>input_sequence_65697
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------------------------------------------------------ATGTCGTTGAACGACATGGGGCGCCG
CCTGGCCCTGGTCATCGTCTGCTGCATCCTCCTCTCGTCGCTCCGCACGGCGGCCGCGACGGGAAAGACCGGCCGGATCA
CGGTGTACTGGG--------GCCAGACCTCCAGCGAGGGGTCGCTACGCGAGGCCTGCGAGAGCAACCTCTACTCCACCG
TCATCCTCTCCTTCCTCACCAACTTCGGCCGCGGCAAGTACGAGCTCAACCTCGCCGGCCACCCCTGGAAGGCCGTCGGG
CCCCACGTCAAGTACTGCCAGTCCAAGAAGATCCTCGTCCTCCTCGCCATCGGCGGCGGCATCGGCAAGTACTCCCTCGC
CTCAAGGGCCGACGCCAAGAAGGTGGCGGAGCACCTCTGGAACTACTACCTCGGCGGGAAGTCCCGCGACCGGCCGTTCG
GCAACGCCGTGCTGGACGGCATCGACTTCGACATCGAGCTCGGGAGCCGCGCCCACTACGACGACCTCGCCAGGCACCTC
AAGGCCTACGGCGACAGGAAGGGCGCGAAGAAGGTGTTCGTCACGGCGGCGCCGCAGTGCCCGTTCCCGGACAGGATGCT
GGGGGAGGCGCTCCGGACGGGGCTCTTCGACCGCGTGCACGTCCAGTTCTACAACAACCCCGTGTGCAGCTACAGGGCCG
GCAACGTGGCCGCCTTCAAGAAGGCGTGGAAGGACTGGACCAAGAGCCTGCCCAACAGCTCCGTCTACCTCGGCCTGCCG
GCGGCGCGAGGGGCGTCCAACAAGGGCAGTGGCTACGTGGATCCGGGGACGCTGGTGTCCAAGGTGCTGCCCATCGTGCA
GCGCTCCAACAACTACGGAGGCATCATGCTCTGGAGCAGGTACTTTGACGTCAAGTCCGGATACAGTAGGCGCGTCAAGA
AATTCGTCTGA---------------------------------------------------------------------
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>chr2D_1_TraesCS2D01G450600
AGTTGCTACTGAATGGTTTGTAAAATCATTGACCGGATTAAAATCGTAAACCAAATCCAAAATTGAATACCTTAATTGAA
CTGAAAGTACTTCAAAATAAGGAAACATAGGGAAACTAAAAAAATTGAATGGAAGAGCTCCTTGAGAAATTGTTGACCCG
GTGAAAATTGGGTGACCCAATTCTAAATTGAAAACCTCAGTTACTTGTGATGCCTTAAAAATTAGGAAGTATGGTGTATA
GTATAAAAAAATTGAATGAAAGAGCTTTAAGAAATTGTTGACCCGACCAAAATCGGATGACCCAATTTCAATTAGAGATC
TCAATTGAATGTGGGCTCTTTAAAACTAGGAAGCATAGTGTTATAGACTATATTTTAAAAATAAATCTTATTTGAAAGTC
CTCGTCAAGAGAAACATAAATTAATTTGTACTTTTCTAGATATGAAAATTTAAAAATCGGAAGCAAAGAATAAAAAGCAC
GCGCGAGGGACTCAGTGGGAGGACACGTTCCGTCAACGACGAGGCGTCTACGATGACTTCGTAAATCTCATGATGATATG
TCGTCTCAGTCTTTTGAAGGTGCTCATATAGATAAGATGTATATGTGTGCGTTTATAGAGATGAGTGTATGCGTGTGCGT
CGTACTGGGTTGAAAAAAGCTGCCACCCGCAGCAGAATTCTTACTCTCCTGGCTTGTACGTCGCGTAGTTCTCACATCTA
CAAGCGCCACGTCGCCTTGATACCCGTTGACAAAAAATCTCATTGGATATGCTCGATTGACTAGTGCTTAGTCTATCTTA
TCACATCCTCGTATCGATCACATCCTTAGGAACAGGGGGAAAAGTAACACGT----ATGCTTGCTTCACACGGAGGAAAC
GAACCCCGCTGCTACCTATAAAAGCACCAGCTCCT-GCATAACAATCCATGCACACACACACACCATCACGAGTGCAAGT
AAAAACACAACCACCT---TAGCTAATCCGACCGTGAAGAAGAACAG------CATGTCGTTGAACGACATGGGGCGCCG
CCTGGCCCTGGTCATCGTCTGCTGCATCCTCCTCTCGTCGCTCCGCACGGCGGCCGCGACGGGAAAGACCGGCCGGATCA
CGGTGTACTGGG--------GCCAGACCTCCAGCGAGGGGTCGCTACGCGAGGCCTGCGAGAGCAACCTCTACTCCACCG
TCATCCTCTCCTTCCTCACCAACTTCGGCCGCGGCAAGTACGAGCTCAACCTCGCCGGCCACCCCTGGAAGGCCGTCGGG
CCCCACGTCAAGTACTGCCAGTCCAAGAAGATCCTCGTCCTCCTCGCCATCGGCGGCGGCATCGGCAAGTACTCCCTCGC
CTCAAGGGCCGACGCCAAGAAGGTGGCGGAGCACCTCTGGAACTACTACCTCGGCGGGAAGTCCCGCGACCGGCCGTTCG
GCAACGCCGTGCTGGACGGCATCGACTTCGACATCGAGCTCGGGAGCCGCGCCCACTACGACGACCTCGCCAGGCACCTC
AAGGCCTACGGCGACAGGAAGGGCGCGAAGAAGGTGTTCGTCACGGCGGCGCCGCAGTGCCCGTTCCCGGACAGGATGCT
GGGGGAGGCGCTCCGGACGGGGCTCTTCGACCGCGTGCACGTCCAGTTCTACAACAACCCCGTGTGCAGCTACAGGGCCG
GCAACGTGGCCGCCTTCAAGAAGGCGTGGAAGGACTGGACCAAGAGCCTGCCCAACAGCTCCGTCTACCTCGGCCTGCCG
GCGGCGCGAGGGGCGTCCAACAAGGGCAGTGGCTACGTGGATCCGGGGACGCTGGTGTCCAAGGTGCTGCCCATCGTGCA
GCGCTCCAACAACTACGGAGGCATCATGCTCTGGAGCAGGTACTTTGACGTCAAGTCCGGATACAGTAGGCGCGTCAAGA
AATTCGTCTGAGATGCCTGCATCTGCATGCATCTATC-------AACGATTATACT---------ACTACGGACG--AGT
AGCCCCCTACGTACATGGAGTGCCCTAGCAGTACATATGC--ATGGCACCGTAATAAGTAGTAAGAAATTCGCCGGACCA
TATGTGATCTGATGACCACGTGTACCTTACTATATGCATGTCGGGAAGTTGTTCTCTGAGTGTAATTCCCAAACTA---T
ATATGTATGTGTATGTATGTTGTGCAATAAAGGGGACTTTTAGTTTTATT--GCATCTATTTGTAACTTGGCCGAATTTG
CAATAGGGCTCAGGCCCCGCTTGGTTTCAGGGCCCAAAAACAGCTGTAAAATATACCCCGTGAAAAACAATACAGATGGG
CCTCGCATATGTGATTGGTATGTCGTTTTTGGGCTGTAATATTTAGAATGGTATTCTTGTTTACACCGGTAATAGGCCTG
TAACCGATACAGACCACTATCCGTCATTTTTCGGGAAAAAAAAACAGGCCCCTCCTCTCTCCCGTGGGGCTCCCCCGGGG
TCGCACTGGGGCTCCCAAGTCCAGCCACCCAGGGCCTCCCCAGCCTCCTCATCTCCCCTTATCGCCGCTAGAGGACGTCA
CCGGGCAAAGCCCGGGCGGCGGCGACGGCGGTGGGGCTGTGCCCGTGCGTGGGAT----------AGGCCAGGAGCTTCG
TGCGTGGGCGAGGGCTGGCGAAGGCGACGGTGTGCAGACCTGGGCAGGCTCATGTGGCGTGCTTGCAGCCAGACATGGGC
GGTCTAGGCTGGAAGACGGCGCAGATCCGTTCATCCGGATCCTCCTACAGGCGGGACTGGATCTACAGGATTCGGGCAGG
ACCTTCCTCCTTGTGGCGCAGGAACCAGATTGGGGCCATGGCCAGAAAGGTTCGGCTCCATTGTGGTCAGCTCGGTTCAG
TGCTGATCTGGGTTGGATGCGGTGCTGGCTCTAGTGGTGGCTGCGCGGACGCAAGTCGGTGATGATGATCTGTGTTTCCC
ACTTCA
>chr2A_816
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---------------GATCACATCCTTAGAAAAAGAAGGGAAAGTCGCACGTACGCATGCTTGCTTCAGGCGGAGGAAAC
GAACCCGGCTGCTGCCTATAAAAGAACCAGCTCGTCGCATAACAATCCGTGCAGACAC-------------AGTGCAAGT
AAAAACACAAACACCTAGCTAGCTAATCCGAGGGTGGAGAAGAAGAAGAAGATCATGTCGATGAACGACATGGGGTGCCG
CCTAACCCTGGCCATCGTCTGCTGCATCCTCCTGTCGTCGCTCGGCACGGCAGCCGCGACGGGGAAGACAGGCCGGATCA
CGGTGTACTGGGGCCAGAGTGCCAGACCTCCAGCGAGGGGTCGCTCCGCAAGGCCTGCGAGAGCAAGCTCTACTCCACCG
TCATCCTCTCCTTCCTGACCAACTTCGGCCGCGGCAAGTACAAGCTCGACCTCGCCGGCCACCCCTGGAAGGACGTCGGG
CACGACGTCAAGTACTGCCAGTCGAAGAAAATCCTCGTCCTGCTCGCCATCGGCGGCGGCATTGGAAAGTACTCCCTCGC
CTCCAAGGCCGACGCCAAGGATGTGGCCAACCACCTCTGGGACAACTACCTCGGCGGGAAGTCCCACTCCCGGCCGTTCG
GCGACGCCGTGCTGGACGGCATCGACTTCGACATCGAGCTCGGGAGCAAGGCCTACTACGACGACCTCGCCAGGGACCTC
AAGGCCTACAGCAACAGGAAGGGCGAGAAGAAGGTGTTGATCACGGCAGCGCCGCAGTGCCCGTTCCCGGACAAGAGGCT
GGGGGAGGCGCTCCGGACGGGGCTCTTCGACCGCGTGCATGTCCAGTTCTACAACAACCCGGTGTGCAGCTACAGGGCCG
GCAACGTGGCTGCGTTCAAGGCAGCGTGGGAGGACTGGACCAAGGGCCTGCCCAAGAGCTCGGTCTGCCTCGGGCTGCCG
GCGGAGCGGGAGGCGTCGAACAAGGGCAGCGGGTACGTAGATCCGGACACGCTGGTGTCCAAGGTGCTGCCCATCGTGCA
CCGGTCTAAGAACTACGGAGGGATCGTGCTGTGGAGCAGATACTTTGACATGAAGTCTGGGTATAGTAGGCACGTCAAGA
GCGCCGTCTGA------------TGCCTGCATGCATC-------ATCGATTATACGGAGTACTACACTACGGAAG--AGT
CCCC-------TACGTGGAGTGCCCTTGCAGTACGTATGC--ATGGCACCGTAATAAGAAGA-------TCGTCGGATTA
TATATCATCTGATGAGTACGTATATCTGATTACAT--ATGTCGGGAAGTTGTAGTATGTGTGTAATTCCCAAGTTGGAGT
ATATGTATGTGTATGTATGGTGTGCAATAAAGGCGAATTTTAATTTATCGCGGCAGCTATTTCTAAGTTGATCGCATTTG
CAAATGGGCTCA--------------------------------------------------------------------
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>chr2D_1408
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---------------------------------------------------------------------CCGGCTGTTCG
GCAACGCCGTGCTCGACGGCATCGACTTCGATATCGAGCTCGGGAGCCACGCCTACTACGATGACCTCACCAGGTACCTC
AATGCCTACGACAGCAGGAAGGGCGAGAAGAAGGTGTTCATCATGGTAGCGCCGTTGTGGCCGTTCCCGGACAGGATGCT
GGGGGAGGCGCTCCGGACGGGGCTCTTTGACCGCGTTCACGTCCAGTTCTACAACAACCCTACCTGCAGCAACAGTGCGG
GCAACGTGGCAGCCTTCAAGAAGGCGTACGACA--------------CTGCCCAAGAGCTCCGTCTACCTCGGGCTACCG
GCTGCGCGAGCGGCGTCGAACAAGGGAAGCGGCTACGTGGAACCTGGGAAGCTGGTGTCCAAGGTGCTGCCCATCGTGCA
GCGCTCCAACA---ACGGAGGGATCATGTTGTGGAACAATTACTTTGACATTAAGTCCGGGAACAGTAGGCGCGTCAAGA
AATTCGTCCGA------------TGCCTGCATCTGCATGCATCGATCGATTATACT---------ACTAGGGACGTGAGT
AATCCCCTAGGTACGTGGAGTGCCCTTGCAGTAAGCATGCATATGGCACCGTAATAAGTACAGTAAAAAACTCG------
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>chr4D_2412
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----------------------------------------------------------CTCCCGTGCGGCTCCCACGGGG
TCGCACTGGGGCGCCCAAGTCCGGCTACCCAGGGCCTCCCCAGCCTCCTCGTCTCCCCTCATCGCCGCCGGAGGACGTCA
ACAGGCAAAGCCCGGGCGGCGG---CGGCGGTGGGGTTGTGCCCGTGCGTGGATGGGTGTGGGACAGGCCAGGAGCTTCG
TGCGTGGGCGAGGGCAGGCGAAGGCGACAGTGTGCAGACCTGGGCAGGCTCGTGTGGCGTGCTTGCAGCCGGACATGGGC
GGTCTAGGCTGGAAGACGGCGCAGATCCGTTCATCCGGATCCTCCTACGGGTGGGACTGGATCTGTAGGATTTGGGCAGG
ACCTTCCTCCTTGTGGCGCAGGAACCAGATTGGGGCCATGGCCAGAAAGGTTCGGCTCCATCGTGGTCAGCTCGGTTCAG
TGCCGATCTGGGTTGGATGCGGTCCTGGCTCTAGTGCTGGCTGCGCGGCTGCAAGTCGGTGATGATGATCTGTGTTTCCT
GCTTCA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS--------------S--S--SS--S-----SS---------------------SS----------
------S------S----------S--------S--------------S----S----SSSSSSSSSSSSS---------
----------S--------------------SS---S-------S-S-------------S--------------S----
---SS------S---------------------S---------S-------S-----------S-----S----------
---------------------------------------------S---S----------------S-------------
----------------S------------------------S-----S------------------------S-------
-S-S-------------------S-----S-----------S--------------------S--S--------------
---S-S-------------S-S-----SS-S---------S--S---------------------S-SS-----------
------------------------------------------------S----S--------------------S-----
------------S------------S-------------S-------S--------------------------------
------------------------------------------------------------S-------------------
----------S------------------S--------------S----------S-----------------S------
----------S------S-----------S--------------------------------------------------
---------------------S--------S--------S---------S-S--------S-------------------
-----------SSSSSSSSSSSS---S------------------S----------------------------------
-S-------S----S-----------S-------S--------------------------SSSS---S--------SS-
---S-S---------SS----S--S--S-S--S--SS---------------SS-S--S-------------SS-S----
-------------------S-------------S--S-----S---SSSS-----S------S---S---SS--S-----
---SS-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S-------S-----
------------S---------S--S------------------------S--------S--------SS----------
S-S-------------------SSS-----------S---------------SSS-------------------------
---------------S------------S----------------------S------------------S---------
------------------------------------------------S--S------------SS------S-------
-------------------------------------------------------------S------------------
---S-------------------S------------S-----------SS-----------------------------S
S-----
>forward_950
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--------------------------------------------------GCACACACACACACCATCAC----------
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>reverse_2315
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--------------------------------------------------------------------------GATGGG
CCTCGCATATGTGA------------------------------------------------------------------
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