>input_sequence_65728
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--------------------ATGCCTGGGCCTCC------TTCCACCATGTCCCTGCCGAGGCCGAGCAGGTGCTACCGC
TGCTGCTCGTCGTCGACGCCGCC---------------GCCGCCGAAGCAGCGAGCCGCGGAGAGCAAGCGGCGGCCTAT
CCGTAACCCATCGTCGCCACC--TCCATTCATCCGCTCGT-CTTGCCGCGCTAATAACTAACTCCTCGCGTGCCGCGCGC
AACAGTGCAGGCGGAGCGCGGCTGCTGCTGACCCGGAGGGCGCTGGCGGGCGCTGTGGCGACGGTGACGTTGGCGGTGGC
GGGCCGTGCCAGGGCGGCGGAGGAG---GGC---------------GGCGAGGGGGTGGTGGGCGCGTTCAAGTCGCTGT
TCGACCCGAACGAGGAGACCAAGGCCGGGAAGGTGCTGCCCAAGGCGTACCTGAAGGCGGCGCGGGAGGTGGTGCGGACG
CTCCGGGAGTCGCTGGGGGAGGGCGACGCCGCCGGCGACTCGGCCAGCTTCCGCAGGGGCGCCGACTCCGCCAAGACGTC
CATCCGAGAGTTCCTCGGCGGCTGGAGAGGCCAGCCCGCCGTCGCCAAAGAGGTACAGCCAG----CCAGCAGCAGCTCC
ATTCCCTTTCTCTCAAGCCAATGCTATGAATGTTGTTGCTCAGCTACTACCAA-GTTTGTCAGGAAATTCA---------
-----------------------ATCTTGCAAACTATCCCCCTTTTTTTGAAGAAAAAGAGTCGAAGGATGTTGAGAGTG
TTTATTTAGGGCGATTA--AACCATCTGTGAATTCACTTGCC----GCCCTAATATTGGATTGGATGCAATGCAGGAGTC
GTATGTGGCGCTGGAGAAGGCCATCAAATCGCTGGCGGAGTTCTACTCCAAGGCAGGGCCCTTCGCCTCGCTTCCGGGAG
ATGTCAAAAACAAGATCCTCGACGACCTCAACGCCGCAGAGGCCTACCTCTAG---------------------------
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>chr5A_1_TraesCS5A01G386400
TTGAAAAGATCCAAAATGTAGACACACCAATGCAGGCAAACGAAGACCGAATCCAAGTGGACCTATCGAAGACAAACGCC
GGTCTAATCCCGCGAGATTCGCTAGAGACACGTCTTACACACTAGAAACATGATCCGGGCATGGGCTAGGCAGGAAGAAT
CCTATCCCGTCTTCAGGGAACCCCCACCGCCTTGCCTTTCTGAGCGGGACATAAATCCTAACAAAACTAAAAAAAAAGCA
CCCAAAAATGAAGTCCTACTGTCAGGAAGGACGAGCCGGAATCCACCGCGCCTCCATAGCCTTAAGGCCAGAGAAGATGA
GGCAGACCAACGATAACACCGACACGAGGCAGGGAAACCCTATCGCTTGAGCGCTCTTGGTCATGAGCCAAGGGGCACGG
GAGGACGTAGCCAAGCTTAATTTCAGTAGGGGCAACAAATAAGAGAAAATTATGAAGAGAAAAGGAAAAAATAGAAAATA
TCAAGAAGAAATAATAATAATGTCGAATAAATTTTTGATGATTTTCGTGCGGAAATTATTTATTTTATCTTTTTTTGAAA
GAATTATTTATTTTATCTCAAAACATTCAACTTTTTTGTTCTTCTCAAATTTGAGAATGAAGCCGGGAGACACTTATTTC
TCGCGCCGCTGTCTGCTTCGTCATTACAATTAACATCAATCTGAAACCAAAACTGCACGCCTTGATGCATAAATCTAGTG
TATGCCTCTTCTCCCGTCAAGACGAGTGCACATGGATGTTTTTCAGAGAGAGGTCGGGTTTTTTTTTTTTTTTGAGAGGC
CGGGTGAGAGCCCATGCGTTGTTATCGGGCCAGGGGCCTATCACACATTCTGGC---------GTGAGCCCATGTCCGCC
TCACTCTCTCTCTC------TCTCTCGTCCTCCCAACGCGTCAGTAGAGCAGAGCAGTCTT-------------------
----------------------GCAGATAAGGAA----AGCTCTGGTTCTGCGCACAAGCTCCAACCAAATTCCGACTCC
TCTGCGCAGACCAATCACCAATGCCTGGGCCTCC------TTCCACCATGTCCCTGCCGAGGCCGAGCAGGTGCTACCGC
TGCTGCTCGTCGTCGACGCCGCC---------------GCCGCCGAAGCAGCGAGCCGCGGAGAGCAAGCGGCGGCCTAT
CCGTAACCCATCGTCGCCACC--TCCATTCATCCGCTCGT-CTTGCCGCGCTAATAACTAACTCCTCGCGTGCCGCGCGC
AACAGTGCAGGCGGAGCGCGGCTGCTGCTGACCCGGAGGGCGCTGGCGGGCGCTGTGGCGACGGTGACGTTGGCGGTGGC
GGGCCGTGCCAGGGCGGCGGAGGAG---GGC---------------GGCGAGGGGGTGGTGGGCGCGTTCAAGTCGCTGT
TCGACCCGAACGAGGAGACCAAGGCCGGGAAGGTGCTGCCCAAGGCGTACCTGAAGGCGGCGCGGGAGGTGGTGCGGACG
CTCCGGGAGTCGCTGGGGGAGGGCGACGCCGCCGGCGACTCGGCCAGCTTCCGCAGGGGCGCCGACTCCGCCAAGACGTC
CATCCGAGAGTTCCTCGGCGGCTGGAGAGGCCAGCCCGCCGTCGCCAAAGAGGTACAGCCAG----CCAGCAGCAGCTCC
ATTCCCTTTCTCTCAAGCCAATGCTATGAATGTTGTTGCTCAGCTACTACCAA-GTTTGTCAGGAAATTCA---------
-----------------------ATCTTGCAAACTATCCCCCTTTTTTTGAAGAAAAAGAGTCGAAGGATGTTGAGAGTG
TTTATTTAGGGCGATTA--AACCATCTGTGAATTCACTTGCC----GCCCTAATATTGGATTGGATGCAATGCAGGAGTC
GTATGTGGCGCTGGAGAAGGCCATCAAATCGCTGGCGGAGTTCTACTCCAAGGCAGGGCCCTTCGCCTCGCTTCCGGGAG
ATGTCAAAAACAAGATCCTCGACGACCTCAACGCCGCAGAGGCCTACCTCTAGGTCTC--TTTGCTTAGCGGCATTGTAT
TTTCCGGCGTAAATTCGTTATACTT------GTGTCCTTTTGTTGCGACGTTATGATGAGTAAATAATAATTGACATGGA
TCCCCATTTCTCTC-TTGATTCAACGGAGGCGAATATGGGCACCAGGGTAGTAGATGCATTGGAGAGGTGCTGGATCTTC
AGTTCTATTCTAAG------------------------------------------------------------------
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----------------------------TTTCCCACACGACCAAAATGAGCAAGAGGCAAAGGCCTTC-------CGGTG
GAGGAAGCCGGCGGGCCGGCAACCACAATGCAGAAGCACACATGGAACCCTGATTGATGCTTGCCAGCAGGCCCCATCCC
C-ATGAATTCCTCCACAGTTAAAACATCCTAAAATTTCAGGTTTGAAATTACTCGCAGCA----GCATGGCAAAGCTTTT
TCGCCCATACAACTAGCATCATACAGACAATGAGGTTCCTTCTTCTGGTTGCAAAAGTGCAAAGCTATTGACAGAAAC--
-AACAACTAACATCCACTATGAT-----TCGCGGCAACGTTGGCCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------------
---------TACCTGCTGAGGAGTCCACATACAGTTAGGTATGGTCGGGGTCAACAACTTTTAATACTGCACACTGCACA
GGCTGGTCACCAAGC-------CCTGGCCAAAACAGCGCTCGTCTTCAAAAACGCATCCTTTCAGGTTTGCTTTCTGGAA
GAAGCA
>chr5B_794
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-------------------------------------------------------------------------GAGAGGT
CGGGTGAGAGCCCATGCGTTGTTATCGGGCCAGGGGGCTATCACACATTCTGCCGTGAGCGCGGTGAGCCCATGTCCGAC
TCACTCTCTCTCTC------TCTCGTCCT---CCAACGCGTCAGTAGAGCAGAGCAGTCTTTGCCTCCCTCAAAAACAAA
AACAAAAAAGCAGAGCAGTCTTGCAGATAAGGAAGGAAAGCTCTGGTTCTGCGTAC-AGCTCCAACCAAATTCCGACCCC
TCTGCGCAGACCAATCACCAATGCCTGGGCCTCC------TTCCACCACGTCGCTGCCGAGGCCGAGCAGGTGCTACCGC
TGCCGCTCGTCGTCATCGCCGCCACCGCCGCCGCCGCCGCCGCAGAAGCAGCGAGGCGCGGAGAGCAAGCGGCGGCCTAT
CCGTAACCCATCGTCGCCACC--TCTACTCATCCGCTCGTTCTTGCCGCGCCG---ACTAACTCCTCGCGTGCCGCGCGC
AACAGTGCAGGCGGAGCGCGGCTGCTGCTGACCCGGAGGGCGCTGGCGACGGTCG------------CGGTGGCGGTGGC
GGGCCGCGCTAGAGCGGCGGAGAAGGACGGCGACGGCGGGGATGGTGGCGAGGGGGTGGTGGGCGCGTTCAAGTCGCTGT
TCGACCCGAACGAGGAGACCAAGGCCGGGAAGGTGCTGCCCAAGGCGTACCTGAAGGCGGCGCGGGAGGTGGTGCGGACG
CTCCGGGAGTCGCTGGGGGAGGGGGACGCCGCCGGCGACTCGGCCAGCTTCCGCAGGGGCGCCGACTCCGCCAAGACGTC
CATCCGGGAGTTCATCGGCGGCTGGAGAGGCCAGCCCGCCGTCGCCAAAGAGGTACAGCTAGCTACCCAGCAGCAGCTCC
ATTCCCTTTCTGTCAAGCCAATGCTCTGAATGCTGTTGCTCAACTAGTACCAAAGTTTGTCAGGAAATTCAGTTTTACAT
GAATGAACTGCATGCTCTTAATAATCTTCCAAACTAGCCAGACG--TTTGAAGAAAAAGA--------------------
TTTATTTGGGGTGATTA--AACCATCTATGACTTCACTCACCTGCGGCCCTAATATTGGATTGGATGCAATGCAGGAGTC
GTATGTGGCGCTGGAGAAGGCCATCAAATCGCTGGCGGAGTTCTACTCCAAGGCAGGGCCCTTCGCCTCGCTACCGGGAG
ATGTCAAGAACAAGATCCTGGACGACCTTAACGCCGCAGAAGCTTACCTCTAGATCTC--CTTGCCTAGCGGCATTGTAT
TTCGGGCGTAAATTTCGTTATACTTGTGGACGTGTCCTTTTGATGCGACGTCATGA-GTAAATAAATATTTGCATTTTAT
TCAGTTTTGC----------------------------------------------------------------------
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-------------------------CAATGCAGAAGCACAGATGTAACCCTGATTGATGCTCGCCAGCAGGCCCCATCCC
CTATGAGTTCCTCCACAGTTAAAACATCCTAAAATTTCAGGTTTGAAATTACTCGCAGCAGCATGCATGGCAAAGCTTTT
TCGCCCATACAACGAGCATCTTACAGGCAATGAGGTT--------------CAAAGGTGCAAAGCTATTGACAGAAAC--
-AACAACTAACATCCACTATGATATGATTGGCGGCGCCATTGGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATAAAACTATCA
TCCCCGTTCTACCTGCTGAGGATTCCACATACAGTTAGGTATGGTCGGGGTCAACAACTTTTAATACTGCACACTGCACA
GGCTGTCCTGTCCGAATCCAATCCTGGCCAAAACAGCACTAGTCTTCAAAAACGCATCCTTTCAGGTTTGCTTTCTGGAA
GAAGCA
>chr5D_842
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-----------------------------------------CACACATTCTGCT---------GCGAGCCCATGTCCGAC
TCGCTCTCTCTCTCTCTCTGTCTCGTCCT---CCAACGCGTCAGTAGAGCAGAGCAGTCTT-------------------
----------------------GCAGATAAGGAAGGAAGGCTCTGGTCCTGCGCAC-AGCTCCAACCAAATTCCGACTCC
TCTGCGCAGACCAATCACCAATGCCTGGGCCTCCACTGCCTTCCACCATGTCCCTGCCGAGGCCGAGCAGGTGCTACCGC
TGCCGCTCGTCGTCATCG------CCGCCGCCGCCGCCGCCGCCGAAGCAGCGAGCCGCGGAGAGCAAGCGGCGGCCTAT
CCGTAACCCATCGTCGCCACCCCTCCATTCATCCGCTCGTTCTTGCCGCGCCG---ACTAACTCCTCGCGTGCCGCGCGC
AACAGTGCAGGCGGAGCGCGGCTGCTGCTGACTCGGAGGGCGCTGGCGGGCGCCAT------GGTGACGGTGGCGGCGGC
GGGGCGCGCCAGGGCGGCGGAGGAGGACGGC---------------GGCGAGGGGGTGGTGGGCGCCTTCAAGTCGCTGT
TCGACCCGAACGAGGAGACCAAGGGCGGGAAGGTGCTGCCCAAGGCGTACCTGAAGGCGGCGCGGGAGGTGGTGCGGACG
CTCCGGGAGTCGCTGGGGGAGGGGGACGCCGCCGGCGACTCGGCGAGCTTCCGCAGGGGCGCCGACTCCGCCAAGACGTC
CATCCGGGAGTTCATCGGCGGCTGGAGAGGCCAGCCCGCCGTCGCCAGAGAGGTACAGCCAG----CCAGCAGCAACTCC
ATTCCCTTTCTCTTAAGCCAATGCTCTGAATGCTGTTGCTCAACTAGTACCAA-GTTTGTCAGGAAATTCAGTTTTACAT
GAATCAACTGCACGCTCTT-ATAATCTTCCAAACTAGCTAGCCC--TTTGAAGAAAAAGA--------------------
TTTATTTAGCGTGATTATAAACCATCTATGAATTCACTCACCTGCCGCTCTAATATTGGATTGGACGCAATGCAGGAGTC
GTATGTGGCGCTGGAGAAGGCCATCAAATCGCTGGCGGAGTTCTACTCCAAGGCAGGGCCCTTCGCCTCGCTTCCGGGAG
ATGTCAAGAACAAGATCCTCGACGACCTCAACGCCGCAGAGGCCTACCTCTAGATCTCTCTTTGCTTAGCACCATTGTAT
TTCCGGCGTAAC-TTCGTTATACTT------GTGTCCTTTTGTTGCGACGTTATGA-GAGTAAATTAAAATTGAAATGGA
TCCCCATTTCTCTCTTTGATTCAACGGAGGCGAATATGGGCATCAGGGTAGCAGAGACACTGGAGAGGTGCTGGGTGCTA
GGTTTTTTTTTTTCGAGGGTACGCCAAAGGCGTACCTTAGCTTTATAGAAGAGAGAAAAATATGTACAAGAGATTACAAA
GCGCTAGCTAAGAGCCACAAACCGACCCTACCAAACCTCCACTCCACTCCTCACGCTACTCTACTACTCAGGTACATGTT
GTGCTCCAAACGCTCCTGTCGTGGCCCAAGTCCTTAAGTCGTCGAAGATCGTGTCCACCGTATCCCACTCGTTCCTGATC
TGGCCCGATCCGAACACTCTCGCGTTCCTCTGCTTCCATAATGTCCAGCAGATGAGCATTACAAACGTGTCGAATCCTTT
CCGAGTTTGCTTGTGTATTCGCTTTCTGGCATCTGACCACCATTGCACCAACCTGGAGTCGTTTGCTGGGCAAAGCTCCA
TCCTCAATCCCATCCTAGCAATGCAACTAGACCACACTTGCCGCGAGAACACACACTGCTGCAAAATGTGGTCGATCGTG
TCTTCCTCCTGGGCACATAGGTAGCATTGAGATGTTTGGTCTTGTAACCCATGTCTAGTCCTTCTATCCGACGTCCATAA
TCGATATTGCACTGCCAGCCACATGAAGATCTTACACGCAAGAGGTGCCCAGCATTTCCAGATGGCACCGAAGGAGTGGA
AACGGACTCCTCCCTCACAAAGCATCTTATAGGCTGAAGATGCAGAATATACTCCGGCCACATTCCACATCCAAATGGGG
CTGTCCTCAGTTTGAGCGTCAAGTTGCACCTCCGAAATGATCTCCCAAAGCCCGATGAACTGGGTTAGGCCCTCCGTGCA
TAAGTTACCCACCACATCGTTCATCCATGCGTGCATGAACATAGCATCACGCACCAACCTCCTGTTGGCCACTTGGGTAC
GGACAGTCGCCACGACCAGAGGGGCAATATCCTTGATGGTTGCGCCATGGAGCCACCGATCTTTCCAAAACAGAATTTTG
TCTCCCGCTCCCACCTTCCATTTAACCAGGCTCCCGAAAGTTTGATCTACCATTTTATCCGCGGTTAAGTTGAGACCCTG
CCAAGGCCTGGATGCATCCGTACGTCGAAGCCATTCCCATCTTAATCTTAGGGCAATGCCATGCTTAAAGAGGTCAATGA
CGCCCAATCCTCCCATGTGCTTTGGCCTACATACTCTCGCCCAAGATACCACACATTTACCGCCATGCACTTCGTCCGTC
CCGGCCCAGAAGAAGGCCCTACATCCTCTGTCCACTCTTTCTAGAGCCCATTTAGGCACCTCCACAATCATGAGATGATG
AGTGGCCCGCGCTCTCATGACTTGGTTGACAAGGATAAGCCTTCCCGATCTAGTCACCAAGCCTCTTTGCCATCCGGGCA
GGATGCTGGGTGCTAGGTTCATTCTAAATTTCCCAGATGACCAAAATGAGCAAGAGTCAAAGGCCTTCTTATTGCCGGTG
GAGGAAGCCCCGGCGCCGGCAGCCAAAGAGGGGCTTATCTACTACCAG--------------------------------
---------------CAGTTAAAACATCCTAGAATTTCAGATTTGAAATTACTCGCAGCAGCATGCATGGCAAAGCTTTT
TCGCCCATACAACTAGCATCTTACAGACAATGAGGTTCCTTCTTCTGGTTGCAAAAGTGCAAAGCTATTGACAGAATAAG
TAACAACTAACATCCACTATGATATGATTCACGGCGCCATTGGCCTTCGACTTTTAAGTTAACCCCCCCCCCCCAAAATA
CACAG---------------------------------------------------------------------------
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-------------------------------------------------------------------AATAAAACTATCA
TCCCCGTTCTACCTGCTGAGGATTCCACATACAGTTAGGTATGGTCGGGGTCAACAACTTTTAATACTGCACACTACACA
GGCTGTCCTGTCCCAATCGAATCCTGGCCAAAACAGCACTAGTCTTCAAAAACGCATCCTTTCAGGTTTGCTTTCTGGAA
GAAGCA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S
------------------------------------S---------------S-------------------------S-
------------------------SSSSSSSS------------------------------------------------
--------------------------------------------------------S-----------------------
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---S----------SS----------------------------------------------------------------
---------------------------------------------------SSSSS------------------------
-----------------------------------------------------S--SSSSSS-------S----------
------S-------------------------------------------------------------------------
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-----------------------S--------------------------------------------------------
------S------S------------------------------------------------------------------
-------------------------S------S---------S---S---------------------------------
----------------------------S-------S--SS-SSSS--------------SSSSSSSSSSSSSSSSSSSS
-----------S---------------S----------SS----------------------------------------
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-------S---------------------------------------------S--------------------------
--S-S-SSSS--S-------------------------------------------S----------S------S-----
------------------------------------------S--------S---SS--S--------------S-SS-S
S---S-S--S-SSS------------------------------------------------------------------
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-----------------------------------S-S------------------S-----------------------
---------SSS-S-------S------------------S---S----------------S------------------
------S-------------------------------------------------------------------------
--------------------S-----------------------------------------------------------
-----------------------------------SS-S-----------------------------------------
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----------------------S---------------------------------------------------------
-----SS-SSSSS-S----------------------S--S---------------------------------------
------
>forward_44
------------------------CACCAATGCAGGCAAACGAA------------------------------------
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>reverse_1255
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------------------------------------------------------TAACTAACTCCTCGCGTGCC------
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>forward_702
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------------------------------------------GAAACCAAAACTGCACGCCT------------------
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>reverse_2217
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--------------------------------------------------------GCATTGGAGAGGTGCTGGAT----
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