>input_sequence_65704
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----------------------------------------ATGGCGCCCAGCGGAGACA---CCGTGGCCAACGTCCACA
GCGGCACCGACAGCACCAACAAGACGCTGCTCAAGAGCGACGCCCTGTACACCTACATCCTCGACACCACGGTGTTCCCC
CGCGAGCACGAGTGCATGCGCGACCTGCGCCTTATCACAGACAGGCACCCCAAGTACGTATCATCTTCT-TCTTTCTTTT
TTTGCCGGTGGGGCTCGTATCATCTTCTCTGCACGCACGCACGCACGCACGTCGATCTCCATGGATCGGTGTTAGT--TA
GTTTGTTTGTTTGCTCGTCGATCGATCTGGCTCTGATCGGGCCGGGCTGGTCCTTGGGACTCAGGGGTTTCATGCAGTCG
TCTTCCGATGAGGCGCAGCTACTAGGGATGCTGGTCAAGATGGCGGGGGCCAAGAAGACGATCGAGGTGGGCGTGTTCAC
GGGGTACTCTCTGCTGGCCACGGCGCTGGCGCTCCCGGAGGACGGCAAGGTGTTGGCCATCGACACCGACCGGGACTGCT
ACGAGGTGGGACGCCCCTTCATCGAGAAGGCCGACGTGGCGCACAAGGTGGACTTCCGCCAGGGCACCGGCCTGGAGCGC
TTGGACGAGCTCCTCGCCGAGGAGGACGGCGCCGCGAGCTACGACTTCGCTTTCGTGGACGCGGACAAGCCCAACTACGT
GCGCTACCACGAGCAGCTGCTGCGCCTGGTGCGCATCGGCGGGACCATCATCTACGACAACACGCTGTGGGGCGGCACGG
TGGCCCTGCCGGCAAGCACGCCCATGTCCGACCTCGATACCCGCTTCTCTGCCGCCCTCAGGGACTTCAACGCCAAGCTC
GCCGCCGACCCGCGTATCGAGGTCTGCCAGCTCGCCATCGCCGACGGCGTCACCATCTGCCGCCGCCTCATCTAG-----
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>chr4A_1_TraesCS4A01G442400
GCGACCGCCGCGGCGGCGCCTCGTCCTGCTCGTCACCGGAGGAGATGCCGATCTCCTCCTCGGAGGAGGAGCCTGCCGCC
ATGGAAGCTGACGGCCCGGAGAGCGTGGGCGGCGGCACCAAGAACTGCCGGAGGAGAAGCTTCCACCTACTCCGCATGTC
GGCGTGGAGTACGACGACTTCGGCATCACCGGAGCTTGGTTGGAAGAGGGGAAAGGGAGGGGCTTTGGCATGGAGACAGG
GAAGGGGAGGGGGCCAGTGCTCGGGAAGGGGGAGTGTGGCTCCATGCATCGCCGACGCAGGGTTTAAATAGCCGGGGCAA
GGCCCAGGCGAAGGGGCGGTCACTTCAGTGCGGCGCAGCGGCAAGAGTTGGTTCCTCGGAAACCTACGTCTGCATTGAAG
CGGAGGCTGCCGAGAGGTCGCATAGGTCAGCGCCCCCCTCCCTTTCACGTTTGTCTCCGGTTTACGGGAGAAATCGCGTC
TGGACCGTCCTGCGGACAGATATAGGACCACGTTGGATGGCTTCCCGGTCCGGACAGCGCCGATCCAAATGGACCCGATG
GATTTACTCCGGTGGAGGGCCACGTTTTATGTCGACCAAGACATGTACTCGGGTGGAGGGCCCGATCGATTTACTCCGGA
CAGATATAGGACCACGTTTTATGTCGACCAAGACATGTACTCGGGCGGAGGGCCCGACCGATTTACTCCCAAGCGGGCAA
GCGGCGGCACGGGGCTTTCTTTTGAGATACAGCGTCCCATGGGCTCGGACGATTGGCGGTGGACATAATACATGGACAGC
AACCCCGCCAAGAGGCCACCACGTGGAACACGTGGTTTGCATTACAACCGATGAAGAAAAACGTGAGAGACGAGCGGATA
AATACAGGCACGTACGTCGAAGCTGTGAGTGGACAGAAACTCGATCAAACTCATCCCTACTACTCCGGCCGCACCACCAA
CCGCGCAAGGCAGCGAGCAGAGTCGGAGATGGACCGAGCCATGGCGCCCAGCGGAGACA---CCGTGGCCAACGTCCACA
GCGGCACCGACAGCACCAACAAGACGCTGCTCAAGAGCGACGCCCTGTACACCTACATCCTCGACACCACGGTGTTCCCC
CGCGAGCACGAGTGCATGCGCGACCTGCGCCTTATCACAGACAGGCACCCCAAGTACGTATCATCTTCT-TCTTTCTTTT
TTTGCCGGTGGGGCTCGTATCATCTTCTCTGCACGCACGCACGCACGCACGTCGATCTCCATGGATCGGTGTTAGT--TA
GTTTGTTTGTTTGCTCGTCGATCGATCTGGCTCTGATCGGGCCGGGCTGGTCCTTGGGACTCAGGGGTTTCATGCAGTCG
TCTTCCGATGAGGCGCAGCTACTAGGGATGCTGGTCAAGATGGCGGGGGCCAAGAAGACGATCGAGGTGGGCGTGTTCAC
GGGGTACTCTCTGCTGGCCACGGCGCTGGCGCTCCCGGAGGACGGCAAGGTGTTGGCCATCGACACCGACCGGGACTGCT
ACGAGGTGGGACGCCCCTTCATCGAGAAGGCCGACGTGGCGCACAAGGTGGACTTCCGCCAGGGCACCGGCCTGGAGCGC
TTGGACGAGCTCCTCGCCGAGGAGGACGGCGCCGCGAGCTACGACTTCGCTTTCGTGGACGCGGACAAGCCCAACTACGT
GCGCTACCACGAGCAGCTGCTGCGCCTGGTGCGCATCGGCGGGACCATCATCTACGACAACACGCTGTGGGGCGGCACGG
TGGCCCTGCCGGCAAGCACGCCCATGTCCGACCTCGATACCCGCTTCTCTGCCGCCCTCAGGGACTTCAACGCCAAGCTC
GCCGCCGACCCGCGTATCGAGGTCTGCCAGCTCGCCATCGCCGACGGCGTCACCATCTGCCGCCGCCTCATCTAGACGGA
CGTTCGTTCGTT-CGGTCCGGTGTGATCTGCGTGCGTCAATTTCCCTACCGCCGGCCGCTTTAGTAAATTTGTGTTTTTC
CCCGGCCCTGTCCGCGCTGGCTGCTGAAGCATCTGATGAGTGGTTGTACTTATCTACTCTAGTGTTGCGATATGCAATGA
CGAGCTCGTGCATGCGGATGTAATTGTTACATTTATCTCAGTTGGATTGTTACATGTGAGATGGTGATTTATCTCAATTG
GATTGTTACACGTGAGATGGTGAGACACGCGCGATGTGGATGTGCTATAAGGCCATCTCCAACACTCACCCTCAAATTTC
CTCTGCCATCCGTTGCCGAAAGGCAGACCAGTCCCCAGAGACGGAAAGAATGCCGGAGACGGCCATCTAACGCTACCTGC
ATACATTTCAAATCACGTTTAAAATAACCGGATAAAATTCATCAAACACGACAGATTTCATAAATGTTCGGACGTAATTT
ACATAAAACGTCGATATTTCGTCCATTTTACTAAAAACTAGAAAAATAAACCTAAACCCTATACCGGACGGCCACTTCGT
GCGCGTGGCGGCCCTGCCCTGCCGCACCGATGTCACAGTTGGTGCCATCATCGTCGTCGACGACGTGGTCCCTCCAGCGG
CAGAAGGGCGCCGGAGGGCCGTGGCAGCCCTTGTCTAGCGGTTGCCTACCGCTCTTGGAGGAGCCGCTCCGCATCCTGCT
GCGCGGAGAGGAGGGCCGCCACGGCCTCTTCCAAATGTGCCAGCGGAGCCTTGGCGACGGCCTTACCCCTGCTGGCGTTG
GTGGAGTTGTCGCTAAGAAGTAGAAGGCACTCAATGATTACTTTTAAATTGATATTGAACTAATTAGTATGTGATTCATT
TTTTTGCGAAAAAGACCATAGATCTATTAATTAGTACACAGCATTACAGAGCACCCCTCAGTAAAAGAAGAAATTACAAT
GTTTTCCATGGGGAACTGGCCATCGGCTTCCACCCG
>chr7B_996
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-----------------------------------GAGCCATGGCGCCCAGCGGAGACAACACCGTGGCCAACGTCCACA
GCGGCATCGACAGCACCAACAAGACGCTGCTCAAGAGCGACGCCCTCTACACCTACATCCTCGACACCACCGTGTTCCCC
CGCGAGCACGAGTGCATGCGCGACCTGCGCCTCATCACGGACAAGCACCCATGGTACGTCCGC----CA-TCTTCTTCTT
C-----------------------------------ACGA-----------TCCATGTCGATCGATCGTAGTTACTACTC
GTTATTGTGGTTGCT----GATCGATCTGGCTCTC--------------GTTCATTGGATTCAGGGGCTACATGCAGTCG
TCCTCGGACGAGGCGCAGCTGCTGGGGATGCTGATCAAGATGGCGGGCGCCAAGAAGACGATCGAGGTGGGCGTGTTCAC
GGGCTACTCGCTGCTGGCCACCGCGCTGGCGCTCCCGGAGGACGGCAAGGTGGTGGCCATCGACACCGACCGCGAGTGCT
ACGAGGTGGGCCGCCCCTTCATCGAGAAGGCCGGCATGGCGCACAAGGTGGACTTCCGCGAGGGCACCGGCCTGGAGCGC
CTGGACGAGCTCCTCGTCGAGGACGACGGCGCGGCGAGCTACGACTTCGCGTTCGTGGACGCGGACAAGCCCAACTACGT
GCGCTACCACGAGCAGCTGCTGAAGCTGGTCCGCGTCGGCGGCACCATCATCTACGACAACACGCTGTGGGGCGGCACGG
TGGCCCTGCCGGCGGGCACGCCCATGTCCGACCTCGACACCCGCTTCTCCGCCGCCCTCAGGGACCTCAACGCCAAGCTC
GCCGCCGACCCGCGCATCGAGGTCTGCCAGCTCGCCATCGCCGACGGCGTCACCATCTGCCGCCGCATCGTCTAGACGGG
CGTCCG--------------------------------------------------------------------------
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>chr7A_996
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-----------------------------------GAGCCATGGCGCCCAACGGAGACAACACCGTGGCCAACGTCCACA
GCGGCATCGACAGCACCAACAAGACGCTGCTCAAGAGCGACGCCCTCTACACCTACATCCTCGACACCACCGTCTTCCCC
CGTGAGCACGAGTGCATGCGCGACCTGCGCCTCATCACCGACAAGCACCCATGGTACGTATCATCATCA-TCTTCTTCTT
C-------------------------CTCTGCATGCACGCTCGCACG----------TCGATGGATCGTTGTTACTACTC
GTTATTGTGGTTGCT----GATCGATCTGGCTCTGA--------------TTCTTCGGATCCAGGGGCTACATGCAGTCG
TCGTCGGACGAGGCGCAGCTGCTGGGGATGCTGATCAAGATGGCGGGCGCCAAGAAGACGATCGAGGTGGGCGTGTTCAC
GGGCTACTCGCTGCTGGCCACCGCGCTGGCGCTCCCGGAGGACGGCAAGGTGGTGGCCATCGACACCGACCGCGAGTGCT
ACGAGGTGGGCCGCCCCTTCATCGAGAAGGCCGGCATGGCGCACAAGGTGGACTTCCGCGAGGGCACCGGCCTGGCGCGC
CTGGACGAGCTGCTCGTCGAGGACGAGGGCGCGGCCAGCTACGACTTCGCGTTCGTGGACGCGGACAAGCCCAACTACGT
GCGCTACCACGAGCAGCTGCTGAAGCTGGTCCGCGTCGGCGGCACCATCATCTACGACAACACGCTGTGGGGCGGCACGG
TGGCGCTGCCGGCGGGCACGCCCATGTCCGACCTCGACACCCGCTTCTCCGCCGCCCTCAGGGACCTCAACGCCAAGCTC
GCCGCCGACCCGCGCATCGAGGTCTGCCAGCTCGCCATCGCCGACGGCGTCACCATCTGCCGCCGCCTCGTCTAGGCGGG
CG------------------------------------------------------------------------------
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>chr7D_996
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-----------------------------------GAGCCATGGCGCCCAACGGAGACAACACCGTGGCCAACGTCCACA
GCGGCATCGACAGCACCAACAAGACGCTGCTCAAGAGCGACGCCCTCTACACTTACATCCTCGACACCACCGTGTTCCCC
CGCGAGCACGAGTGCATGCGCGACCTGCGCCTCATCACCGACAAGCACCCATGGTACGTCCGC----CCGTCTTCTTCTT
C-------------------------CTCTGCATGCACGA-----------TCCATCTCGATCGATCGTTGTTACTACTC
GTTATTGCGGTTGCT----GATCGATCTGGCTCTGA--------------TTCTTTGAATCCAGGGGTTACATGCAGTCG
TCCTCGGACGAGGCGCAGCTGCTGGGGATGCTGATCAAGATGGCGGGCGCCAAGAAGACGATCGAGGTGGGCGTGTTCAC
GGGCTACTCGCTGCTGGCCACCGCGCTGGCGCTCCCGGAGGACGGCAAGGTGGTGGCCATCGACACCGACCGCGAGTGCT
ACGAGGTGGGTCGCCCCTTCATCGAGAAGGCCGGCATGGCGCACAAGGTGGACTTCCGCGAGGGCACCGGCCTGGCGCGC
CTGGACGAGCTCCTCGTCGAGGACGACGGCGCGGCGAGCTACGACTTCGCGTTCGTGGACGCGGACAAGCCCAACTACGT
GCGCTACCACGAGCAGCTGCTGAAGCTGGTCCGCGTCGGCGGCACTATCATCTACGACAACACGCTCTGGGGCGGCACGG
TGGCGCTGCCGGCGGGCACCCCCATGTCCGACCTCGACACCCGCTTCTCCGCCGCCCTCAGGGACCTCAACGCCAAGCTC
GCCGCCGACCCGCGCATCGAGGTCTGCCAGCTCGCCATCGCCGACGGAGTCACCATCTGCCGCCGCATCGTCTAGGCGGG
CGGGCGTCCGGCCCGGCCCGGCGTGATC----------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------------------
------S---------------------------------------S-----------------------S---------
--------------------------------S-----S----S------SSS------------S--S-----SS-S--
SSSSSSSSSSSSSSSSSSSSSSSSSS-------S------S------SSSS--S-----S--------S-----S----S
---SS-S--S-----SSSS-----------------SSSSSSSSSSSSS--S---S---S---------S----------
--S--S--S-----------S--S---------S-------------S--------------------------------
---S-----S-----------S------------------------------S-------------------S--S----
----------S----------------------S-S-----------------------S--------------------
S---------------S------S--------S-----------------S-----------------------------
----------------------SSS-----S---S-------S-------------------------------------
-------------SS----------------------S-----------S---------------S--------------
--------------S------------------------------------------------------S---------S
---S---S--SS----S----S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_431
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-----------GAGAGGTCGCATAGGTCAGC-------------------------------------------------
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>reverse_1332
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---------------------------------------------------CCTTGGGACTCAGGGGTTTC---------
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>forward_915
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---------------GTCGAAGCTGTGAGTGGACA---------------------------------------------
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>reverse_2459
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----------------------------------------------------------CTATACCGGACGGCCACTTC--
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