>input_sequence_65633
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-------------------------------------------ATGCTAATATCTCCAGGACTCGCGGCGCCGGCGGCCT
CTCACCCGTCCCCTTTCCTCGCCGCCGCCTGCCTCGGCGACCGCGCTGCTCTAGGAGGCCTCGTCCAGCCGGCCGCAACG
ACGTCGAAGACCCGCTGCTA------------CAGCCGCCCGCTGCTCCGCTATGCGACCGCCGACGCCGCTTCTATTGC
GGGCAGCGTATCGACCAATGACACTCGGTGCCGCCTGGACCGCGACGAGCTCCGCAGGGTCTGCCAAGAGCCCGACCTCG
AGGGAGCAGTTAACCTGCTCGACGAAATGCTTACCCGGAGAGGCGGCGCCGGCGCGTCGGGCCAACCCGCGCCGGAAGAG
CAGGCCGCGGTCCTCCAGTGCTACGTTGACGCGCTCTCGCTGGCCTCCCTCAGACGAGGTCACCGCTTGCTCGCCAAGTC
CACGTCCCGGTACTCCGGGATCGCCATGCCCATCGTGCACAGGATCGCCACGCTGTACTGCAAGCTCGGCGCCCCTGCCG
ACGCGCGGCGCGTCCTTGAGGGAGCGTCGAGGCCGGCACCAGGAAAGCCCGCGGACGCGGCGCAGGCCAAGCGGAAGGAG
GCCTACGAGAAGGTGCGCGAGCTGCACGAGGAGATACGCGCGGCGGGGTACGTGCCGGACACCCGCTTCGTGCTGCACGA
CATCGACGAGGCCGCCAAAGAGCGCGCCCTCATGTACCACAGCGAGCGCCTGGCCATCGCGTTCGGGCTGGTGAGTACCC
CGCCCGGCACGCCGCTGCGGGTCATGAAGAACCTCCGCATCTGCGGGGACTGCCACACCGCCGTCAAGCTCATCGCCAAG
GTGACCGGCCGCGAGATCATCGTCAGGGACAACAAGCGGTTCCACCATTTCAAGGACGGCGCCTGCTCCTGCGGGGATTA
CTGGTGA-------------------------------------------------------------------------
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>chr5A_1_TraesCS5A01G403500
CAAGTTCGATGAGGTTAGAATTTTAAAGTTTTAAACATTCCATTGCTCCGACGTGGCTTTGTGACATGTGTGTCGTGTGA
TGGCCGAGCTGATCGCTAAGCAATGTTCACACCCATTACGATTAGATGGACATCATGCCACCGTCAACAATGAGGACAAG
AATGAGTAATACTTTTATCCCGTTGCAACGCATGGGTCATA-TGCTAGTGTAGGTTAAAACGACAAAACGTGCTATCGCA
CTTCAGACGAAATCACTGGTTAAGGAGCATTCCTCGCAAAAGTCACTCTCATCTTCTCATGTCGAGACAAATGATGCACT
GTATGTGCGTTGCTTGTCGCACC------------------TGAGAGGTTTTCCTTTTTTTCTAGATCTGTTTATTCCAA
AGATTTGATCTCTTAAATCGTGTGTCCAAATCTCGAATCGTTTTCACCATTGGATTCCTCGTGTTGACATA--------T
AGATTCCATGTTAATAGGTTTTGACG-ACTTTTTTTTCACAAAAAACTGAACCAGGAGCATATTTTTTTCATTTCTGAGA
GGCACG-----GCCTCTCACAAAAGCAAAATCATGCCTCTGACGG-----------------------------------
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-----------AAGAAAAAAAAACAAAATGCATTTTTTGCACATTTTTTTAATAATTTTGTCCAAAGGTTAAGATAGACC
GACGCAAAGCCGAAAAGCCGAA----------------------------------------------------------
-------------AAAACAAAAAAAAATCATGTAAAAAGCTGAAAAAACTGG----------------AAAAAAAATCCG
GATCAAGCGCCCGGGAGCGCGCGACACGTGGCGGCGGCTGAGAGCGTGCCA------------TCAGCTCACTTCAAATG
ACCCTTACGAAGTTCATGAGCGTT--------------------------------------------------------
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-------------------------------------------------------TCCCCTTCATAAG-CTAGAAAGGCC
CTTGTATCTATGGACTTAAACTTACCGGCTCAACACGAATTGAC-----------------ACACGAATTGCTGTCTCGT
CCGCAAGTGTGCCCTCGTCGTCCTCCCTCCGTCCATCGCACTCTGCGTGCGGTTACCCCTT-CTCCTTGGCGTACCA---
------------AGTTCCCCTGCCACTCGCGTCGCCGGCAGATATGCTAATATCTCCAGGACTCGCGGCGCCGGCGGCCT
CTCACCCGTCCCCTTTCCTCGCCGCCGCCTGCCTCGGCGACCGCGCTGCTCTAGGAGGCCTCGTCCAGCCGGCCGCAACG
ACGTCGAAGACCCGCTGCTA------------CAGCCGCCCGCTGCTCCGCTATGCGACCGCCGACGCCGCTTCTATTGC
GGGCAGCGTATCGACCAATGACACTCGGTGCCGCCTGGACCGCGACGAGCTCCGCAGGGTCTGCCAAGAGCCCGACCTCG
AGGGAGCAGTTAACCTGCTCGACGAAATGCTTACCCGGAGAGGCGGCGCCGGCGCGTCGGGCCAACCCGCGCCGGAAGAG
CAGGCCGCGGTCCTCCAGTGCTACGTTGACGCGCTCTCGCTGGCCTCCCTCAGACGAGGTCACCGCTTGCTCGCCAAGTC
CACGTCCCGGTACTCCGGGATCGCCATGCCCATCGTGCACAGGATCGCCACGCTGTACTGCAAGCTCGGCGCCCCTGCCG
ACGCGCGGCGCGTCCTTGAGGGAGCGTCGAGGCCGGCACCAGGAAAGCCCGCGGACGCGGCGCAGGCCAAGCGGAAGGAG
GCCTACGAGAAGGTGCGCGAGCTGCACGAGGAGATACGCGCGGCGGGGTACGTGCCGGACACCCGCTTCGTGCTGCACGA
CATCGACGAGGCCGCCAAAGAGCGCGCCCTCATGTACCACAGCGAGCGCCTGGCCATCGCGTTCGGGCTGGTGAGTACCC
CGCCCGGCACGCCGCTGCGGGTCATGAAGAACCTCCGCATCTGCGGGGACTGCCACACCGCCGTCAAGCTCATCGCCAAG
GTGACCGGCCGCGAGATCATCGTCAGGGACAACAAGCGGTTCCACCATTTCAAGGACGGCGCCTGCTCCTGCGGGGATTA
CTGGTGAGACGC-CTCCACCGCA----CCATTGACATCCATTTCTCTCTTACTGATTACTGGGTAATTCAGTGTCTCTAC
CAAGCCTGTAAATTTTGGCA--GGCTTTTGGCCTTGTGTAAGTGGAGAGAACAATGAAGCAATTTGTTTAGCCAACATGT
GACATGATGCATTACCCAGCAAGACGA-------------------CACTGCTACAACGAAATCTGATTGATCAAACATG
ATGAAGCTCACAATTCCTCCTAGGAAAACCCCTCGTATTTTCACAAATCGAAGCAAAGAATCAAGAGAACAAAACAGGGA
AGCTGATGAAAGCTATCATGTGCAGTGGGGAGGGAGGAGGTATCAGGGGCTCTGCTCAATCCGTGCCCGGCGAGGCCGCG
CCACCACGGACCGCGGCTGTGACTGGCAGACCTGCGCCGGGAACTTGCATCCGAACCTCTTGGTCACCATTGAGCCCCAC
CTGCCCTCCGCGGCCGGTGCCGCCGCCGCTCCTCTATCCC---CAGCAGCGCCGCCTCGGCGGTCTATCTTCTGGATGGC
TTTCCTCATGGTGGTGCACTCGCGCTCCAGCTCCTGCACCCGGTTCCGCATGCTGTCCATGTCCAGCCTGAGCATTTGGT
TCCCCCTCGTCGCCACTCGCCACGTCCGGCCACCGTCGCTCTCGCCTTCTTCCTCTCCTTGGCCTGCCGCACCGCCTTCA
TTCGCCACGATCGTCCGGGCGATGGCCCGACGCAGCTGGAGCTGCTCGAAGAAAAGCACCTGCACCACCGTCCGCAGGGG
CAGCCGCTCGTTCTGCGCCGCGTGCGTGCACGCTTCCAGCGTCAGCTTGCGCCCGTCCACCACGCCGCTCACCTTCTCCT
TCTCCTCCTCCCTCAGCGCTGGATGTGCCTGCACAAAGAACGGCGGCGGCGGCTTCTGAGCACCGGCATTGAGCCGCAAG
CATCGATCAAGATGGCATTCAGAATGTGTTCGGCAGAAACCTTGATGTAGATGTCGACGGCACGGTAAAGGCCATC
>chr5D_173
TTTTCTC-------------------------------------------------------------------------
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------------------CCCGTTGCAACGCACGGGCATATGTGCTAGTGTAGGTTAAAACGACAAAACGTGCTATCGCG
CTTCAGACGAAATCACTAATTAAGAAGCACTTGTTGCAAAAGCCACTACCATCTGCTCAGGCTATGACAAATGCCGCACT
GTATATGCGTAGCTTGTCACAAAAAAATGCTTGTCGCAACTTGAGAGGTTTTTTCTTTTTTCTAGATCCGTTTATTTAAA
ATATTTTATCTCTTAAATCGTGTCTCCAAACCTCGAACCGTTTTTACCGTTGGATTCCTCGTGTTGACATCTTCAAAACT
AGATCTCATGTTGATAGGTTTTGACAAACATTTTTTTCACAAAAAATCAAATCGGGAGCACCTTTTTCCTTTCCGAAAGA
GGCACGACTTTGCCTCTCGCGGAAGCAAATTCATGCCTCCACGAGAAGTAAACCCGTGCCTATTGCGAAAGGAAAAAAAG
AAACGTGTTTGTCTCGTTTCGAGAGGCACGCCCATGCCTGCCTCTCGCGAAAGGTTAAAAAATGCGTTTTTTCCTTTTTC
AAGAGGCACGGTCGTGCCTGCCTCTCACGGAAGGTAAAAATTTGAGTTTTTTTCTTTTTCGAGAGGCGAGCCCATGCCTG
CTTCTCGCAGAAGGAAAATAAAAGAAAATGCGTTTTCCCCTTTTTTGAGAGGTACAACCACGTCTTTTTTTCTTCCGCGA
AAAGCAAGGTTTTGCTTCAGCGAGTTTTTGCTTCCGTGATAGACATGGCATATCCTTGCCTGTTGCGAAGTAAAACCGTG
TCTCTCGCGGATGAAAACAAAACAAAATCATGTAAAAAGCTGAAAACGCGTGCGGAAAAATAAAAATAAAATAAAATCCA
GACGAAGCGCCCAAGAGCGCGATACTTCAT--GGCGGCTGACAGCGCGCCAAGTGACACGCTCTCAGCCCACTTCAAATG
ACCCTTGAAAGGCTCCTTTTTTTTAGTGGTACCCTTGGAAGGGCGAATCCTATATGACGCGCGCCGGCGTCATAGAGGCG
AGGCTTCGCTGAAGGCGTCCCCCCCAAACCCCAGTTTGGGCCGGCCCACGGTGGGCTTCACTCTTTCTTTCTCTTTTATG
CTTCTTTTCTTCTTCTTTTCCTGTTTCCTTTTTACTTTATTTTATTTCCCTTTTTATTTTCTTTTTTCTTTTTTCGTGTG
TTATACATACTTTATGTCTATTACAAATGTTCATTGTATACTAAGAAAATGTTAATGGTATATTACAAAAAGGTTCACCA
TGCATTATAAATATGTCCATCGTATTTTCAGAATTTTTTCGACGAATACTACAAATGTTTACTTTGTATTTAAATTTTTT
AGGGCATATTACACAAAATCAATGTGTATTGAAAAATTGTTCAATGTACATTACACAAATGTTCAATGCATATTCGAAAA
TTGTTCAACGTACATTATAAAATGTTCAATGCATATTCGAATTTTTCAGCGTATATATTCGTATGTTCAAAATATTCGAA
AATAAAAACCGAGCTTCAAAACGCGGCGCTACAGTGAACCGGATGGTACAGTACCGTCCCGAAACTGTGTTCCAGCATTT
ACATTTTTTTTATTTGAACTGCAAATGGGCTGGCCCAGTTGGATGGACCCTGTGCGAAGCCAGGGTTTCTTGACGCACAC
GGGCGTCCGACAGGGACTCTCCCTTGGAAGGCAGCGCTTCTCAATTAGTTTGCTCTCCCCTTCAGAAGACTAGAAAGGCC
CCTGTATCTATGGGCTTAGACTTACCGGCCCAACACGAATTGATGTGTGATTTAAAAAAAAACACGAATTGACGTCTTGT
CCGCAACTGTGACCTCGTCGTCGACTCGTCCTCCCTCGCACTCTGCGTGTGGTTACCCCTTTCTCCTTCGCGTACCAGAC
AGACACTCGCTGAGTTCCCCTGCCACTCGCGTCGCCGGCAGATATGCTAATATCTCCAGGACTCGCGGCACCGGCGGCGT
CTCACCCGTCCCATTTCCTCACCGCCGCCAGCCTCGGCGACCGCGCTACTCTAGGCGGCCTCGTTCAACCGGCCGCAACG
ACGTCGAAGACCCGCTGCTACAGCCGCAGTCGCAGCCGCCCGCTGCTCCGCTGTGCGACCGCCGACGCCACTTCTGTTGC
GGGCAGCGTATCGACCAGTGACACTCAGTGCGGCCTGGACCGCGACGAGCTCCGCGGGGTCTGCCAAGAGCCCGACCTCG
AGGGAGCAGTCAACCTGCTCGACGAAATGCTTCGCCGGAGGGGAGGCAACGGCTCGTCGGGCCAACTCGCGCCGGAAGAG
CAGGCAGCGGTCCTCCAGTGCTACGTCGACGCGCTCTCGCTGGCCTCCCTCAGACGAGGCCACCGCCTGCTCTCCAAGTC
CACGTCCCGGTACTCCGGGATCGCCGCGCCCATCGTGCACAGGATCGCCACGCTGTACTGCAAGCTCGGCGCCCCCGCCG
ACGCGCGCCGCGTCCTCGAGGGAGCGTCGAGGCCGGCGCCGGGGAAGCCCGCGGACGCGGCGCAGGCCAAGCGGAAGGAG
GCCTACGAGAAGGTTCGCGAGCTGCACGAGGAAATACGCGCGGCGGGGTACGTGCCGGACACCCGCTTCGTGCTGCACGA
CATCGACGAGGCCGCCAAGGAGCGCGCGCTCATGTACCACAGCGAGCGCCTGGCCATCGCCTTCGGGCTGGTGAGCACGC
CGCCCGGCACGCCGCTGCGGGTCATGAAGAACCTCCGCATCTGCGGGGACTGCCACAGCGCCGTCAAGCTCATCGCCAAG
GTGACCGGCCGCGAGATCATCGTCAGGGACAACAAGCGGTTCCACCATTTCAAGGACGGCGGCTGCTCCTGCGGGGATTA
CTGGTGAGACGC-CTCCACCACAACTGCCATTGGCATCCATTCCTATCTTAGCC---------TAGTTCAGTGTCTCGAG
CATGCCTGTAAATTTTGGCAAAGGGTTTTGGTCTTGTGTAAGTGGAGAGAACAATGAAGCAATTTGTTTAGCCAACATGT
GACATGATGCATTACCCAGCAAGATGACACTGATCGAAAGATTGTGCACTGCTACAACGAAATCTGATTGATCAAACATG
ATGAAGCTCACAATTCCTCCTAGGAAAACCCCTCGTATTTCCACAAATCGAAGCAAAGAATCAAGAGAACAAAACAAGGA
AGCTGATGAAAGCTATCATGTGCAGTGGGGAGGGAGGAGGTATCAGGGGCTCTGCTCAATCCGTGCCCGGCGAGGCCGCG
CCACCACGGACCGCGGCTGTGACTGGCAGACCTGCGCCGGGAACTTGCATCCGAACCTCTTGGTCACCATTGAGCCCCAC
CTGCCCTCCGCGGCCGGTGCCGCCGC---TCCTCTGTCCC---CGGCGGCGCCGCCTCGGCGGTCTATCTTCTGGATGGC
TTTCCTCATGGTGGTGCACTCGCGCTCCAGCTCCTGCACCCGGTTCCGCATGCTGTCCATGTCCAGCCTGAGCATTTGGT
TCCCCCTCGTCGCCACCCGCCATGTCCGGCCGCCATCACTGTCGCCGTCTTCCTCTCCTTGGCCTGCCGCACCGCCTTCA
TTCGCCACGATCGTCCGCGCGATGGCCCGGCGCAGCTGGAGCTGCTCGAAGAAGAGCACCTGCACCACCGTCCGCAGCGG
CAGCCGTTCGTTCTGCGCCGCGTGCGTGCACGCCTCTAGCGTCAGCTTGCGCCCGTCCACCACGCCGCTCACCTTCTCCT
TCTCCTCCTCCCTCAGCGCTGGATGTGCCTGCACAAAGAACGGCGGCGGCGGCTTGTGAGCACCGGCATTGCGCTGCAAG
CATCGATCAAGATGGCATTCAGAATGTGTTCGGCAGAAACCTTGATGTAGATGTCGACGGCACGGTAAAGGCCGTC
>chr5B_970
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------------AGTTCCGCTGCCACTCGCGTCGCCGGCAGATATGCTAATATCTCCAGGACTCGCGGCACCGGCGGCGT
CTCACCCGCCCCCTTTCCTCACCGCCGCCAGCCTCGGCGACCGCGCTACTCTAGGCGGCCTCGTTCAACCGGCCGCAACG
ACGTCGAAGACCCGCTGTTACATCCGCAGTCGCAGCCGCCCGCTGCTCCGCTATGCGACCGCCGACGCCGCTTCTATCGT
GGGCAGCGTATCGACCAATGACACTCAGTGCCGCCTGGACCGCGACGAGCTCCGCAGGGTCTGCCAAGAGCCCGACCTCG
AGGGAGCAGTCAACCTGCTCGACGAAATGCTTCGCCGGAGAAGCGGCGCCGGTGCGCCGGGCCAACTCGCGCCGGAAGAG
CAGGCCGCGGTACTCCAGTGCTACGTCGACGCGCTCTCGCTGGCCTCCCTCAGACGAGGCCACCGGCTGCTCGCCAAGTC
CACGTCCCGGTACTCCGGGATCGCCACGCCCATCGTGCACAGGATCGCCACGCTGTACTGCAAGCTCGGCGCCCCCGCCG
ACGCGCGCCGGGTCCTCGAGGGTCCGTCGAGGCCGGCACCAGGAAAGCCCGCGGACGCGGCACAGGCCAAGCGGAAGGAG
GCGTACGAGAAGGTGCGCGAGCTGCACGAGCAAATACGCGCGGCGGGGTACGTGCCGGACACCCGCTTCGTGCTGCACGA
CATCGACGAGGCCGCCAAGGAGCGCGCGCTCATGTACCACAGCGAGCGCCTGGCCATCGCGTTCGGGCTGGTGAGCACGC
CGCCCGGCACGCCGCTGCGGGTCATGAAGAACCTCCGCATCTGCGGGGACTGCCACAGCGCCGTCAAGCTCATCGCCAAG
GTTACCGGCCGCGAGATCATCGTCAGGGACAACAAGCGGTTCCACCATTTCAAGGACGGCGCCTGCTCCTGCGGGGACTA
CTGGTGAGACAGTCTCCACCACAACTGCCATTGGCATCCATTCCTCTCTTAGCCTAT--------GTTCAGTGTCTCGAC
CATGCCTGTAAATTTTGGCAAAGGGTTTTGGTCTTGTGTAAGTGGGGAGAACAATGAAGCATTTTGTTTAGCCAACATAT
GACATGATGCATTAGCCAGCTATAGATGACACATCGAGCGATTGTGCACTGCTACAACGAAATCTGATTGATCAAACATG
ATGAAGCTCACAATTCCTCCTAGGAAAACCCCTCGTATTTTCACAAAGCGAAGCAAAGAATCAAGAGAACAAAACAAGGA
AGCTGGTGAAAGCTATCATGTGCAGCGGGGAGGGAGGAGGTATCAGGGGCTCTGCTCAATCCGTGCCCGGCGAGGCCGCG
CCACCACGGACCGCGGCTGTGACTGGCACACCTGCGCCGGGAACTTGCATCCGAACCTCTTGGTCACCATTGAGCCCCAC
CTGCCCTCCGCGGCCGGTGCCGCCGC---TCCCTTATCCCCAGCGGCGCCGCCGCCTCGGCGGTCTATCTTCTGGATGGC
TTTCCTCATGGTGGTGCACTCGCGCTCCAGCTCCTGCACCCGGTTGCGCATGCTGTCCATGTCCAGCCTCAGCATTTGGT
TCCCCCTCGTCGCCACCCGCCACGTCCGGCCGCCATCGCTGTCGCCGTCTTCCTCTCCTTGGCCCGCCGCACCGCCTTCA
TTCGCCACGATCGTCCGCGCGATGGCCCGGCGCAGCTGGAGCTGCTCGAAGAAGAGCACCTGCACCACCGTCCGCAGCGG
CAGCCGTTCGTTCTGCGCCGCGTGCGTGCACGCCTCTAGCGTCAGCTTACGCCCGTCCACCACGCCGCTCACCTTCTCCT
TCTCCTCCTCCCTCAGCGCTGGATGTGCCTGCACAAAGAACGGCGACGGTGGCTTGTGAGCACCGGCATTGCGCTGCAAG
CATCGATCAAGATGGCATTCAGAATGTGTTCGGCAGAAACCTTGATGTAGATGTCGACGGCACGGTAAAGGCCGTC
>SNPs
SSSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS--------------S---SSSSS--------------------------------------S
-----------------SS-----S----S-SS-S-------S----SS-----S----S-SSSS--------SS-----
----S-----S-------S--SS-----------------------------SSS-------------S-------SS--
-S----S----------------S------S------S------S---S---------------------S---------
----SS------S------------S---S----------------SSS--S-S------SS-----SSSS-SSSSS---
------------------S-SS-------S---------SSSSS------------------------------------
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------------S-----S----S-------S----SSS-SSS---SSSSSS--SSSSSSSSSSSSSS--SSSSSS-SSS
S-S----S-SSSSSSSS-S-SS----------------------------------------------------------
----------------------S-----------------------SS-SS--------------------S-------S
--SS--------SS-------SS--SSSSSSS---------S----S---------------------S-----------
------SSS-S-S--S-SSSSS----------------------------------------------------------
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----------------------------------------------------------------S---------------
-S-----------S----S----------S-------------S---------------------------SS----S--
------S----S----------SS-S-SS-S---S--------------S------------------S-----------
---------------------------------------------------------------------S--------S-
--------------------S--------S-----------------S-------S--------S--S------------
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--------------------------S-----------------------------------------------------
----------S---------------------SS--------------------------------S-------------
--------------------------S--------------------------------S------S-------------
--------------------------S------------------------------------------------S----
-------S--------S---------------------------------------------------------------
--------------------------------S-----------------------------------------------
------------------S--------S-----------------------------------------------S--S-
---------------------------------------------------------S----------------------
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--------------------S------------S--------S--------SSSSS-SSSSSS--S-----------S--
--S---------------------S------S------------------------------------------------
------------------------S-------------------------------------------------------
----------------------------------------------------------------------------S---
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--------------------------SSS---------------S--S--------------------------------
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----------------S--------------S--S-----S-----S---------------------------------
-----------------S-----------S-----------------------S-----------------------S--
------S--------------------------S--S-------------------------------------------
-------------------------------------------------------S---------------S--S-----
-------------------------------------------------------------------------S--
>forward_54
----------------------------------ACATTCCATTGCTCCGACGT--------------------------
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>reverse_2828
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---------------------------CCTCATGTACCACAGCGAGC---------------------------------
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>forward_68
------------------------------------------------CGACGTGGCTTTGTGACATG------------
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>reverse_3145
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------------------------CTTTTGGCCTTGTGTAAGTGGA----------------------------------
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