>input_sequence_65661
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------ATGGCGTCGGAGGCCAGGTCCG
GGGGCGCGCGGCGGGTTCCGCTGCGGCCGAGGGACGGCAACGCGGCCGC---CTCCCCGTCCTTGGGCGGCGCCGCCCTT
GCAAAATCGAAGGCGAAGGCGAA------GGC---GGCTGCTGCGTCTCCGCCGTCGGTGAGGTCGTATGCCGGCAGGGC
TGAGGTTGAGAGCAG---GGCGGCGGCGGTGGTGAGGGAGAAGGAGGTGTCGCTGGCGGAGGAGCTGGAGAAGGCGCGGG
AGCGGCGGGGCCGGCTGCGGGCCGCGCGGCAGGTCACGGAGCGGGCGCTGGCGGAGGCCGACGAGGCGCTGCGGCGGGAG
ATGCGGGAGTGGGAGCGCCGGGCGGACGAGCAGCGCCGGGTCGTGGCGGAGCTGATGCGCCTCATCGGGATGCCCGAGGT
ACGG---T---------------------------TCCGTCTGTTTCGATTCCGTTTGGTAGACGTTCT----GCCGCTC
GATTCTCAAGTTCTGTGGGGATGATGCTGATCGT----GGC---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---GGCGGCAGGTGTAT----GTTCCGGTGGAATCGCTGAGATCAAGGGAGGAGAGGAAGAGGAAACAGGGGACCGCGTC
TTCAGATCCTCCGGTAAATGCTCTCTGCTCCCC---GTTCTTATTTTCACATCACTGATTGGCAAAAATTGTGCCTGAAT
CTAAC-------ACATGCTTAAATTCATTGAGAAACAAAAATATTCCTGAACTGAATCTCACACGCTTAAAATTCGTTTA
GAAATCAGGATCCTATACTGTATTG---TTTGCCTGGACGAAATGCTTTTTA---TTCTGATTCGAAACTCCATTCACAT
GTTTCAGGGTCCGGTCACAGTGGCTTCAACATTACTAGAGGAAGAAGCCGGAGCAGATCCCTCCGATCAGGGACTGCTGG
CGACGCCGACAAGGGAAGCGA---------------CAACCGAAAGCAGCAGCACTTG---A------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
>chr5D_1_TraesCS5D01G360000
TGAGACGTTGGCTGCCGATGAAGAGAGCCAATAAGAAAGGCAGATAGAGGGAAGGGTAAAGATGTTCTGTTGTAGCCTGG
CTGAAGAAATTGCAGTTTTTCGGCCAACAATGAGGGTGGTGTTAACTCCTTCAAGGTGTTCCTCCTCGAGCACCAGGGAA
AACCCTAGGTTCGATTTGTTCGACCAGGCGGCAACAAAAAGCAATGATGTTGTTCCTTCCTTGAGGCACTTTTTAGGTTG
CCAGTGGGGGTCCCGATCAGATGTGGCAGTCGGAGATGTAGATTGGGCGGCATGATGTTGAGTTGTTGCCCTGGCGTGCG
GCATTACATACAGCGTGGGGGCCATCCGGCCATGGTGTAATTAAGCTGGAAGTGACGCTTTTGTTGGACGATATCTACAC
AGGTTTCAGCTAGGTCCTGCCATCCACTCGTCGACTCCTCCTTAAATGATTGTAAACTGTTATTTTCATACTACTCCCTC
CGTTTCTAAATATAAGCAATTTTATAAATTTTAATATGTACTACATTTAGATGTATGCACACATATTTTAGACTATAAAT
TCATTCATTTTGCTTCATAAGTAGTCCGTATTGGAATATAGCTCTTCCTTTCATTCGT-TTCAAAAGGAAAAGATACC--
-------CAGCACGTCATCCGGCAAACGTTCCCCGAGAACCCCGCAAAAGAGCATCGTCATCATGCATCTA--------T
CCATCTCAGCGCCGCCGAAAGCCATCCAAACGAAGACCAGGCAAGGCCGAGACTGCCCTCGGCCATCTTGCCTGCGCCCC
CACGTTCCCCACGGGCAAACCCGTCCATCCACGCCTCCACGCCGTGCCCAGAGTTACTAGCCGTTGTTACTAGTCTGAAC
CCTCTCTCCCACCCCTTCAAATTCGAACCCCCCAAACCGCTCGCGAAATCCCCAAATCAACGCCTCCTCACGGCAATCAA
TCAAGCAATCATCCATTCACCCCGGGAGAGGCGCGCGCGGGGCTCCTCGTCCACTCCGATGGCGTCGGAGGCCAGGTCCG
GGGGCGCGCGGCGGGTTCCGCTGCGGCCGAGGGACGGCAACGCGGCCGC---CTCCCCGTCCTTGGGCGGCGCCGCCCTT
GCAAAATCGAAGGCGAAGGCGAA------GGC---GGCTGCTGCGTCTCCGCCGTCGGTGAGGTCGTATGCCGGCAGGGC
TGAGGTTGAGAGCAG---GGCGGCGGCGGTGGTGAGGGAGAAGGAGGTGTCGCTGGCGGAGGAGCTGGAGAAGGCGCGGG
AGCGGCGGGGCCGGCTGCGGGCCGCGCGGCAGGTCACGGAGCGGGCGCTGGCGGAGGCCGACGAGGCGCTGCGGCGGGAG
ATGCGGGAGTGGGAGCGCCGGGCGGACGAGCAGCGCCGGGTCGTGGCGGAGCTGATGCGCCTCATCGGGATGCCCGAGGT
ACGG---T---------------------------TCCGTCTGTTTCGATTCCGTTTGGTAGACGTTCT----GCCGCTC
GATTCTCAAGTTCTGTGGGGATGATGCTGATCGT----GGC---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---GGCGGCAGGTGTAT----GTTCCGGTGGAATCGCTGAGATCAAGGGAGGAGAGGAAGAGGAAACAGGGGACCGCGTC
TTCAGATCCTCCGGTAAATGCTCTCTGCTCCCC---GTTCTTATTTTCACATCACTGATTGGCAAAAATTGTGCCTGAAT
CTAAC-------ACATGCTTAAATTCATTGAGAAACAAAAATATTCCTGAACTGAATCTCACACGCTTAAAATTCGTTTA
GAAATCAGGATCCTATACTGTATTG---TTTGCCTGGACGAAATGCTTTTTA---TTCTGATTCGAAACTCCATTCACAT
GTTTCAGGGTCCGGTCACAGTGGCTTCAACATTACTAGAGGAAGAAGCCGGAGCAGATCCCTCCGATCAGGGACTGCTGG
CGACGCCGACAAGGGAAGCGA---------------CAACCGAAAGCAGCAGCACTTG---ATCCCTTTCTTTGCCACAT
TGGCCTGTTTCAAATTGTT-CTGCGCAAGGCCTCCGAATGAAATCAAATGGCTTGTTTGGTACTATCTGCT----TGCGT
CCATACATGATATGGGATGGTTTTGAATGTTCAGCGTATAGAGAACTTGTATGAATCGCT-CGTCTACACATGACTTCCT
TCTCTATTTTTTCTTTCGAGCAAAGGAAAGGAGCCCAGGCTCCGAATCTCATTTTCACGGAACTGAAAAAACAATCACCA
AGAAAGGGAGGAAAAACTATCGCCCCAAAACAGCACGCCCGCAGCAAAACTAGCTTGCCGAGCTAAACAGACTCCCCAGG
GGACAAAACACAGGGGAACATCACTCTCGGTATACACAAGACAGCCACACCTATGCTCAACAGATCAGCAACAAAACGAA
GCACTAACTGAAACCGCACCAAATCATAGTAAAGAACTGCAACTCAGCAGCTTCTCACCAGCAGTAGCATCAGGCCCATC
CGATCCTAGGAACAGCCAGCGTCCAAAGAAATCATGAGCCACCAAAAAAAAAAAAAGCACCAGCATGTTTGCCGCACTGC
GACATGGGTTTCGCCCCCTTGGTTTCTGCCGTCCAGACCAGTAGGTAAGCCAATGAGCTATTTAGAATAACTACACCAGT
AGGATCTAAAGGACAATAATGCCATTAAAACATGCACTATTCCTGGTTTTCCCCTTGATTTCCCTTTTTGTTGGGAAGAA
TAATTGTGTGTCTGGAGTATATGAGTTTCCTGAGAAGCAGCAGCAAGGTGGAGCCAATACCCGGTGAGTGTGACCCGGGG
CAGCTACCGGGCCGGGGCTCACTCGGCGGCAAGCTGGTGTAGATTCGTATGTGATATGATCCAGTTGTCAGCTAATTTTG
GCGTGATTTGCCCGGACAAATAAAAATGCTTGGGCCTTGCTTCTTGCTTCTAGGCCCAACTAGCTAAGCATAAACGGCTG
TGTTGTTTCTTGGGCTAATGGCCGCACG
>chr5B_595
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------AATGTAGCCCTTCCTTATTTTTTGGTTCAAAAGGAAAAGATACCCA
ACGCCACCGGCACGTCATCCGGCAAACGTTCCCCGAAAACCCAGCAAAAGAGCACCGTCATCATGCATGTGTTCGTGAGT
CCATCTCAGCGCCG---AAAGCCATCCAAACGAAGACCAGGCAAGGCCGAGACTGCCCTCCGCCGTCTTGCCCCCGCCCC
CACGTTCCCCAGGGGCAAACCCGTCCACCCACGCCTCCACGCCGTGCCCAGAGTTACTAGCCGTTGTTACTTCCACC---
-----------CCCCTTCAAATTCGAA-CCCCCAAACCGCTCGCGAAATCCCC-AATCAACGCCTCCTCACGGCAATCAA
TCGCT--------CACTCACGCCGCGAGAGGCGCGAGGGAGGCTCCTCCTCCACTCCGATGGCGTCGGAGGCCAGGTCCG
GGGGCGCGCGGCGGGTTCCGCTGCGGCCGAGGGACGGCAACGCGGCCGCGGCCTCCCCGTCCTTGGGCGGCGGCGCCCTT
GCAAAGTCGAAGGCGAAGGCGCG------GCC---GGCTGCCGCGTCGCCGCCGTCGGTGAGGTCGTACGCGAGCCGGGA
T------------------GCGGCGGCGGTGGTGAGGGAGAAGGAGGTGTCGCTGGCGGAAGAGCTGGAGAAGGCGCGGG
AGCGGCGGGGCCGGCTGCGGGCCGCGCGGCAGGTCACGGAGCGGGCGCTGGCGGAGGCGGACGAGGCGCTGCGGCGGGAG
ATGCGGGAGTGGGAGCGCCGGGCCGACGAGCAGCGCCGGGTCGTTGCCGAGCTGATGCGCCTCATCGGGATGCCCGAGGT
ACGG---TGTTCTC----------------------CCCTCTGTTTTGATTCAGTTTGGTAGCTGGTCT----GGTGCTC
GTTTCTGAAGCTCTGTCGGATTGATGCTAATCGT----GGC---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---TGCGGCAGGTCTAT----GTTCCGGTGGAATCGCTGAGATCCAGGGAGGAGAGGAAGAGGAAACAGGGGGCTGCGTC
TTCAGATTCTCAGGTAAACGCTCTG--C---TGCTC----------TCGCATCACTGATTGGCAAAAAT-GTGTCTGTGC
CTAAC-------ACATGCTTGTATTCGTTGAGAAACAAAATG-TGACTGAACTGAATCACACACGCTT-AAATTCGTTTA
GAAATCAGGATCCTATACTGTATTG---TTTGCCTGGACGAAATGCTTTTTAGTATTTTGATTCGAAACTCCATTCCCAT
GTTTCAGGGTCCGGTCACGGTGGCTTCAACACTACTAGAGGAAGAAGCCGGGGCAGATCCCTCCGATCAGGAACTGCTGG
CGACGCCGACAAGAGAAACGAGT---GCAGCAGCAGCCACGGAAAGCAGCAGCGTTTGATCATCCCTTTCTTTGCCACAT
TGGCCCGTTCCAAACTGTTTCTGCACAAGGCCTCCGAATGAAATCAAATGGCTTGTTTGGTA---TCTGCTTGCGTGCGT
CCATACATGATATGTGATGTCTGTGAATCTTCAGC--ATAGACAACTTGTATGAATCGCT-CCCCTACACATGACA----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------TGATTTCCTCTTCTGTTGGGAAGAA
TGATTGTGTGTCTGGAGTATATGAGTTTCCTGAGAAGCAGG---AAGGTGGGGCCGGTACCCGG----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
>chr5A_595
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------AATATAGATCTTCCTTCCATTCGT----AAAAGGAAAAGATACCGA
GCGCCAGCAGCACGTCATCCGGCAAGCGTTCCCCGAGAACCCCGCAAAAGAGCATCGTCATCATGC--------GTGTGT
CCGTCTCAGCGCCG---AAAGCCATCCAAATGACGACCAGGCAAGGCCGAGACTGCCCTCGGCCGTCTTGCCTGCGCCCC
CACGTTCCCCACGGGCAAACCCGTCCAT-------------------CCAGAGTTACTAGCCGTTGTTACT---CTGAAC
CCACTCTCCCAACCCTTCAAATTCGAACCCCCCAAACCGCTCGCGAAATCCCCAAATCAACGCCTCCTCACGGCAATCAA
TCAAGCAATCATCCATTCAC---------GACGCGAGCGGGGATCCTCCTCCACTCCGATGGCGTCGGAGGCCAGGTCCG
GGGGCGCGCGGCGGGTCCCGCTGCAGCCGCGGGACGGCAACGCGGCCGC---CTCCCCGTCCTTGGGCGGCGGCGGTGCC
GCCAAATCGAAGGCGAAGGCGAAGGCGCGGGC---GGCCGCCGCGTCGCCGCCGTCGGTGAGGTCGTATGCGAGCCGGGA
CGAGGCCGAGCGGAGGGCGGCGGCGGCGGTGGTGAGGGAGAAGGAGGTGTCGCTGGCGGAGGAGCTGGAGAAGGCGCGGG
AGCGGCGGGGCCGCCTGCGGGCCGCGCGGCAGGTCACGGAGAGGGCGCTGGCGGAGGCCGACGAGGCGCTGCGGCGGGAG
ATGCGGGAGTGGGAGCGCCGCGCGGACGAGCAGCGCCGGGTCGTCGCGGAGCTGATGCGCCTCATCGGGATGCCCGAGGT
ACGG---T-----C----------------------CCGTCTCTTTCGATTCCGCTTGGTAGATGTTCCTGAAGGCGCTC
GTTTCTCAAGCTCTGTGGGGATGCTGCTGATCATGACGGGC---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---GGTGGCAGGTGTAC----GTTCCGGTGGAATCGCTGAGATCCAGGGAGGAGAGGAAGAGGAAACAGGGGACCGCGTC
TTCAGATCCTCCGGTAAATGCTCTG--C---TCCTCGTTTCTATTTCCACATCACCGATCGGCAAAAAT-GTGTCTGAAT
CTAATACGGAGTACATGCTTAAATTCGTCGAGAAACAAAATG-TGCCTGAACTGAATCTCACATGCTC-AAGTTCGTTGA
GAAATCAGGATCCTGTACTTTATTATTATTTGCCTGGACGAAATGCTTTTTTC--TTTTGATTCGAAACTCCATTCACAT
GGTTCAGGGTCCGGTCACAGTGGCTTCAACATTACTAGAGGAAGAATCTGGACCATGCCTCTCCGATCAGGAACTGCTGG
CGACGCCGGCAAGGGAAACGACCGCCGCCGCAGCAGCGACGGAAAGCAGCAGCGCTTG---ATCCCTTTCTTTGCC----
-----TGTTCCAAACTGTTTCTGCACAAGGCCTCCCAATGAAATCAAATGGCTTGTTTGGTAGTGTCTGCTTGCGTGCGT
CCATACATGATATGTGATGCCTGAGAATGTTCAGC--ATAGACAACTTGGATGAATCACTGTC-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
>chr6D_955
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------CCATTCACGCCGCGAGAGACGCGAGCGGGGCTCCTCCTCCAGCCCGATGGCGTCTGAGGCCAGGTCCG
GGGGCGTGCGGCGGATTCCGCTGCAGCCGAGGGACGGCTACGCCGCGGC---CTCCCTGTCCTTGGGTGGCACCGCCCTT
GCCAAATCGAAGGCGAAGGCACC------GGC---GGCTGCCGCGTCGCCGCCGTCGGTGAGGTCGTATGCTGCCAGGGC
TGACGCGGTGAGCAG---GGC-GCGGCGGTGGTGAGGGAGAAGGAGGTGTCGCTGGCAGAGGAGCTAGAGAAGGTGCGGG
AGCGGCGGGGA---------------------------------------------------------------------
------------------------------------CGGGTCGTGGTGGAGCTGATGCGCCTCATCGAGATGCCGTAGGT
ATGG---TTGTTGTCCACTGAGAACCGCCACGTCTTCCCTCTGTTTCGATTCCGTTTGGTAGTTGTTCT----GGCGCTC
GGTTCTGAATGTCAATGGTGATTTAGTTCTAGGTCTTTTCCCCAAATCCTAATTCCCGTTCTCGGCTGCTATCCTGC---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------TATT
CCGACGAGTGTTCTGACTTCTCTGATGATGTGCAGATTTTGATTGCCTTGTGAACTTGATTCAGATTATCAGATGTTAAG
TCAGTCAACCATGTGTTTGCGTGCCATGTAAATTTCCATCGCCATGGGGTTAACCTGTTTCTACAAATTAAAGTAACTTG
ATTAAGGTGTTAAATCTGTCAAGCGGTCAGTCACAGTACTGAGCAGTCAACCATGTCCTGATTTAGAGAAGTAACATTTT
TTTTGAAATAGAAGAACATGCAGTCCTTTTACAAATGAAAGAGAGGCAAAGAAAGTGTTGAACAAGAACAACTATCAGCA
CAACATGTTGTGAGTTGCACATCCTTTTTTGCATTCATTTTGAAAAATGACCCCTTCTTAGTTGCTTGTCACGCTCGGCC
ACTGGTTGCAGGTCTAT----GTTCTGGTGGAATCGTTGATTTCTAAGGAGGAGAGGAAGAGAATACAGGGGACTGCGTC
CTCAGATTCTCAGGTAAATGCTCTG--C---TC---GTTTTTATTTTCACATTACTGATTGGCAAAAATTGTGCTTGTGT
CTAAC-------ACATGCTTAAATTCATCGAGAAACAAAATG-TTCGTGATCTGAATCTCACATGCTT-AAATTCGTTGA
GAAATCAGGATCCTATACTTCATTA--ATTTGCCTAGACGAAATACTTATTAGTATGATTTGTAAT---TCCATTCACAT
GTTTCAGGGTCCGGTCATAGTGGCTTCAA---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
>chr5A_992
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------TCCAGTACGATGGCGTCGGAGGCTAGGTCCG
GGGGCGCGCGGCGGATTCCACCTCAGCCGAGGGACGACAACGCGGCGGC---CTCCCCGTCAGT---CGCCATCGGCGTT
GCCAAATCGAAGGCGTAGGCACG------GGT---GGCT---GCGTCTCCGCCGTCAGCGAGGTCCTATGCCAGCCGTGC
CGAGGCGGAGAGCA------CAGCGGCGGCGGTGAGGGAGAAGGAGGTGT-GCTGGCGGAGGAGCTGGAGAAGCCGCGGG
AGCGGCGGGGCCGGCTGCGGGCCGCGAGGCAGGTCACGGAGAGGGTGCTGGCGGAGGCGGACGAGGCGCCGCGGCGGGAG
ATGCGGGAGTGGGAGTCCAGGGCGGACGAGCAGCGCCGGGTCGTGGCAGACCTGATGCGCCTCATCGGTATGCCGGAGGT
ACGG---T---------------------------TCCGTTTGTTTCTATTCTGTTTGGTAGATGCTCT----GGCGCTT
GATTCTAAATGTCTGTGGGG----TGCTGATCAT----GGC---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---GGCGGCTGGTCTAT----GTTCCACTGGAATAGCTGAGATCCCGGGAGAAGAGAAAGAGGAAACAGGGGACCG----
-------------GTAAATGCTCTCTACTCATC---GCTTTTTGTTTTTCTGG-CTGGTTGGCAAAAAT-GTGTCTGGAT
CTCACGTTTTC----TGCTCAAATTCATCGAGAAATCTAAACTCTGCACTTTGATTAGTCGA------------------
----------------------------------TGGACGAAATGCTTG-----ATTTTGATCTGTCCTT-------CAT
GTTTCAGGGTCCGGTCACAGTGGCTTCAACACTACTAGAGGAAGAAGCTGGAGCATATCTCACCGATAAGGAATCGCTGG
CGACACCGACAAGAGAAATTATG------GCAGCAGCAATCGAAAGCAGCAGCTCTTG---ATCCCTTTCTTTGCCACAT
TGGCCTGGTCCAAACTTTT--------AGGCTTACAAATGAAATCAAATGGCTTGTTTGGTA---TCTGCTTGCGT----
CCATACATGATATATGATGGTTTTGAATGTTCAGC--ATAGACAACTTATTTGAATCGCCGCGTCTAGACATGATTTCCT
TTTCT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
>chr6A_992
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------TCCAGTACGATGGTGTCGGAGGCCTGGTCCG
GGGGCGCGCGGAGGATTCCACTTTAGCCGAGGGACGGCAACGCGGCGGC---CTCCCCGTCAGT---CGCCATCGGCTTT
GCCAAATTGAAGGCGTAGGCATA------GGCGCGGGCGGCTGCGTCTCCGCCGTCGGCGAGGTCCTATGCCAGCCGTGC
CGAGGCGGAGAGCA------CGGCGGCTGCGGTGAGGGAGAAGGAGGTGT-GCTGGCAGAGGAGCTAGAGAAGGCGCGGG
AGCGGTGGGGCCGGCTGCGGGACGCGAGGCAGGTCACGGAGAGGGTGCTGGCGGAGGCAGACGAGGCGCCGCGGCGGGAG
ATGCGGGAGTGGGAGTGCAGGGCGGACGAGCAGCGCCGGGTCGTGGCAGAGCTGATGCGCCTCATCGGGATGCCGGAGGT
ACGG---T---------------------------TCCATTTGTTTCGATTCTGTTTGGTAGATGCTCT----GGCGCTT
GATTCTCAATGTCTGTGGGG----TGCTGATCAT----GGC---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---GGCGGCTGGTCTATATATGTTCCACTGGAATAGCTGAGTTCCCGGGAGGAGAGAAAGAGGAAACAGGGGACCGCGTC
TTCAGATCCTCCGGTAAATGCTCTG--C---TCATCGGTTTTTTGGCC----TACAGGTTGGCAAAAAT-GTGTCTGGAT
CTCAC---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
>chr1D_1040
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------CCGCTGCAGCTGAGGGACGGCAACGCGGCGGC---CTCCCTGTCCTTGGGCGGCGCCGCCCTT
GCAAAATCGAAGGCGAAGGCACC------GGC---GGCTGCCGCGTCGCCGCCGTCGGTGAGGTCGTATGCTGCCAGGGT
TGACGCGGAGAGCAG---GGCGGCGGCGGTGGCGAGGGAGAAGGAGGTGTCGCTGGCAGAGGAGCTGGAGAAGGTGCGGG
AGCGGCGGGGA---------------------------------------------------------------------
------------------------------------CGGGTCATGGCGGAGCTGATGCGCCTCATCGAGATGCAGTGGGT
ATGCGTCT---------------------------TCCCTCTGTTCTGATTCCGTTTGGTAGTTCTTCT----GGCGCCC
GGTTCTGAATGTCAATGGTGATTTAGTTCTATGTCTTTTCCCCAAATCCTAATTCCCGTTCTCGGCTGCTATCCTGCTAC
ATCAAGGCTTCGGCAGCCCGCCGGCTGCGAATCGCCGCCGCACGCCAGCCCGCTGCGTCTGCTGCATCTACTGCATTATG
AATCAGTTTGAAAAAGAAACTGGAGTGTTTGTTGAGAAATTATTTCTCATGGCAGAGTCCTAATTTTTGTTGGCTTTTGC
AGGTCTCAATTATCTGTATTCGGTGGTGAAACACTGAAACTAGAGATACAGTGGAGTGACTTTCCTGTAGAGGGAATTAG
GGAGGTTTATTCTGATGAGATTATTTCCCATGAGATATAGACACGATGCAAAACCAAGGTATGCTCATGCGCATAATTCA
TACCCTAGTAAGTACAGATATGTAGCAATAGTGAGGGAGTGGTGCATGTCTTAATTCATTAAGCCACTGTGAAATTACTA
TTAATTAAGATAGTACAGCAGGCACTAGTAATAGTGCTGCTGTTGCTGATATTGCCATTGCCACATTTCACTGCACTCGT
ATACGCGCACTTTGATTATCTGTGCCACTTTTTTTGCCTGTCTAACGAGCACATATTTTAGTAAAAACTGGAGGAGCGCA
GAGTTCTCGTGATGTGCATTATGCCCCTTCTCATGATGTGCGCTACCCTCAGGGCCAGCGCATAATGCGATGAGCGCCAA
TGAACAGACAAACGGTAAACTGTTGGCTGCTGCCGAAGGAGCAAGCAATGTTCAGTTCCGACAAGTGATAAAGTGGTATT
CCGACGAGTGTTCTGACTTGTCTGATGATGTGCAGATTTTGATTGCCTTGTGAACTTGATTAAGATTATCAGATGTTAAG
TCATTCAACCATGTGTTTGCGTGCCATGTAAATTTCCATTGCCATGGGGTTAACCTGTTTGTACAAATTAAAGTAACTTG
ATTAAGGTGTTAAATCTGTCAAGCGGTCAGTCACAGTACTGTGCAGTCAGCCATGTCCTGATTTAGAGAAGTAACATTTT
TTTTGAAATAGTAGAACATGCAGTCCTTTTACAAATGAAAGAGAGGCAAAGAAAGTGTTGAACAAGAACAACTATCAGCA
CAACATGTTGTGAGTTGCACATCCTTTTTTGCATTCATTTTGAAAAATGACCCCTTCTTAGTTGCTTGTCACGCTCGGCC
ACTGGTTGCAGGTCTAT----GTTCCGGTGGAATCGTTGATTTCTAAGGAGGAGAGGAAGAGAATACAGGGGACTGCGTC
TTCAGATTCTCAGGTAAATGCTCTG--CTCCTC---GTTTTTATTTTCACATCACTGATTGGCAAAAATTGTGCTTGTGT
CTAAC-------ACATGCTTAAATTCATCGAGAAACAAAATG-TTTGTGATCTGAATCTCACATGCTT-AAATTCGTTGA
GAAATCAGGATCCTATACTTCATTA--ATTTGCCTAGACGAAATACTTATTATTATGATTTGTAAT---TCCATTCACAT
GTTTCACGGTCCGGTCATAGTGGCTTCAA---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------S-----------------------------
--------------------------------------------------------------------S-S---------
--------------SSS-----------------------------------------------S---------------
-----------------------------------------------------------------------SSS------
--S-----------------------------------------------------------------------------
--------------------S---S----------S------------S-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----SS-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------S----------S-----
----------S---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------S-----------------------------------
--------------------------S----S-------S----------------------------------------
-----------------------------------------SS-------------------------S-----------
---------------------------------------------------------S----------------------
-----------------------------------------------------------------------S--------
-----------------S-----------------------------------S--------------------------
---------S----S---------S-------------------------------------S-S---------------
--------------S--------------------SS-----S-------------------------------------
-S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------SS--S------------
-S--------------------------------------SSSS-------S---SS-------SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_333
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------GCGTGCG
GCATTACATACAG-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
>reverse_3456
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------ACTATCGCCCCAAAACAGCA---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
