>input_sequence_65628
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------ATGGCCACTTTCTTGGGAAGCTCCCCGGCCTTCCTCGCCCGCCCCGCCGCCAAGCCGCACGTCTCGTGCGCGCC
GCCCTCGCGCCCGCCCAGCGCCCAGCCGCCGTCCGACCAGCCCCCACCGCCACCACAGCAGCAGCAGCAGCAAGAGCCCA
TGCAGGCGCAGGCGGCACCGGCGAGGGCGCCGGCGCCCAAGCGCGCGGCGACGACGTCGGCCGACTCGACGGACTGGGTC
GCGTCGTCGCTGACCCGGCGGTTCGGCATCGGCGCCGGGCTGGCGTGGGTCGGCTTCCTGGCCTTCGGCGTCGTGTCGGA
GCAGCTCAAGACCCGCCTCGAGGTCGCGCAGCAGCAGGCCAACACCAAGTCAGCCGCCGACCTCGGCCCCTCACCTCCAT
TAATAACCATCCTCCATG---CTCTCGTCACCCAT------------GTGTGTCTCCTTCTCGCAGGGATGTGGAGGAGG
AGCAGGAGGTCGTCCTGCCCAACGGAATCCGGTAAGCTCA------------------------TTCTTGGGTAGCACCG
GAGTGAAACCTCACACTGACGGCGACAATGGTTCAGGTACACCGAGATGCGGGTGGGCGGCGGCGACGTGCCGCGGCCGG
GCGACCTGGTGGTGATCGACCTGCAGGGGCGGGTGGCCGGCGGCGGCGGCGAGGCGTTCGTGGACACGTTCGGCGACGGG
AAGCGGCCGCTGGCGCTCGTCATGGGCTCCAGGCCCTACACCAGGGGGATGTGCGAGGGCATCGAGTACGCGCTGCGGTC
CATGCGGAACGGCGGCAAGCGGCGCGTGGTCGTCCCGGCGAGCCTGGGCTTCGGCGAGGACGGCGCCGATTTCGGGGACG
ATGGCGCGCAGGTGCCCCCCGGGGCGACGCTCGAGTACGTCGTGCAGGTCGACAAGGTGTCCATCGCGCCGGCGTGA---
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>chr4B_1_TraesCS4B01G043700
AATCCACATTGACATGTGGATGAATACTACACATGTGTAAAAATTCATGAGAAAATACATTGATTCATGAGCTAGACAAA
ATAGTGGCTATCGTTGGTTTTATATACTCCCTCCTCTCCAAAATCTTAGGCGTCTAAGCGTTTTAAAAAAAAATCAATAT
CTAAGGCATGTTAGCACTCAACTCCCGATATTCTCTCTTGCACAGAGAGTGTAAGCTAACCATCGCTAATTTTGGATCAG
GCAACCATGTTTGTTAAAGGATATCTCGGAGGAAACTTTCTGTAACTATGGCTCAGTAATTTGCAACCAGAGTTGCGTTA
TTTTCCGTGCCAAAAGCTTCCACGCCCTACGTAATGGGAAGGAGGGAGTAGTAAAGAGTACACATACTGTTCACGTCACT
GTTTTCATTCTCAGCAATTTATCTTTTTGTGTAGCTCTCGTGTCAATGCATTTCATCACGAAAATTTGTGAGTATGCCGT
GTGCATCCATATGATAATGTGGATTTTTTTCTCTTAATTTTTAAAGCATTGAAACATTTATTTTGATTTTTTCAGAAAAA
AACGAGCTCCAAAACGAATTTCTGGGCCACGCCTGAGCCCCAGGCCCAGTTTCGCCCCTGATCTCGTGTCAATGCATTTC
ATCATGAAAATTTGTGAGTACGCCGTGTGCATCCATATGATAATGTGGATCTTTTTTTCTTCTCTGAATTTTGAAAGCAT
TGAAACATTTATTTTGATTTTTTTCAGAAAAACGAGCTCCAAAACATATTTCTGTAGCAAGGAGATAATCGGATAAGCCT
CTCGAGCTGCCAAAAAAATCGGATAAGCCGGCGCGCGTGTGTGTGGCCACATTTCGGTCCAAGAAACCGCAGAAAAGCAC
A--GCCAAAAAAATCTCAAAAACG-TAGCG----------AACAAAAAGTTTAGCCAAATAATATCCGGTTCCATCCTCC
TTCCAGCTGCTCTGCTCTGCTCACCGTACGA---------------------------------ATCGTGCCGGTGTCCG
CCCGCCATGGCCACTTTCTTGGGAAGCTCCCCGGCCTTCCTCGCCCGCCCCGCCGCCAAGCCGCACGTCTCGTGCGCGCC
GCCCTCGCGCCCGCCCAGCGCCCAGCCGCCGTCCGACCAGCCCCCACCGCCACCACAGCAGCAGCAGCAGCAAGAGCCCA
TGCAGGCGCAGGCGGCACCGGCGAGGGCGCCGGCGCCCAAGCGCGCGGCGACGACGTCGGCCGACTCGACGGACTGGGTC
GCGTCGTCGCTGACCCGGCGGTTCGGCATCGGCGCCGGGCTGGCGTGGGTCGGCTTCCTGGCCTTCGGCGTCGTGTCGGA
GCAGCTCAAGACCCGCCTCGAGGTCGCGCAGCAGCAGGCCAACACCAAGTCAGCCGCCGACCTCGGCCCCTCACCTCCAT
TAATAACCATCCTCCATG---CTCTCGTCACCCAT------------GTGTGTCTCCTTCTCGCAGGGATGTGGAGGAGG
AGCAGGAGGTCGTCCTGCCCAACGGAATCCGGTAAGCTCA------------------------TTCTTGGGTAGCACCG
GAGTGAAACCTCACACTGACGGCGACAATGGTTCAGGTACACCGAGATGCGGGTGGGCGGCGGCGACGTGCCGCGGCCGG
GCGACCTGGTGGTGATCGACCTGCAGGGGCGGGTGGCCGGCGGCGGCGGCGAGGCGTTCGTGGACACGTTCGGCGACGGG
AAGCGGCCGCTGGCGCTCGTCATGGGCTCCAGGCCCTACACCAGGGGGATGTGCGAGGGCATCGAGTACGCGCTGCGGTC
CATGCGGAACGGCGGCAAGCGGCGCGTGGTCGTCCCGGCGAGCCTGGGCTTCGGCGAGGACGGCGCCGATTTCGGGGACG
ATGGCGCGCAGGTGCCCCCCGGGGCGACGCTCGAGTACGTCGTGCAGGTCGACAAGGTGTCCATCGCGCCGGCGTGAGGC
CCTCCG-----GCGAGCCGGACGTCAGTAGATAGATGATCCGCATATGCTGTTTCAGTTTGTGTTGGACAACGCCCCGTG
CAGATTCTGTTGCCATGCCAAAGTTCTCTCCGAGCTCAAGAAGCTAATCCTTCTTGCTGTAATCTGAATCCTGATAAATA
TGAACTCATGCAAGCTTCACAAACCATCGAAGCCCGTTTAG-AAATAG----AAATTTTAAATGGAGTTCGTGACAAAGA
GTAAAATTCCCATAGAAACTAGAGAAAAATTCAGACTTTGGGT---------------------ACAACATAAAATCAAA
CTTTTCCACTATTAACACAAGTACACAATATCCCTATTAAAGACAAGTACACAATCTATGCTT-TGAACATCCCGTGAGA
TAGATACATATGGACAAACTTCACCGTAAACCCTTGAAATCAATGGCAAAAGAATCACCCATCCAGAATAAAAGCGGTAC
ATTACATGTATAATCACTTGTGATCAGAAGAACAATGCACATTCGGCACTCAGCTGACGGGGTCGCGTTCCGGTCCGGGG
TTGTAGAGGGGCAGCTCCAGGAGGAATGCCACCTTGAACCAATCGGGCAGGGCTCCATACACGACCGGCGGCAATGGGAT
AAGGGGGCTGCAGAGGAACACAACCGGTACAAACTTCAGTAACCCCTCTGCGACAAAGCAGTGGTTGGGGAGAGATCTAG
TAATGACCTAGTAAAAGAATGGTGCTTACCTTGTGGTTTTCTTGTATGTGCGGTATTCCTCAGACCGACCGAAGCGCTTA
TCAGCAGATGACTTCACGGCGAAATAAAGATGATGAGGTGCATTAGCATTGAGATAAAAGATATACTAGCAAACTAGGGA
TGGGTTTCGGATGCGCAAGAATAGAGGTTAACCTCAAGAAGTGGGATCCCGCTAACGAAAAGAAGCAAGAGCGTCAGGAA
GATGGGTCCCAAGATTACAAGCCATTCAGCTCCTGAGAGGACCGGGGTTGATGCTACAAACACCCCCCA
>chr4A_775
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------------------------------------------------------TAGCAACGAGATAACCGGATAAGCCT
CTCGAGCTGCCCAGTCCAGTCGCCGGCGT-------GTGTTTGTGGCCACGTTTCCGTCCACGAAACCGCCGAAAAG--C
A--GCCAAAGAAATCTCAAAAACA-TAGAGAAAGCAAAGCAACGAAAAGGTTAGCCAAACA---TCCGGTTCCA---TCC
TCCCAGCTGCTCTGCTCTGCTCGCCGTACGGTCTCGCCCATCACACACACAAGCAAACGTGCCCATCGCGCCGGT----G
CCCGCCATGGCCACGTTCTTGGGCAGCTCCCCGGCCTTCCTCGCCCGCCCCGCCGCCAAGCCGCACGTCTCGTGCTCGCC
GCCCTCGCGCCCGCCCAGCGCCCAGCCGCCGTCCGACCAGCCCCCACCGCCGCCA------CAGCAGCAGCAAGAGCCCA
TGCAGGCGCAGGCGGCACCGGCGAGGGCGCCGGCGCCGAAGCGCGCGGCGA---CGTCGGCCGACTCGACGGACTGGGTC
GCGTCGTCGCTGACGCGGCGGTTCGGCATCGGCGCCGGGCTGGCGTGGGTCGGGTTCCTGGCCTTCGGCGTCGTGTCGGA
GCAGCTCAAGACCCGCTTCGAGGTCGCGCAGCAGGAGGCCAATACCAAGTCAGCCACCGACCTCGACCCCTCACCTCCAT
TAATCAACATCCTCCATG---CTCTCGTTAGCTAAGCCACCCATGTCGTGTGTCTCGTTCTCGCAGGGATGTGGAGGAGG
AGCAGGAGGTCGTCCTGCCCAATGGAATCCGGTAAGCATGCGTGCATGGCACCAGCTAGGTACGTTCTTGGGTAGCTCCT
CTGAGCAGCAG--------------CAATGGTGCAGGTACACCGAGATGCGGGTGGGCGGCGGCGACGTGCCGCGGCCGG
GCGACCTGGTGGTGATCGACCTGCAGGGGCGGGTGGCCGGCGGCGGG---GAGGCGTTCGTGGACACGTTCGGCGACGGG
AAGCGGCCGCTGGCGCTCGTCATGGGCTCCAGGCCCTACACCAGGGGGATGTGCGAGGGCATCGAGTACGCGCTGCGGTC
CATGCGGAACGGCGGCAAGCGGCGGGTGGTCGTTCCGGCGAGCCTGGGCTTCGGCGAGGACGGCGCCGACTTCGGCGACG
ACGGTGCGCAGGTGCCTCCCGGCGCGACGCTGGAGTACGTCGTGCAGGTCGACAAGGTGTCCATCGCGCCGGCGTGAGGC
T-----CTCCGGCGTGCCGGACGTCAGTAGATAGATGATCGACATATGCTGTTTCAGATTGTGTTGGACAGCACTGCGTG
CAGATTCTATTGCCATGTCAAAGTTCTCTCAGAGCTTAAGAAGCTAATCCTTCTTGCTGTAATCTGAATCCTGATAAATA
TGAACTCATGCAAGCTTCACAAACCATCGAAGCCCGTTTTGAAATTAG----AAATTTCAAACGGAGTTCGTGGCAAAGA
GTAAAATTCCCATAGAAACTAGAGAAAA-TTCAGACTTTCATACAGGATTTGGTACAAGAGGGCACAAAATAAAACCAAA
GTTTTCCACTATTAACACAAGTACACAATATCCCTATTAAAGACAAGTACAAAAACTATGCTTTTGAACATCCTGGGAGA
TAGATACATATGGACAAACTTCACTATAACCCCTTGAAATCAATGGGAAAAGAATCACCCATCCAGAATAAAAGCAGTAC
ATTACATGTATAATCACTTGTGATCAGAAGAACAATGCACATTCATCACTCAGCTGACAGGGTCGCGTTCCGGTCCTGGG
TTGTAGAGGGGCAGCTCCAGGAGGAATGCCACCTTGAACCAATCGGGCAGGGCTCCATACACAACCGGCGGCAATGGGAT
AAGAGGACTGCAGAGGAACACAGCCGGTACAAACTTCAGTAACCCCTCTGCGACAAAGCAGTGGTTGGGGAGAGATCTGG
GAATGACCTAGTAAAAGAATGGTGTTTACCTTGTGGTTTTCTTGTATGTGCGGTATTCCTCAGACCGACCGAAGCGCTTA
TCAGCAGATGACTGCACAGCGAAATTTAGAGGATGAGGTGCATTAGCACTCAGAGGAAAGATAC---AGCAAACTAGGGA
TGGGTTTCGGATGCGCAAGAATAGAGTTTAACCTCAAGAAGTGGGATCCCGCTAACGAAAAGAAGCAAGAGCGTCAGGAA
GATGGGTCCCAAGATTACAAGCCATTCAGCTCCTGAGAGAACCGGTGCTGATGCTACAAACACCCCCCA
>chr4D_780
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-----------------------------------------------------------AGGAGATAATCGGATAAGCCT
CTCGAGCTGTCCAGTCCAGTCGCCA---------GCGTGTGTGTGGCCACGTTTCCGTCCAAGAAACCGCCCAAAAG--C
ACGGCCAAAAAAATCTCAAAAAACGTAGAGAAATCAGAGCAACAAAAAGTTTAGCCAAATA---CCCGGTTCCATCCTCC
TCCCAGCTGCTCCGCTCTCCACACCGTACGA---------------------------------ATCGTGCCGGT----G
CCCGCCATGGCCACTTTCTTGGGCAGCTCCCCGGCCTTCCTCGCCCGCCCCGCCGCCAAGCCGCACGTCTCGTGCGCGCC
GCCCTCGCGCCCGCCCAGCGCCCAGCCGCCGTCCGACCAGCCCCCACCGCCGCCA------CAGCAGC---AAGAGCCCA
TGCAGGCGCAGGCGGCACCGGCGAGGGCGCCGGCGCCGAAGCGCGCGGCGA---CGTCGGCCGACTCGACGGACTGGGTC
GCGTCGTCGCTGACGCGGCGGTTCGGCATCGGCGCCGGGCTGGCGTGGGTCGGGTTCCTGGCCTTCGGCGTCGTGTCGGA
GCAGCTCAAGACCCGCTTCGAGGTCGCGCAGCAGCAGGCCAACACCAAGTCAGCCACCGACCTCGGCTCCTCACCTCCAT
TAATAACCATCCTCCATGCTCCTCTCGTTAGCTAAGCCACGCATG--GTGTGTCTCCTTCTCGCAGGGACGTGGAGGAGG
AGAAGGAGGTCGTCCTGCCCAATGGAATCCGGTACACG------------------------------------------
-------------------------------------------GAGATGCGGGTGGGCGGCGGCGACGTGCCGCGGCCGG
GCGACCTGGTGGTGATCGACCTGCAGGGGCGGGTGGCCGGCGG---CGGCGAGGCGTTCGTGGACACGTTCGGCGACGGG
AAGCGGCCGCTGGCGCTCGTCATGGGCTCCAGGCCCTACACCAGGGGCATGTGCGAGGGCATCGAGTACGCGCTGCGGTC
CATGCGGAACGGCGGCAAGCGGCGCGTGGTCGTACCGGCGAGCCTCGGCTTCGGCGAGGACGGCGCCGACTTCGGGGACG
ACGGCGCGCAGGTGCCCCCCGGGGCGACCCTGGAGTACGTCGTGCAGGTCGACAAGGTGTCCATCGCGCCGGCGTGAGGC
CCTCCGCTCCGGTGTGCCGGACGTCAGTAGATAGATGATCAACATATGCTGTTTCAGTTTGCGTTGGACAACACTTCGTG
CAGATTCTGTTGCCATGTCAAAATTCTCTCAGAGCTTAAGAAGCTATTCCTTCTTGCTGTAATCTGAATCCTGATGAATA
TGAACTCATGCAAGCTTCACAAACCATCGAAGCCCATTAAGAGATAGATAGAAAAAATTTAACGGAGTTCGTGG-AAAGA
GTAAAATTCC-ATGGAAACTAGAGAAAA-TTCAGACTTTCATACAGGATTTGGTACAAGAGGGCACAAAATAAAATCAAA
CTTTTCCACTATTAACACAAGTACACAATATCCCTATTAAAGACAAGTACACAATCTATGCTTTTGAACATCCTGGAAGA
TAGATACATATGGACAAACTTCACCGCAACCCCTTGAGATCAATGGCAAAAGAATCACCCATCCAGAATAAAAGCAGTAC
ATTACATGTATAATCACTTGTGATCAGAAGAACAATGCACATTCATCACTCAGCTGACGGGGTCGCGTTCCGGTCCGGGG
TTGTAGAGGGGCAGCTCCAGGAGGAATGCCACCTTGAACCAATCGGGCAGGGCTCCATACACGACCGGCGGCAATGGGAT
AAGAGGGCTGCAGAGGAACACAGCCGGTACGAAATTCAGTAACCCCTCTGCGACAAAGCAGTGGTTGGGGAGAGATCTGG
GAATGGCCTTGTAAAAGAATGGTGCTTACCTTGTGGTTTTCTTGTATGTGCGGTATTCCTCAGACCGACCAAAGCGCTTA
TCAGCAGATGACTTCACGGCGAAATATAGAGGATGAGGTGCATTAGCATTGAGATAAAAGATATACTAGCAAACTAGGGA
TGGGTTTCGGATGCGCAAGAATAGAGGTTAACCTCAAGAAGTGGGATCCCACTAACGAAAAGAAGCAAGAGCGTCAGGAA
GATGGGCCCCAAGATTACAAGCCATTCAGCTCCTGAGAGAACCGGGGTTGATGCTACAAACACCCCCCA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------
-----------S-SSSS-SSS-SS-SSSSSSSSS----------------S----S--------------S------SS-
-----------------------S----S--------------------------------SSS----------------
-S-------------------------------------------------------------------------SSSS-
-----------------------S--------------------------------------------------------
---------------------------------------------------S---SSSSSS-------------------
-------------------------------------S-------------SSS--------------------------
--------------S--------------------------------------S--------------------------
----------------S--------------------------------------S------------------------
----------------------------S-S-S-S---------------------------------------------
----------------------S--------------SSS------------------------------------S--S
SS-S-S-S-SSSSSSSSSSSSSSSS-------S-----------------------------------------------
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---------------------------------S-----------------------------------S----------
-S-----------------------------S------------------------------------------------
--------------S-------------------------SS------------------------------S-SS----
-----------------S------------S-----S-------------------------------------------
--------------------------------------------S-----------------S----------S------
----------------------------S----------SSSS-------------------------S-----------
-------------------------------------------------------------------------S-S----
-----------------------------S---------------------------------------------S----
--------------------------------------------SS----------------------------------
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---S------------------S-------------------------------------------------------S-
S-------------------------------------------------------------------------------
--------------------------S---S-------------------------------------------------
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---------------------------------------S-----------------------------
>forward_633
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-----------------------------------------------------GCCCCTGATCTCGTGTCAAT-------
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>reverse_1558
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-------------------------------------TCATTCTTGGGTAGCACCGG-----------------------
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>forward_1469
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---------CCATCCTCCATGCTCTCGTC---------------------------------------------------
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>reverse_3000
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---------------------------------------GACCGGGGTTGATGCTACAA----------
