>input_sequence_65670
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---------------------------------------------------------------ATGGAGAAGGCGGCGGA
GAACGTTGACGCCGGTGCGGCGGCGCAGCTGCAGCTGCAGCTGAAGCTGTTCGGGTCGTGGGCGAGCTCGTACACGCACC
GCGTGCAGCTGGCCATGCGGCTCAAGGGGCTCGCCTTCGAGTACGCGGAGGAGGACCTCGGTAACAAGAGCGACGCGCTG
CTGCGCCACAACCCCGTCTATAAGAAGGTCCCCGTGCTCGTCCACGACGGCCGCTCCCTCGCCGAGTCCGTCATCATCCT
CCAGTACCTCGACGACGCCTTCCCGGCCTCCCGCCAGCTCCTCCCCGCTGACGCCTTCGACCGCGCCGTCGCTCGCTTCT
GGTGCCACTTCGGCGACGACAAGGTACGCACACGGTTCCA------CGGCACTTGTGATGATTCTCCGACGCCCGTGGAA
AATGGCTGACCTGT-TCTGTGGAATGCAGCTTGGACCCGCGGTGGGGGCGGTGTTCGCGTCCACGGGGGAGGAGCAGGAG
GCTGCGGTGCGGCAGGTGCACGAGAACCTGGCGCTGATCGAGGCGGAGCTGCGGGAGGGGGCGTTCAAGGGCCGGCGTTT
CTTCGGCGGCGACGAGGTCGGCTTCCTCGACGTCGTCCTGGGCTGCGGCTCCTACTGGCTGGCCGTCTTCGAGGAGGTCA
CCGGCGTGCAGCTGGTGGACGCCCAGGCGTTCCCGCTCTTCCACGCCTGGCTGCGCGACTTCGAGGCGCAGGACGAGGTG
AGGGAGACCATCCCCTCCATCGACCGCCTCCTCGAGTACGCGCGCGGCCTCCGCCAGATGCTGGTCGCCATGGCCGCCGG
CGCCGGCGCTGGCGCAGCCTCGGCCGATGCCCCCACCGCCGCTCCGCCCGCCGCGGCGCCCCCGGCCGCCACCACGGCCG
ACATCGCCGTTGACATAT-----GA-------------------------------------------------------
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>chr1D_1_TraesCS1D01G257800
CGGGAGAACGGCGACTGCAGCAGCGGTGGAAGACGACGCTGGATCGGCGGCGGCCGCAGACGTTCGCGACAGCGGCATCA
CTGGGCGAGCCGAGAGACGGGGCAGCGCCGAGTCCGTCGTGGGAGAGCACGCCGCGGGGAGCTCAGATCCGGTGTCGGCG
GCCGCAACGGAGGTCGGAGGCCGGAGATCCAGGCGGCAGGGGCGCATGCCCAGCCGCCGCTTCCGCGGTCGCAAGAGCGC
CATAGTTAGGGGCACACTTGTCTAGACTTATCATCTGTCATATTTCACCATCTTGATCCAGTGCATTGTACAGTGATCAT
CACGCCGTGAAAGTTCAACTCTCCCCACCATTCTCTCCGCGGAGACGAGACTACCGACCTGGCCGGATTGTGCTGCAAGC
CAGCAAGCAGTATTGGGGAGCAAGTCGAGAGTTCTCGATCGACGTGCCTGCTTTTGACTCGGTAATGCAGACGCAAATCC
ACCAGAGCTGCGAGGCAAAAGCTAGCGGAGACTTCTCTGTTGTAACTGTCTCACCGCTGGTCCAGCTCGCCATGAACCAT
GATCCACCCCGTGAGAACTTCTTTACACCGACCGGATAAACAAATCACTACAGTAAAAGTAAAGTAATTACTGG------
------GCAGGTTCACACTTC-CAGTGAGTAGAAAGTCCACGACGA------GCCAGCCGGCGCCGGGCGGTGTACTACC
TTGCCGGGGAAGCCTCCCCGGCCCACCACCTCTCACCGTCTCCACCCATACACACACTGTCCTTCTCCGGCGCGCTAAAC
CCCAGCCAGCTGACATCCCGGGCCCACCGGTCCACCTCACTTACGTGTGGAGCCCACCTAACACCACCCCGCTCTATATA
AACCCTCTCCCTCCCTAGCTCCAAGCCACACACCAAAAAGAATCTCACTCCACTCCACTCCACTGCAAGCAACAATACAA
ACACCACTCGAGCATCCTAAGATCGACCAGAGTCCTTCCTTCCTT----TCACGTAGCCGGCCATGGAGAAGGCGGCGGA
GAACGTTGACGCCGGTGCGGCGGCGCAGCTGCAGCTGCAGCTGAAGCTGTTCGGGTCGTGGGCGAGCTCGTACACGCACC
GCGTGCAGCTGGCCATGCGGCTCAAGGGGCTCGCCTTCGAGTACGCGGAGGAGGACCTCGGTAACAAGAGCGACGCGCTG
CTGCGCCACAACCCCGTCTATAAGAAGGTCCCCGTGCTCGTCCACGACGGCCGCTCCCTCGCCGAGTCCGTCATCATCCT
CCAGTACCTCGACGACGCCTTCCCGGCCTCCCGCCAGCTCCTCCCCGCTGACGCCTTCGACCGCGCCGTCGCTCGCTTCT
GGTGCCACTTCGGCGACGACAAGGTACGCACACGGTTCCA------CGGCACTTGTGATGATTCTCCGACGCCCGTGGAA
AATGGCTGACCTGT-TCTGTGGAATGCAGCTTGGACCCGCGGTGGGGGCGGTGTTCGCGTCCACGGGGGAGGAGCAGGAG
GCTGCGGTGCGGCAGGTGCACGAGAACCTGGCGCTGATCGAGGCGGAGCTGCGGGAGGGGGCGTTCAAGGGCCGGCGTTT
CTTCGGCGGCGACGAGGTCGGCTTCCTCGACGTCGTCCTGGGCTGCGGCTCCTACTGGCTGGCCGTCTTCGAGGAGGTCA
CCGGCGTGCAGCTGGTGGACGCCCAGGCGTTCCCGCTCTTCCACGCCTGGCTGCGCGACTTCGAGGCGCAGGACGAGGTG
AGGGAGACCATCCCCTCCATCGACCGCCTCCTCGAGTACGCGCGCGGCCTCCGCCAGATGCTGGTCGCCATGGCCGCCGG
CGCCGGCGCTGGCGCAGCCTCGGCCGATGCCCCCACCGCCGCTCCGCCCGCCGCGGCGCCCCCGGCCGCCACCACGGCCG
ACATCGCCGTTGACATAT-----GACCATAGGCTGTGCACGCGTTGAACTGTGGTTTGTGTCGGTCGGACGTCG---TCG
TAGCTACTAGCTAGTATAGTTTCCCGTGTTGTGCGGTGCCGAGCATGTGGCGAGCCGCCATGAATTGCGCTGCTACCACT
ATAGTTAGTGGCGCAGTCTGGCT-AGGTGTCGTTTATTTCTTTCTCTTCTCTTTCTCTCATTGTTATGCGTTGTGTGTTT
GTAACTGGGAATCTTATGTGTTTGCTTCCTAGCTTT-CTTGTTTAGACATAATGCACGTGTGTGAGACTGGCATTTTCGT
TGGATTCAACGGCCTCATGAGCGAGAAGCTGACACTGTGTTCCTCCTACCAACGAGTGGATCACTAGTGCGCATTACATA
TTCTTTTAACTGCGGGTAACTCTGGCGGACCGGTATTACAATTTAACAACGGTTTT--CACCTCACAAGTTCACTATAGC
ACTATATTGATGCCAAGAGGGAGTGAAGTA--CCAGTCCGGCCCAAGTTGATTTATGCTAGTTCTGCCC--AAA-TGCTG
CGGTTAAACGTGGGTCAGGATGGCGGTCCAGCGACATGGTAACCATTTAATGCTACTGATCATATCAATGCCTGCTTCTG
T--TAAAGTGTAAACTTCTTGTTGAGAAT-------TCATCAGTGCGTGCGTTTGTCATGAAGCCTGCTGCTCATCCACA
CCGGCCATTAACTTCATGCCCTGCACCCAGATGCTGCATCATGCCATCATCGTGCCCAACTTG--------CGCTTGATG
GTTTCAGTTAATCCCTATCAC-AAAACACGATCAGAGAAACTTATCTCCAAAATGAATCCAACAAACTCAA--ATATCGT
TTTCCGGTGGCTCCATTTCCAGCGGCTGGCAGAGCGCGCCGGCGCTGACGGCAACGAACC-AAAGAGTGCACCGGGACAA
AAAATTCCTACCGCGGGC--------------------------------------------------------------
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--------------------------------------------GCTGCGGCCTGCAGATTTCATACGCACACCGATATG
GGCGCTGGCGGGCACGCAGAGCTCAGAGGCCGAGCATCGCCGCA
>chr1A_258
TTGTCTACAC----------------------------------------------------------------------
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----------------------------TATCATCTCTCATATTTCACCATCTTGATGCAGTGCATTGCACAGTGATCAT
CACGCCGTGAAAGTTCAACTCTCCCCACCATTCTCTCCACGGAGGCCAGACTACCGACCTGGCCGGATTGTGCCGCAAGC
CAGCGAGCAGTATTGGGGAACAAGTCGAGAGCTCTCGATCAACGCGCCTGCTTTTGACTCGGTAATGCAGACGCAAATCC
ACCAGAGCTGCGAGGCAAAAGCTAGCGGAGACTTCTCTGTTGTGACTGTCGCACCGCTGGTCCAGCTCG-------CCAT
GATCCTCCCCGTGACAACTTCTTTTCACCGACCGGATAAACAAATCACTACAGTAAAAGTAAAGCACTGTAGTTACTAAG
CAGTAAGCAGGTTCACACTTCTCAGTGAGTAGAAAGTCGACGACGACTCCGAGCCAGCCAGTACCGCTCTGTG---TACC
TTGCCGGGGAAGCCTCCCCGGCCCACCGCCCCTCGCCGTCTCCACCCA--CACACACCGTCCTTCTCCGGCGCGCTAAAC
CCCATCCAGCTGACATCCCGGGCCCACCCGACCACCTCACTTACGTGTGGGGCCCACCTACCACCCTCCCGCTCTATATA
AACCCTCTCCCACCCTAGCTCCAAGCCACACACCAAAAAGAATCTCACTCCACTCCACTCCACTGCAAGCAACAATACAA
ACATCATCCGAGCATCCTAAGATCGACCGGAGTCCTTCCTTCCTTACTTTCACGTAGCCGGCCATGGAGAAGGTGGCGGA
GAACGTTGACGCTGGCGCGGCGGC------GCAGCTGCAGCTGAAGCTGTTCGGGTCGTGGGCGAGCTCGTACACGCACC
GCGTGCAGCTGGCCATGCGGCTCAAGGGGCTCGCCTTCGAGTACGCGGAGGAGGACCTCGGCAACAAGAGCGACGCGCTG
CTGCGCCTCAACCCCGTCTACAAGAAGGTCCCCGTGCTCGTCCACGACGGCCGCTCCCTCGCCGAGTCCGTCATCATCCT
CCAGTACCTCGACGACGCCTTCCCGGCCTCCCGCCAGCTCCTCCCCGCCGACGCCTTCGACCGCGCCGTCGCTCGCTTCT
GGTGCCACTTCGGCGACGACAAGGTATGCATACACG----CGCACGCGGTGCTCGTGATGATTCTCTGACGCCCGTGGAA
CATGGCTGACCTGTTTCTGTGGAATGCAGCTTGGGCCGGCGGTGGGGGCGGTGTTCGCGTCCACGGGGGAGGAGCAGGAG
GCGGCGGTGCGGCAGGTGCACGAGAACCTGGCGCTGATCGAGGCGGAGCTGCGGGAGGGGGCGTTCAAGGGCCGGCGCTT
CTTCGGCGGCGACGAGGTCGGCTTCCTGGACGTCGTCCTGGGCTGCGGCTCCTACTGGCTGGCCGTCTTCGAGGAGGTCA
CCGGCGTGCAGCTGGTGGACGCCGAGGCGTTCCCGCTCTTCCACGCCTGGCTGCGCGACTTCGAGGCGCAGGACGAGGTG
AGGGAGACCATCCCCTCCATCGACCGCCTGCTCGAGTACGCGCGCGGCCTCCGCCAGATGCTGGTCGCCATGGCCGCCGG
CGCCGGCGCTGGCGCAGCCTCGGCCGACGCCCCCACCGCCGCTCCGCCCGCCGCGGCACCCCCGGCCGCCACCACGGCTG
ACATCGCCGTGGACATATGATATGACCGCAGGCCGTGCACGCGCTGAACTGTGGTTTGTGTCGGTCGGACGTCGTCGTCG
TAGCTACTAGCTAGTATAGTTTCCCGTGTTGTGCGGTGCCGAGCATGTGGCGAGGCGCCAAGAATTGCGCTGCTACCACT
A-----AGTGGCGCAGTCTGGCT-AGGTGTCGTTGATTTCTTTCTCTTCTCTTCCACTCTTTGTTATGCGTTGTGTGTTT
GTAACTGGGAATCTTATGCGTTTGCTTCCTAGCTTTGCTTGTTTAGACATAATGCACGTGTGTGAGACTGGCATTTTCGT
TGGATTCAACGGCCACATGAGCGAGAAGCTGACGCTGTGTTCCTCCTACCAACGAGTGGG----TAGTGCGCATTACAGT
TTCTTTTAACTGCGGGTAACTCTGGCGGACTGGTATCACAGTTTAGCAACGGTTTT--CACCTCACAAGTTCACTATAGC
ACTATATTGATGCCAAGAGGGAGTGGAGTA--CAAGTCCGGCCCAAGTTGATTTATGTTAGTTCTGCCCCAAAA-TGCTG
CGGTTAAACGTGGGTCAGGATGGGGGTCCAGCGGCGTGGTAACCATTTAATGCTACTGATTTTATCAACACCTGCTTCTG
C---AAAGTGTAAACTTCTCTACTATTGAGAATTCATTATCAGTGCGTGCGTTTGTCATGAAGCCTGCTGCTCATCCACA
CCGGCCATTAACTTCATGCCCTGCACCCAGATGCTGCATCATGCCATCATCGTGCCCAACTTGACAACTTCCGCTTGATG
GTTTCAGTTAATCCCTATCAC-AAAACACGATCAAAGAAACTTATCTCCAAAACAAATCCAAGAAACCCAATAATCTCGT
TTTG---------------CAGCGGCTGGCAGAGCGCGCCGGCGCTGACGGCAATGAACAAAAAGAGTGCATGGGGACAA
ATAATTCCTACCGCGGGCGGCAAAATTGATAAATTTAACCTATGAACGAAATCAAATTATAGAATGAACTGTCCGTGAAA
CTATTTCATAAGGTTGACCTTTACTATTTCACAAGGTTGATCTTTTTGTGTGACGCTTGACACAAAGGCGCAACACTACA
CTGTGCAACCTCACAGGTAGGCGCTACACGCCTGGCCAGCGTCGCACCCGTGTGATCCGAAAATTACTAAGTCAGTGTGC
ATCGCCTGAGAGCTAGGCGCCACACTATACAGTGTAGCGCCTAGCTTCTAAGCATTGCACTAGTGGTTGTTTCATTTTGT
AGTGCAACCACTAGTGCAGTGCCTGAGAGCTAGGCGCCACACTATACAGTGCAGCGCCTAGCTCTTAGGCTCTGCATAAT
GACTTAGCAATTTTTAGGCAGTCTGGGATGCAACGTTGGCCAGGCGTGTAGCGTCTATCTGTGAGGCGTTGTACATTGTA
GTGTGACGACTTGGTGTCGGGCGTCACATAAAAAGGTCAGCCGCGTGAAATAGTTTCACGGACAGTTCATTCTGTGATTT
AATTTCGTCTACAGGTCAAATTTATTAAATTTGCCACCGCGGGCGCTGCAGCCTGCAGATTTCATATGCACACCGATATG
GGCGCTGGCGGGCACGCAGAGCTCAGAGGCCGAGCACCGCCGCA
>chr1B_258
TTGTCTACAC----------------------------------------------------------------------
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----------------------------TATTATCTGCCATATTTCACCATCTTGATGCAGTGCATTGTACAGTGATCAT
CACGCCGTGAAAGTTCAACTCTCCCCACCATTCTCTCCACGGAGGCCAGAATACCGATCTGGCCGGATTGTGCCGCAAGA
CAGCGAGCAGTATTGGGGAGCAAGTCGAGAGTTCTCGGTCGACGTGCCTGCTTTTGACTCGATAATGCAGACGCAAATCC
ACCAGAGCTGCGAGGCAAAAGCCAGCGGAGACTTCTCTGTTGTAACTGTCTCACCGCGGGTCCAGCTCGCCATGAACCAT
GATCCACCCCGTGAGAACTTCTTTAGACCGACCGGATAAACAAATCACTACAGTAAAAGTAAAGTAATTACTAG------
------GCAGGTTCACACCTCCCAGTGAGTACAAAGTCCACGACGA------GCCAGCCAGCGCCGGGCGGTG---TACC
TTGCCGGGGAAGCCTTCCCGGCCCACCACCCCTCATCGTCTCCACCCA--CACACACTGTCCTTCTCCGGCGCGCTAAAC
CCCAGCCAGCTGACATCTCGGGCCCACCCGTCCACCTCACTTACGTGTGGAGCCCACCTAACACCCTCCCGCTCTATATA
AACCCTCTCCC-CCCTAGCTCCAAGCCACACACCAAAAAGAATCTCACTCCA-----CTCCACTGCAAGCAACAATACAA
A----------------------------------------------------GTAGCCGGCCATGGAGAAGGCAGCGGA
GAACGTTGACGCTGGTGCGGCGGC------GCAGCTGCAGCTGAAGCTGTTCGGGTCGTGGGCGAGCTCGTACACGCACC
GCGTGCAGCTGGCCATGCGGCTCAAGGGGCTCGCCTTCGAGTACGCGGAGGAGGACCTCGGCAACAAGAGCGACGCGCTG
CTGCGCCAAAACCCCGTCTACAAGAAGGTCCCCGTGCTCGTCCACGACGGCCGCTCCCTCGCCGAGTCCGTCATCATCCT
CCAGTACCTCGACGACGCCTTCCCGGCCTCCCGCCAGCTCCTCCCCGCCGACGCCTTCGACCGCGCCGTCGCTCGCTTCT
GGTGCCACTTCGGCGACGACAAGGTATGTGCTAATGTGCACGCCCGCGGCGCTCGTGATGATTCTCTG-------TGGAG
AATGGCTGAACTGTTTCTCTGGAATGCAGCTTGGGCCTGCGGTGGGGGCGGTGTTCGCGTCCACGGGGGAGGAGCAGGAG
GCGGCGGTGCGGCAGGTGCACGAGAACCTGGCGCTGATCGAGGCAGAGCTCCGGGAGGGGGCGTTCAAGGGCCGGCGCTT
CTTCGGCGGCGACGAGGTCGGCTTCCTCGACGTCGTCCTGGGCTGCGGCTCCTACTGGCTGGCCGTCTTCGAGGAGGTCA
CCGGCGTGCAGCTGGTGGACGCCGAGGCGTTCCCGCTCTTCCACGCATGGCTGCGCGACTTCGAGGCGCAGGACGAGGTG
AGGGAGACCATACCCTCCATCGACCGCCTCCTCGAGTACGCGCGCGGCCTCCGCCAGATGCTGGTCGCCATGGCCGCCGC
CGCCGGCGCTGGAGCAGCCTCGCCCGACGCCCCCACCGCCGCTCCACCCGCCGCGGCGCCCCCGGCCGCCACCACGGCCG
ACATCGCCGTGGACATAT-----GACCGCTGGCTGTGCACGCGTTGAACTGTGGTTTGTGTCGGTCAGACGTCGTCGT--
-AGCTACTAGCTAGTATAGTTTCCCGTGTTGTGCGGTGCCGAGCATGTGGCGAGGCGCCATGAATTGCGCTGCTACCACT
ATAGTTAGTGGCGCAGTCTGGCTTAGGTGTCGTTTTTTTTCCTTTCTCCTCTCTATTTA----TTATGCGTTGTGTGTTT
GTGACTGGGAATCTTATGTGTTTGCTTCCTAGCTTTGGTTGTTTAGACATAATGCACGTGTGT----CTGGCAGTTTCTT
TGGATTCAACGGCCTCATGAGCGAGAAGCTGACACTGTGTTCCTCCTACCAACGAGTGGATCATTGGTGCGCATTACAG-
TTTTTCTAACTGCGGGTAACTCTGGCGGACTGGTATTACAGTTTAACAACGGTTTTCACACCTCACAAGTTCACTATAGC
ACT----TGATGCCAAGAGGGAGTGAAGTACACCAGTCCGGCCCAAGTTGATTTATGCTAGTTCTGCCC--AAAATGCTG
CGGTTA-ACGTGTGTCAGGATGGGGGTCCAGCGGCATGGTAACCATTAAATGCTACTGATCGTATCAATACCTGCTTCTG
TAATAAAGTGTAAACTTCTCTACTATTGAGAATTCATCATCAGTGCGTGCGTTTGTCATGAAGCCTGCTGCTCATCCACA
CCGGCCATTAACTGCATGCCCTGCGCCCAGAATCCAGATCATGCCATCATCGTGCCCAACTC--------CCGCTTGATG
GTTTCAGCTAATCCCTATCACAAAAACACGATCAAAGAAACTTATCTCCAAAATAAAAT-----------A--ATCTCGT
TTTGCAGCGGCTCCATTTCCAGCGGCTGGCAGAGCGCGCCGGCGCTGACGGCAATAAACC-AAGGAGTGCACCGGGACAA
ATAATTCCTACCGCGGGC--------------------------------------------------------------
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--------------------------------------------GCTGCAGCCTGCAGATTTCATACGCACACCAATATG
GCCGCTGGCAGGCACGCAGAGCTCAGAGGCCGAGCATCGCCGCA
>SNPs
SS-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------S----------------------
--------------------------------------S-----S-S--------------------------S------
----S---------------------------------------------------------------------------
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------------------------------------------------------------------------S-------
-----------------------------------------------------------S-------------SSS----
------------------------------S-----------------SS------------------------------
----------------------------S------------------------------------SS-------------
-----------S--------------------------------------------------------------------
---S--SS--------------------S---------------------------------------------------
------------S-----------SSSSSS--------------------------------------------------
-------------------------------------------------------------S------------------
--------------------S-----------------------------------------------------------
------------------------------------------------S-------------------------------
--------------------------S------SSS-S------------S--S------------S-------------
----------------------------------S--S------------------------------------------
--S--------------------------------------------------------------------------S--
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-----------------------S--------------------------------------------------------
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---------------------------S----------------------------------------------------
----------S----------------SS---------------------------------------------------
------------------------------------------------------S-------------------------
-----------------------------------------------------------S--------------------
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---------------------------------------------------------------S--------------SS
------------------------------S---------S---------------------------------------
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-----------------------S---------S---------------------------S-------S----------
-------------------SSSSS-SSSS---------------------------------------------------
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----------------------------------S-------------------S-------S----S-------S----
---S-S-S----------------------------------------------S-------------------------
-S------------------------------------------------------------------------------
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>forward_770
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------------------------------TCTCACCGTCTCCACCCATA------------------------------
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>reverse_2589
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----------------------------TTCATCAGTGCGTGCGTTTG--------------------------------
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