCGTCGCCTTCTCCAAGGACTCGTCCGTGCCGGAGTCCGG
CGGCGTGGCCATCGACAACGCCCGGCTCTGCGAGGCCGTGCTGGAGTCCATCATCGGCGAGCACGGGGTGTCGCCTGCGG
CCAAGCTCAGCCTGGCCACCAGGGTCGCCGAGCTGCTGAAGGGGGCCTCCCACGCCGGCGGCGAGCCGGCTGCGGAGCCC
GTGTCGGTTTCGGTGTGA--------------------------------------------------------------
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>chr5B_1_TraesCS5B01G488900
GCACAGGCGGCCGCACCCCCGCGGCGGCACAGCCCGCACCTGACATGAACACCCTCCGGAACACGGCGTTCCCCTGGGCC
GGTCCTGCGCCGGCACTCATCAACCTCACGAACCACGAGGACGATGACGACGCCTAGGGCAGCGCACCGCCTCGTAGTTT
AGTTTGTTTTTAGTTTTCTTTAATACAAATGTGGACGCGTGGACTCTCGCCGGCCTTCCTGGTCGGCTTTAATGTTTGAT
TACTGTTATTTTTATTTTAAATATGCATGTGTACTTTCTTTTCTCGTGTCGTCAAAATGTGTCGAGCCAACATTGGGCGC
ATGCGCTGACCCAAATGCGAAAACGGACGTTCGTGTCCGTCTGGCGGACCCAAACGGACAAAAAGCGAACAAAATCACCG
TCCGTTTGGGTCGGCACCGTTGGAGTTGCTCTAATCCTTATTAATTCATGCCTGAGGTAGGCGGAACATTACTCTTGCCT
ACCCCGTAGGGTGGTTTCTTTTGAGATCGGTGTGCTTTGGTGACATGTTGAGCCGTTGTGTCTGGTGTGGGCTCGTGCGT
GAGTTGAATGGTAGCT----TGACGTCGCCGCAAAACCTGGCGCGCGGCCACGTCCGTCCTCTCTTTGCCCCTCAACGTG
CCTCTCCCAACTACCACTAACCACGCCCCCATATGCGCACACAAACTACATCTTTGCCACAAGGCACAAGGTCCACCCTC
CGTTACCGTCTAGTCTAGGCCGCGTAGGCCAGAGAACCAGACCAGATTACAGCCGTGGCACAATCGCAATTACGGGCAGA
GTGTACGGGCGTTTATATAGCTGTTGCGGTGTCATATAGGGGGGGCACGCACCACCACCCCAGCTACCCATCCCGTGCGC
CCACGCCTCGCCAGATCGCACCTACCCTGCCGC-----CCTGCCCCCGTCCCATCAATACAAGTGTTTGCTCGCTACGTG
CCGTCCGTCGTCTCCGGAGACCCTCCATCCATCCATCCGGCGATATACC------ATGGCCGTGTCCGAGCTGGAGGTCG
ACGGCGTCGTCTTCCCGCCGCTCGCCCGCCCGCCGGGCTCCGAGCACGCCCACTTCCTCGCCGGCGCAGGTAATCTGTTC
GTCAACGCCTCCGGGGGGGTGCGACTTTAGATTCTGTTTTAACGTA-----TCTGGTGTTGGTCGGTTGAGATACTCCTA
CTAGATTATTATTACGTATTCAACTGTGTGCTCTGCTCTCGAGGCGTGCAGGCGTGCGGGGCATGGAGATCGGGGGCAAG
TTCATCAAGTTCACGGCCATCGGCGTCTACCTGCAGGCCGACGCCGCCGTCCCCGCGCTCGCCGCCAAGTGGGCCGCCAA
GCCCGCCGCCGACCTCGCCTCCGACGCTGCCTTCTTCCGCGACGTCGTCACCGGTAACTAATTCACGTACTACAACCGTC
GACAGTTCCACTTCCACAACG----------TGCAATAACCAGTGGCCGGCGATGCAGGCGAGTTCGAGAAGTTCACGAG
GGTGACGATGATCCTGCCGCTGACCGGCGCGCAGTACTCGGACAAGGTGACGGAGAACTGCGTCGCCTACTGGAAGGCCA
CCGGCGTGTACACGGACGCCGAGGCCGCCGCCGTCGACAAGTTCAAGGAGGCCTTCGGACCCCACAGCTTCGCCCCCGGC
GCCTCCATACTCTTCACCCACTCCCCCGCCGGCGTCCTCACCGTCGCCTTCTCCAAGGACTCGTCCGTGCCGGAGTCCGG
CGGCGTGGCCATCGACAACGCCCGGCTCTGCGAGGCCGTGCTGGAGTCCATCATCGGCGAGCACGGGGTGTCGCCTGCGG
CCAAGCTCAGCCTGGCCACCAGGGTCGCCGAGCTGCTGAAGGGGGCCTCCCACGCCGGCGGCGAGCCGGCTGCGGAGCCC
GTGTCGGTTTCGGTGTGAACGAACCGG------TGCACCGCGCGTCCGTCACTCGTGTGGTGGTTTGTGTGGCTGGTGGT
GTTCGTGGTGGGACGTCGTGTTCCCTCCAGTTGCCTACGGTTTGTCGGTTTTCTTCCCTGCACATGCAACCGTGC-----
---GTGGATAACTATGAGTCTGTGATGATTTGTACTTGGATTAATAAAAAAACCTGCCGTTCTTTACATCTTAGATTTGC
TGACGGAGGGACAGTTTTAGTTTTATGTATACGTGTTTTTTAAACACGAACACTTTATTTGTTAGAAAAAAATGACATT-
--TTTATGTGGAGGGATGC-ATTTCACTCACAGGCTCCTCAAATCAAACCAACCAGAAGTTGGAAAAACCCTGACTAACC
TAGCAAGTTCATGAGC-ACGTTATTTGCTTCTCTATAACACAATGTTCATATCTAAAGATAAC--AAAATCACAAGCAAT
ATGATAACAATCATCGAATATTGCCGCTAACGCTCCCATGGAGTGTCCTTCATTCCTCATAGCATAGATAACCTCCAAAT
TATCAGAGTTTACCACAAGAAGATTGCAATCCAGCCTTTGCGCAAGTGTTAGGCCAAATATGAGTGCCAAAGCTTCAGCC
ATCATGACGTCCATGCATCAGTAACCCTCAGGACCGCACCAGCCGTTCCTCGCAACAAGTCTTAGTCAAAAGAAGCGTCA
ACGTTAAGCTTAACAAAACCCATGGAACGCCTGGTCCATCCACCTCTTTTTATGGTAGCGTTTGGGGAGTGCATAACAGT
AAAGTTGAAAGTAATAGCACGAATCCCCATGAAAATCTGACAAGAATCTTGGATTATATCCTCATGAACCAATTTATGCC
TGACCCATCACAAATACCAAGCAGTTATGGCGATTATCTCACGAGCGTTCTTGACCAG----------------------
--CAACATGAGTAATAACTCCAGAACCGCTTCACCAGCTTGATCAACCTCACATGCTCTTCTAACAATTTCATCAAAACC
CTATCTCGGCTCTCGCATCGATG
>chr5A_540
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-----------------------------------------------------------GTCTCGTCTGGGCTCCTGCGT
GAGTTGAATGGTAGCTCGCTTGACCTCGCCGCAAAACCTGGCGCGCGGCCACGTCCGTCCT----------CTCAACGTG
CCTCTCCTAACTACCACTAACCACGCCCCCAGACGCGCCCACAAACTACATCTTTGCCACAAGGCACAAGTTC-ACCCCC
CGTCTA--------------CGCGTAGGCCAAAGAACTAGACCAGATTACGGCCGTGGCATAATCGCAATTACGGGCAGA
GTCCACGGGCGTTTATATAGCCGCTGGGGTGTCATATAGGAGAGG---GCACCACCACCCCAGCTGACCATCCCGTGCGC
CCACGCCTCAACAGATCGCACCTACCCTGCCGGGCCGGCCTGCCCCCATCACATCAATACAAGCGTTCGCTCGCTACGTG
----CCGTCGTCTCCGGAGACCCTCCGCGCACC-------------ACCGAGACCATGGCCGTGTCCGAGCTCGAGGTCG
ACGGCGTCGTCTTCCCGCCGCTCGCCCGCCCGCCGGGCTCCGAGCACGCCCACTTCCTCGCCGGCGCAGGTGATTATTCA
GTCAACGGCTCCGGGA-C-TGCGACCTTAGATTCCGTTTTAGCGTATATCGTCTGGTGTTGGTCGGTTGAGATG------
CTAGATTTTTAT----TATTCAACCGTGTGCTCTGCTCACGGCGCGTGCAGGCGTGCGCGGCATGGAGATCGGCGGCAAC
TTCATCAAGTTCACGGCCATCGGCGTCTACCTGCAGGCCGACGCCGCCGTCCCCGCGCTCGCCGCCAAGTGGGCCGGCAA
GCCCGCCGCCGACCTCGCCTCCGACGCCGCCTTCTTCCGCGACGTCGTCACCGGTAACTAATCCACATACGTACACACAT
ACC---TCCGCTTCCACACCG----------TGCAATAACCAATGGCCGGCGGTGCAGGCGAGTTCGAGAAGTTCACCAG
GGTGACCATGATCCTGCCGCTGACGGGCGCGCAGTACTCGGACAAGGTGACCGAGAACTGCGTCGCCTACTGGAAGGCCA
ACGGCGTGTACACGGACGCCGAGGCCGCCGCCGTCGACAAGTTCAAGGAGGCCTTCGGGCCCCACAGCTTCGCCCCCGGC
GCCTCCATACTCTTCACCCACTCACCCGCCGGCGTCCTCACCGTGGCCTTCTCCAAGGACTCGTCCGTGCCGGAGTCCGG
CGGCGTGGCCATCGAGAACGCCCGGCTCTGCGAGGCCGTGCTGGAGTCCATCATCGGCGAGCACGGGGTGTCGCCTGCGG
CCAAGCTCAGCCTGGCCACCAGGGTCGCCGAGCTGCTCAAGGGGGCCGCC------GGCGGCGAGCCGGCCGTGGAGCCC
GTGTCGGTTTCGGTGTGAATGAACAGGG------GCACCGCGCGTCCGTCACTGGTGTGGTGGCTTGTGTGGCTGGTGGT
GTCCGTGGTGGGAGGTCGTGTTCCCTCCAGTTCCTCACGGTTTGTCGGTTTTCTTCCCTGCATATGCAACCATGTGTGGA
TAAGTGGATAACTATGAGTCTGTGATGATTT--ACTTGGATTAATAAAGAAATCTGCCCTTCTTTACATCTTA-------
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>chr5D_549
GGGACT--------------------------------------------------------------------------
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-------------------------------------------------------------------------CGTGCGT
GAGTTGAATGGTA----GCTTGACCTCGCCGCAAAACCTGGCGCGCGGACACGTCCTCTCTC----TGCCCCTCAACGTG
CCTCTCCTAACTACCACTAACCACGCCCCCAGATGCGCCCACAAACTACATCTCTGCCACAAGG-ACAAGGTCCACCCCC
CGTCACCGTCTAGTCTAGGCCGCGTAGGCCAGAGAACCAGACCAGATTACGGCCGTGGCATAATCGCAATTACGGGCAGA
GTCGACGGGCGTTTATATAGCTGTTGCGGTGTCATATAGGGGGGGCACGCACCACCACCCCAGCTACCCATCCCGTGCGC
CTACGCCTCGCCAGATCGCACCTACCCTGCCGG-----CCTGCCCCCATCACATCAATACAAGTGTTCGCTCGCTACGTG
----CCGTCGTCTCCGGAGACCCTCCGTGCACC-------------ACC------ATGGCCGTGTCGGAGCTCGAGGTCG
ACGGCGTCGTCTTCCCGCCGCTCGCCCGCCCGCCGGGCTCCGAGCACGCCCACTTTCTCGCCGGCGCAGGTAACTATTCC
GTCAACGGCTCCGGGGTC-TGCGACTTTAGATTCTGTTTTAACGTACGTA-TCTGGTGTTGGTCGGTTGAGATA------
CTAGATTATTAT----TG---AACCGTGTGCTCTGCTCTCGGCGCGTGCAGGCGTGCGGGGGATGGAGATCGGGGGCAAC
TTCATCAAGTTCACGGCCATCGGCGTCTACCTGCAGGCCGACGCCGCCGTCTCCGCGCTCGCCGCCAAGTGGGCCGGCAA
GCCCGCCGCCGACCTCGCCTCCGACGCCGCCTTCTTCCGCGACGTCGTCACCGGTAACTAATTAACACGGTAACTCTCTG
TGTTGCACTGTTGCTTGACACGCTGCTGCGCTGCAATAACCAATGGCCGGCGATGCAGGCGAGTTCGAGAAGTTCACGAG
GGTGACGATGATCCTGCCGCTGACGGGCGCGCAGTACTCGGACAAGGTGACGGAGAACTGCGTCGCCTACTGGAAGGCCA
CCGGCGTGTACACGGACGCCGAGGCCGCCGCCGTCGACAAGTTCAAGGAGGCCTTCGGGCCCCACAGCTTCGCCCCCGGC
GCGTCCATCCTCTTCACCCACTCCCCCGCCGGCCTCCTCACCGTCGCCTTCTCCAAGGACTCGTCCGTGCCGGAGTCCGG
CGGCGTGGCCATCGACAACGCCCGGCTCTGCGAGGCCGTGCTGGAGTCCATCATCGGCGAGCACGGGGTGTCGCCGGCGG
CCAAGCTCAGCCTGGCCACCAGGGTCGCCGAGCTGCTGGAGGGGGCCGCCCTCGCCGGCGGCGAGCCGGCCGCGGAGGCC
GTGTCGGTTTCGGTGTGAACGAACCGGGGGGCATGCACCGCGCGTCCGTCACTGGTGTGGTGGCTTGTGTGGCTGGTGGT
GTCCGTGGTGGGACGTCGTGTTCCCTCCATTTCCTCACGGTTTGTTGGTTTTCTTCCCTGCACATGCAACCATGC-----
---GTGGATAACTATGAGTCTGTGGTGATTT--ACTTGGATTAATAAAGAAAC---------------------------
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>chr3B_2158
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-----------------------------------------AAACATGAACACTTTATTCATTAGAAATAACAATTACAT
TGTTTATGAGGAGGGATACGATTTCACTCACATGCTCCTCAAACCAAT-----CAGAAGTTGGGAAAACTCTAGCTAATC
GAGCAAGTTCATGAGCAACTTTATTTGCTTCTTTATAACA--ATGTTCAAACCTAGAGATAGTAAAAAATCACAAGCAAT
ATGATAAAAATCATCGAATACTGCC------GCTGCCGTTGAGTGTCCTCCATTCCTCATAGTATCGATAACCTCCAAAT
TATCAGAGTTTACCACAGGAGGATTCCAACCCACCTTTTGCAAAAGTGTTAGGCCAAATATGAGTGTCAAAGCTTTAGCC
GTCAGGACGTCCATGCACCAGTCGATTCTCCAATCCCGCCAACGATGAGGGTACCTCTTCATCCCTGAAGACTGC-----
---------------------------------------CCAACTCTTTTCTCGGTAGCGTTTGGGGAGTGCGCAATAGT
AAAGTTTAAAGTAATAGTATGAATCCCCATGAAAATCTGACAAGAATCTTGGATTATTTCCTCATGAACCAG-TTACGCC
CAACCCATCACAAATACCAAGTAGTTATGCCGATCATCTCACGAGCGTTCTTGATCCCCAAAATAGACAGATCATGGCAA
GACAACATGAGTAAGAACTCCAAATTCGCTTCACCAGCTCGATCAACCTCACATGCTCTTCTAACAATTTCGTCAAAACC
C----------------------
>SNPs
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S--S-------------
------------------------S-------------------------------------SSSS--------------
-------S-----------------------S------S---------------------------------------S-
---S----------------------------------------------S---------S-------------------
--SS----------------------------------------------------------------------------
--------------------------------S--------------S--S----------------S------------
SSSS----------------------S-S--S-SSSSSSSSSSSSS--------------------------S-------
--------------------------------------------------------------------------SSS-S-
-------S--------SSS-------------------------------------------------------SSSSSS
------------SSSS--------S----------------SS------------------------------------S
----------------------------------------------------------------------------S---
---------------------------S--------------------------------------S-----SS--SS-S
SS-S-S---S--------S-----------------------S-------------------------------------
------------------------S-------------------------------------------------------
----------------------------------------------------------S---------------------
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-----------------------------------------------S---S------------------S---------
-----------------------------------------------------S---------S----------------
--S-----------------------------S-SS-----------------------------------S--------
-------------------------------SS---------------S---------S--------------SSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S------------SS-------S--SSSSS-SS-
--------S--------S--------------S----------S---SSSSSS----------S-----S--SS----S-
S------------------S------------S-------SS-------S-S---S-----SS-----------------
-------S------------S----SSSSSS---S--S-S---------S------------S--S--------------
-----------------S--S----S---S---S-S-----SS-----------------------S--------S----
S---S------------S----SSSSSSSSSS-S-S-S---S-SS-SSSSSSSSSSSSSSS-SSS-S--S-SSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S-------SSS-------------------SS--S---
------S----------S-S-------------------------------------S-------------SS---S---
SS-------------------S-------S----S-------------------S-SS----------------------
--------------S-------S-SS-------------S-------------------------------S--------
-SSSSSSSSSSSSSSSSSSSSSS
>forward_119
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-------------------TCAACCTCACGAACCACGAG-----------------------------------------
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>reverse_2155
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--------------------------------------------------------------------------ATTTGC
TGACGGAGGGACAG------------------------------------------------------------------
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