>input_sequence_65621
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-----------------------------------------------------------------------------ATG
ACGGCGGGTCAGCCCCTCCGCGCCGATCCCCAGCAGCGCCGCCACAGCCCGCCGGCCCTCCACCCCGCCCTCGTGCCGTC
CTACCCGCCCCCGGAGTCCGACAACGACGAGTCCTGGGTCTGGTCCCAGATCAAGGCCGAGGCGCGCCGCGACGCCGACG
CCGAGCCGGCGCTCGCCTCCTTCCTCTACGCCACCGTGCTCTCCCACCCGTCCCTCGAGCGCTCCCTCTCCTTCCACCTC
GCCAACAAGCTCTGCTCCTCCACCCTCCTCTCCACGCTCCTCTACGACCTCTTCGTCGGCTCCCTCGCCGCGCACCCCAC
CATCCGCGCCGCCGCCGTCGCCGACCTCCTTGCCGTGCGCTCCCGGGACCCCGCCTGCGCCGGCTTCTCCCACTGCCTCC
TCAACTACAAGGGCTTCCTCGCCGTCCAGGCCCACCGCGTCGCGCACGTGCTCTGGGCGCAGAACCGCCGCGCCCTCGCG
CTCGCGCTCCAGTCCCGGGTCGCCGAGGTCTTCGCCGTCGACATCCACCCGGCCGCCGCCATCGGCAAGGGCGTCCTCCT
GGACCACGCCACCGGCGTCGTCATCGGCGAGACGGCCGTCGTCGGCGACAACGTCTCCATCCTCCACCACGTGACGCTGG
GCGGGACCGGCAAGGCGGTGGGCGACCGGCACCCCAAGATCGGGGACGGCGTTCTGATTGGCGCCGGGGCGACGATCCTG
GGCAACGTGCTGATTGGCGCCGGGGCCAAGATCGGTGCGGGGTCGGTGGTGCTCATCGATGTGCCGCCGAGGAGCACCGC
GGTGGGGAACCCCGCGAGGCTGATCGGCGGGAAGAAGGGGGAC---------------GACATGCCTGGGGAGTCCATGG
ACCATACCTCCTTCATACAGCAGTGGTCAGACTACACCATTTGA------------------------------------
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>chr3A_1_TraesCS3A01G287400
CATTCAGGCGCCTCCAAAATTGCCGTATATCCACCCCGTTATGT-GGATGGGCATGGGGTGCCAATCAACTCGAACATTT
AGGCAACATAGAAGGGCGGGTTGACTAGCAAAGTTGTTACCGGACAATGACCGACAGTCCACTCAAACGTTTAGAGGAGT
TTGAAGAGCCTGATTGTAAATGCTCTTACCTCGCCGGCTATTTCCCTCTCCGCTTAGGGAAATAAATTGGGACACCTTTA
TTGAAAAAAAAATGGGACACGGCATGGCTCGTGGTCGACCATGAGATGTTCGCATAAAATGTGCATCTCAAGGTCCAATG
CTGGTGGGTCATGCTTGGAGCGCTCGTGTAGGGGCGTAGCAACAAAGATTTTACCATGGATGTATATTTTTAACATTGGG
ACAACAAAAATAATAATGGACATGACCACGAGTCGAAGATGCTTTTGCAACAAGGGG-TTGTTGCAATTGCAACTAGACT
CTGTTGCAAAAGTGATATTGACGGCCACAAACCAAAGATGCTTCTACAACATGGGTCATTTTAAGATTGCAATAAGGATC
TTGTTGGAGTGAGAAAAACAGAGAATAGAAATGCAGATATAATCGCACAG------------------------------
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------------------------------------------AGATTAGACAGCCGGATCTCATGACGGGACCGATCTTT
TTTTTCAATAGATAAGCCGGCCGACGCGTAACACTCA-------------------------------------------
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---------------------------TTTTTTATTTGCGGAGAAGTCAGCGCCACCGTGTGTACGCCAGTCGCCACCCA
CACCCAGTCGTGTCGCCTTCGCTTGCTCTCGGCAACTCGGGCTCGCGCTCTTCGTGTCGTGTGTACCACCTTAGGTTGGG
CCCCGGTCGGAGATAAGTTCCCATTCCATTGGCTGCTGGCTGCCTGGTCCACCA--------------------------
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-------------------CC--CTGGACGTGGCTGTGCTCGCCCCGCCCCCGCGCCTATACATCCGTTCCGCCGACGGC
ACCCAAGACTCACCGCGCCCTCACAAGCCAACGGCCCAGACGCCATCGACGCGACGACGG------CGACGACGACGATG
ACGGCGGGTCAGCCCCTCCGCGCCGATCCCCAGCAGCGCCGCCACAGCCCGCCGGCCCTCCACCCCGCCCTCGTGCCGTC
CTACCCGCCCCCGGAGTCCGACAACGACGAGTCCTGGGTCTGGTCCCAGATCAAGGCCGAGGCGCGCCGCGACGCCGACG
CCGAGCCGGCGCTCGCCTCCTTCCTCTACGCCACCGTGCTCTCCCACCCGTCCCTCGAGCGCTCCCTCTCCTTCCACCTC
GCCAACAAGCTCTGCTCCTCCACCCTCCTCTCCACGCTCCTCTACGACCTCTTCGTCGGCTCCCTCGCCGCGCACCCCAC
CATCCGCGCCGCCGCCGTCGCCGACCTCCTTGCCGTGCGCTCCCGGGACCCCGCCTGCGCCGGCTTCTCCCACTGCCTCC
TCAACTACAAGGGCTTCCTCGCCGTCCAGGCCCACCGCGTCGCGCACGTGCTCTGGGCGCAGAACCGCCGCGCCCTCGCG
CTCGCGCTCCAGTCCCGGGTCGCCGAGGTCTTCGCCGTCGACATCCACCCGGCCGCCGCCATCGGCAAGGGCGTCCTCCT
GGACCACGCCACCGGCGTCGTCATCGGCGAGACGGCCGTCGTCGGCGACAACGTCTCCATCCTCCACCACGTGACGCTGG
GCGGGACCGGCAAGGCGGTGGGCGACCGGCACCCCAAGATCGGGGACGGCGTTCTGATTGGCGCCGGGGCGACGATCCTG
GGCAACGTGCTGATTGGCGCCGGGGCCAAGATCGGTGCGGGGTCGGTGGTGCTCATCGATGTGCCGCCGAGGAGCACCGC
GGTGGGGAACCCCGCGAGGCTGATCGGCGGGAAGAAGGGGGAC---------------GACATGCCTGGGGAGTCCATGG
ACCATACCTCCTTCATACAGCAGTGGTCAGACTACACCATTTGAGGCATTGAGCAGAGCAAGATACCACTGTCCTCCTCT
GTAACCCGCAATACTAATGCCCAGTCACGTCCATTTCTTTCGAATAGTGAACTGGTGCTAGTCT--------TTCTTACT
GTAAGATCTGTCTCCTATGAGGAGAATG--------------------------CAGCCCCGGCAAATGTACTGAACTGG
AAGTTTACCCTGTAACAGTAATTTAA-GAGATGCAATGGTTATTACTCACGTT-GCATCCTCGAGGGCTTTGTAATACTC
GCATACATAATTTTGACGACATAGTTGCTGTTGGTACTTGGTACAAATCAAAT-TGCTCATCTCCATCCTCCACAATGTA
CTGAAAGTTCTTTCTGCAATTCCA-AATTCCAAAGAGAAGGTGAGAACTTATGTACCTGCTTGTCTCCCTCAATATTATT
TAATCGATTGCAATTTTTTGTTGGTAGCTTACCAAGCTGGCCGTTGGCTGCA---TGGTCTCTCAATATATATTGGATCC
TG------------------------------------------------------------------------------
--------------------------------------ATAAGTGTCACTCGCCAGCTACGAGCACATGGCAACTTCGAT
CGTTTTAGACGGCAAGTTTAGTGACGCGAGGATGACAACTTTAGTTGCAAAGCATGCCAACTTTCGTGCTTTAGTTTATT
TTTGACAGAAACTTGCCGTTTGTCACTGAAAATTGTCATCCTTGCGTGGCTGAAATTGCCATCAAAAAATGTTAGGTCCG
CAGTGTCACGCATCTGATATGTGGCACTTCTCATTAAGGTATATTTTCAGAAGTGTCGTTTTCTTTGGAGAAATTGGGAA
CACCAAAGTCTCCACACAGGATGTGCGAAA--------------------------------------------------
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------------------------------TAAAACAGATCAGGCATGAGATATACTTCAAAGAAAACTAGCAGCTAGTA
GGTGGTAAACACTATAGCAGCACATTGTTTTAATTGTTTATAATAGAAAAAGCACATGGTTTTAGTTAATCCTGTGGGTG
ATTGGTAC---------GGGATCCTTGAGTGTTGACACGAAGTGCTAGGTTTTATATGCCTCCTGTATCGGTTCGTATGG
TCTGTGTAGT
>chr3D_1
CATTCAGACGCTTCCGAAATCGCCCTATATCCACCCCCATATGTGGGATGGGCATGGGGTGCCAATCAACTCGAACATTT
AGGCAAGATAGAAGGGTTGGTTGACTAGCAAATTTGTTACCGGACAATGACCAAACTGTCCGCT-AACGTTTAGGGGAGT
TTGAAGGGCCCAATTGTAAATGCTCTCACCT--CCGGCTATTGCCCTCTTCGCTTAGGCAAATAAAATGGGACACCTTTA
TTGAAAAATAAATGGGACACAGTGTGGCTCGTGGTCGACCATGAGATGTTCGCGTAAAATGTGCACCTCAAGGTCCAATG
CTGGTGGGTCATGCTTGGAGCGCTCGTGTAGGGACGAAGCAATAGAGATTTTACCATGGATGCATATTTTTAACATTGAG
ACAATAAGAACAACAATGGACATGACCACGAGTGGAAGATGCTTTTGCAATAAGGGGGTTGTTGCAGTTGCAACTAGACT
CTGTTGCAAAAGTGATATTGACAACTACAAACCGAAGATGCTTATACAACATGGGTCATTTTACAATTGCAACAAGGTTC
TCGTTGTAACGGGAAAAATAGAGAATAAAAATGCGGATATAATCGCACGGTGAGTATCATAGATGCTCAAATGCCTGGTA
TTTGTGGTTTGAGCGGAGGAAACTAACACATGGTGAGACAACACAAACTGCAGCCCAAATTCAATTGGCAGTAAGGGGAC
TAGCAGCGAACTTTGTTATAGCATGTAAGCCCAAAGCGAAGATGAGAGTGATGGCTTGGTCTAAGCCCCGGTCGGGATAT
ATGAAACTTAATGTAGATGCTGGGTTTGATCATGACAATCTGAATGGTAGGGTTGGTGCAATTCTCCGAGATGATAATGG
CAAATTTATAGCTGCAGCAAACGAAAGACTGAATTTTTGCTATGACTCTTTTTCTGCTGAAGCAACGGCTGTGAGATTTG
GATTAAACTTAGCACAGACAGTGGGATGTAGCAAAATTGAGGTTGTCTCCGACAATGAAGAAGTTGTTAATGCTTTGAAG
GAAGGCTTTTCCAGTTCAGTGGCAAGTGCTATATTCGATGACTGTTATTATATGTCGCTAGACTTTAATCATGTTTTGTT
TGATTCATGTATTAGAGATAATAATCAGGTAGCCCATGAATTGGCCAAGTTGGCCAAGTTCTCTCCTCCTAGTATCTGGA
TGGATTCACGTCCGGATGAGATTATACCCTTTTTGTAAGGCCAGCGATAGGCGCCGGTGCGCTGGCCGAAATTTCGGCCG
GTTGCACCACAGCCACCCGATTCACCCCCATGTGCGCCGTTGGATTTGGTCCTCCCTCCCGTGGCATCTTCTTTCCCGCG
CCGCTCGCCAGAAAAAACAGGCCCTCGGCCCCTCGCCATCGCGTAGCGCCATCCCCCACCCACCTCCCACCCCATACCAC
ACTCGTGGTCGTGGGTAACGTCTGGCCGCCGCCGTGGCCGTGACCGGCGAGCACTAGTAAGGTCCAGCCCCCATCGCCGA
GATGGCAACACGGCTGCGAGTAGATCCCAGGGCGCGGTCACTATTGAGATGCAGCTCTAATGCCTGCCTATCATAGGCCA
AGGTCCCATGGCCGCAACAACAAAATCTGCGTTGTCGGATCCGGCTCGCCATCGTCGTCAACTAGCAGCGTCATGTTTCA
ATTGAAAAGTCTGGACGACAAAAATCTCCAATCATCAGTTGAAGCAAAAAAATTGGCCGCTTCCAGCCAAAAATGACAAA
GGTTCCAGCAAAAACAACCACAACAGCAAACTTCAAGAGAGTTCAAAGTAGCAAACAAACTAGCCGCCGGTTGCATCAAA
CAAATGCGCTGGTTCCAGCAAAAATCAAAATGCATGATCCAGCTTCTGCTGTTTGCAGCTTTTCATGGGCTGGTTCCAGC
ACAAGGCATCGTGGTTGCAGCACCCCGCCGTCGCAGCCTCTGCTCGCCCTCGCCGCCGCCATCAGCTTCCACCACCATGT
GCAGCAGCAAAAGTCGGCAATAAAACGGGATTTTACTGGTGGTAGCAAAAAACAAAACTATTCCAGCAAAAAATCATCAT
GGTTCCAGCAAAAATGCGTCAACGCCGACGGTTGCAAACAAAATAATCTCGCCGGATCCAGCAAACTTTTTGCCGGTTGT
AGCAAAACAACAAGCCGGTGCCAACAAAACGACTCGACGGTCGTGCGGTTCCAGCACCGGTCATGTGTGGATGTAGCATT
TTTTTACCATTTCCAGCAAAAACACTTGCCGTTTGCAGCCCCGGAGGGCCTTCGTCTCCACCGTCGACGGCTATTGGTTG
CAGCCTTTTGCCGGTCTGGTTCCAGCCAAAAAACTCACCCGTTCCAGCCAAAAAAACTCACCCGGTAGTGGGGGGAAGCG
CGACGCCACGACCTCGCCGTCCAATCCGCCGGCATCCACCTCGCTTGCAGCATCGGCCATGGGATCGCTCGTCGCCCCCG
CCGTATTTTGCAGTGAGAGCTTGCAGGCCATGGCCGCCCCTAATTCTATGAGCTCGCATGCCATGGCTGAACCTCACATC
AGCAGCATGACGTGTTTGGCGGAGAGCCCGTGGAGCTTGTTGTAGGAGAGGTCGGGGAGGAGAGCCAAGAAGATTGGGCG
GCGACGAGGTAGGAAAGTGAGAGAGGATACGATTTGGATGTGGTATGGTGTGGGGAAAAGATAAGATAAGGGACGTCGTG
CGGTGCGTGGGCCACTAGAGCGACCGGCTGAAATTTCAGCCGGCGTGCCGTCCCGAAACGTTCCTTTTTTTGTAAATGAT
ACAATTGTGATTGAATAAAGGAGGAGATGATTTGTCAAAAAAAGATTGGACAGCCGGATCTAGTGACCCGACCGATCTTT
TTC-TCAAAAGATAAGCCGTCCGACGCGTAACACTTTGG-----------------------------------------
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---------------------------TTTTTTATTTGCGGAGAAGTCAGTGCCACCGTGTGTACGCTGCCCACA-----
---CCAGTCGTGTCGCCTTCGCTTGCTCTCGGCAACTCGGGCTCGTGCTCTTCGTGTCGTGTGTACCACCTTAGTTTTTT
TTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTCCACCACGCTGGACGTGGCTGTACTCG------CCCCGCGCCTATACATCCGTTCCGCCGACGGC
ACCCAAGACTCACGGCGCCCTCACAAGCCAACGGCCCAGACGCCATCGACGCGACGACGGCGACGACGACGACGACGATG
ACGGCGGGTCAGCCCCTCCGCGCCGACCCCCAGCAGCGCCGCCACAGCCCGCCGGCCCTCCACCCCGCCGTGGTGCCGTC
CTACCCGCCCCCGGAGTCCGGCAACGACGAGTCCTGGGTCTGGTCCCAGATCAAGGCCGAGGCGCGCCGCGACGCCGACG
CCGAGCCGGCGCTCGCGTCCTTCCTCTACGCCACCGTGCTCTCCCACCCCTCGCTCGAGCGCTCCCTCTCCTTCCACCTC
GCCAACAAGCTCTGCTCCTCCACCCTCCTCTCCACGCTCCTCTACGACCTCTTCGTCGGCTCCCTCGCCGCGCACCCCAC
CATCCGCGCCGCCGCCGTCGCCGACCTCCTCGCCGTGCGCTCCCGGGACCCCGCCTGCGCCGGCTTCTCCCACTGCCTCC
TCAACTACAAGGGCTTCCTCGCCGTCCAGGCCCACCGCGTCGCGCACGTCCTCTGGGCGCAGAACCGCCGCGCCCTCGCG
CTCGCGCTCCAGTCCCGGGTCGCCGAGGTCTTCGCCGTCGACATCCACCCGGCCGCCGCCATCGGAAAGGGCGTCCTCCT
GGACCACGCCACCGGCGTGGTCATCGGCGAGACGGCCGTCGTCGGCGACAACGTCTCCATCCTCCACCACGTCACGCTGG
GCGGGACCGGCAAGGCGGTGGGCGACCGGCACCCCAAGATCGGGGACGGCGTTCTGATTGGCGCCGGGGCGACGATCCTG
GGCAACGTGTTGATTGGCGCCGGGGCCAAGATCGGTGCCGGGTCGGTGGTGCTCATCGATGTGCCGCCGAGGAGCACCGC
GGTGGGGAACCCCGCGAGGCTGATCGGCGGGAAGAAGGGGGAC---------------GACATGCCTGGGGAGTCCATGG
ACCATACCTCCTTCATACAGCAGTGGTCAGACTACACCATTTGAGGCATTGAGCAGAGCAAGATGCCACTGTCCTCCTCT
GTAACCTGCAATACTAATGCCCAGTCACGTCCCTTTCTTTCGAATAGTGAACTGGTGCTAGTCT--------TTCTTACT
GTAAGATCTGTCTCCGATGAGGAGAAGGTGAACCATACCGTACATTGCCTGCTCAACCCCGGACAAATGTACTGAACTGA
AAGTTCACCCTGTACCTGTAATTTTGCGGGATGCAATGGTCATTACTCAGGTT-GCATCCTCGA-GGCTTTGTAATACTC
GCATACATAATTTTGACGACATAGTTGCTGTTGGTACTTGGTACAAATCAAATATGCTCGTCTCTATCCTCCACAATGTA
CTGAAACTTCTTTCTGCAATTCCA-AATTCCAAAGAGAAGGTGAGAGCTTCTGTACCTGCTTGTCTATCTCAATATAGTA
AATCTAC-TGCAATTTTTTGTTGGTAGCTTACCAAACTAGCCGTCGTTGGCCCCTTGGTATCTCAATATATATTGAACCT
TG------------------------------------------------------------------------------
--------------------------------------ATAAGTGTCACACGTCAGGTACGAGCACATGGCTACTTCGAA
CGTTTTCGACAGCAAGTTTAGTGATGCGGGGATGACAACTTTAGTTGCAGAGCATGGCAACTTTTGTGCTTCAGTTTACT
TTTGATATAAACTTGCCGTCTGTCACTGAAAATTGCCATCCTGCCGTGACTGAAATTGCCATCGAAAAACGTTAGGTCCG
AAGTGCCACGCACCTGACGTGTGGCACTTATCATTTAGGTATATTTTCAGATGTGTCGTTTTCTTTGAAGACATTGGAAA
CACCAAAGTCTCCATACAGGATGTACGAAA--------------------------------------------------
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------------------------------TAAAACAGATCAGGCATGAGATATACTTCAT-GAAAACCAGCAGCTAGTA
GGTGGTAAACACTATAGCAGCACATTGTTTTAATTGTTTATAATA-AAAAAGCACATGGTTTTAGTTAATCCTGTGGGTG
ATTGGTAC---------GGGATCCTTGCGTGTTCACACGAAGTGCTAGGTTTTATATGCGTCCTGTATCGGTTTGTATGA
TCTGTGTAGT
>chr3B_515
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------------------------------------GATGCCTCTACAACATGAGTCATTTTACGATTGCAATAAGTTTC
T-GTTGTAGTGAGAAAAACAGAGAATAGAAATGCAGATATAATCGCACGGTGAGCATCATAGATTAT-------------
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------------------------------------------AGATTACACAGCCGGATCTCATGACCCGACCGATCTTT
TT--TCAAAAGATAAGCCGTCCGACGCGTAACACTCATTTTTTATTGGGAAACGATTGGGCGCGGTGCGCCGGCCGAACT
TTGGGCCGGTCGCATCCACGCGCGCTTTGCTCCAGCCACCCACCAGGCGACACGTAGACATGGGGGCCACCAAACGTTAT
CCTTTCTGCTTTCTTCCACCTCGCGCGGATCTCGCCCCACAACGCATGCATCTCTCGCCTCCCCTGATGCAGCACGTGAG
CACTCGCCGTCGGCCATGGATGAGCTTGGAAGATCGAAGTCCCCGTCGGGCCATGGTTGCAGCCCCGCTCGTGTTCCCAC
CTCCCCCTCTTCCTTCTTCCTCACTTCCTTTCTCCTCCTCTTTCCCCCTTTTTTGCTGCAACCGGCGGCAGGCAAAACGT
CGTGGAGGGGACCGAGGTGCCCCGTGCTACGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTGCGAACAGAGGAAAAAGCTACAACCGTGTTTCC
CCATGCTACAACCGTGGACGCAAAAAGCTACATCCAACAGATAAAAAAGCTTCAACCAAACAATGGAACAGAGGAAAAGT
TACAACCGTTTTGACAAAAGCTTCAACCCGCAGATGAAAAAGCTTCAACCAGAGATTAAGAAATCTTCAGCCGGGGGATT
TTTTCGCAACCAAAATGTTGGACACAGAAAAAGCTGCAACCCTTACAAAAAAAGCTTCAACCCTGGGTGAAAAAAGCTTC
AATCGGCATGGCGGAAGTTTTAATGTGCGAAAAAAGTTTCAACCGGCGTAGAGAAAAGCTGCAACCGATGATAGAAAAAG
CTTCAACCCGACTCACCAATGGTGGCAAGCGGCGAAGTTGAGAGCTGCACGGCGACACGACAAACGCAACGACGACGGCG
GCTGATAGGTGCTGCAACGACAGAGGGGCTTCGGCGTGCTTCAAGGCGGCGGCGTTTTTTGCTACAAGGGGGCAGCGACT
TCCTGCTGGGGAACGCGAGGGGTGCTGCGACGGCGACCGGCGGCGATGGGGACGAAGAGCGCATCCAGCAACATGGGACT
GCGAGGGGGGGAAGAGGTCCAGGTGAGGGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNGGGCGGCGGCAGGAGGCGGCCGGGGTGGGCGCGCGCGGAAGAAGAAGAAGAGAGAAGTCAA
CGCGGAGGGGAGAAGGCAGATCTGACGGCTTTGGTTGGCTGCATCGGGCGGCTGGGACGCGACCGGCCGAAACGGTTCGG
CCGGCGCGCGGGCGCCTAGCATCGCCCTTTTTTATTTGCGAAGAAGTCAGCGCCACCGTGTGTACGCCACCCACA-----
---CCAGTCGTGTCGCCTTCGCTTGCTCTCGGCAACTCGGGCTCGTGCTCTCCGTGTCGTGTGTACCACCTTAGGTTGGG
-CCCGGTCGGAGATAAGTTTCCATTCCATTGGCTGCCGACTGGCTGGTCCACCA--------------------------
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-------------------CACGCTGGACGTGCCTGTACTC------CCCCCGCGCCTATACATCCGTTCCGCCGACGGC
ACCCAATAGTCAC--CGCCCTCACAAGCCAACGGCCCAGACGCCATCGACGCGAC---------GACGACGACGACGATG
ACGGCGGGTCAGCCCCTCCGCGCCGATCCCCAGCAGCGCCGCCACAGCCTGCCGGCCCTCCACCCCGCCGTCGTGCCTTC
CTACCCGCCCCCGGAGTCCGACAACGACGAGTCCTGGGTCTGGTCCCAGATCAAGGCCGAGGCGCGCCGCGACGCCGACG
CCGAGCCGGCGCTCGCCTCCTTCCTCTACGCCACCGTGCTGTCTCACCCGTCGCTCGAGCGCTCCCTCTCCTTCCACCTC
GCCAACAAGCTCTGCTCCTCCACCCTCCTCTCCACGCTCCTCTACGACCTCTTCGTCGGCTCCCTCGCCGCGCACCCCAC
CATCCGCGCCGCCGCCGTCGCCGACCTCCTCGCCGTGCGCTCACGGGATCCCGCCTGCGCCGGCTTCTCCCACTGCCTCC
TCAACTACAAGGGCTTCCTCGCCGTCCAGGCCCACCGCGTCGCGCACGTCCTCTGGGCGCAGAACCGCCGCGCCCTCGCG
CTCGCGCTCCAGTCCCGGGTCGCCGAGGTCTTCGCCGTCGACATCCACCCGGCCGCCGCCATCGGCAAGGGCATCCTCCT
GGACCACGCCACCGGGGTCGTCATAGGCGAGACCGCCGTCGTCGGCGACAACGTCTCAATCCTCCACCACGTCACGCTGG
GCGGGACCGGCAAGGCGGTGGGCGACCGGCACCCCAAGATCGGGGACGGTGTTCTGATTGGCGCCGGGGCGACGATCCTG
GGCAACGTGCTGATTGGCGCCGGGGCCAAGATCGGTGCCGGGTCGGTGGTGCTCATCGATGTGCCGCCGAGGAGCACCGC
GGTGGGGAACCCCGCAAGGCTGATCGGCGGGAAGAAGGGCGAC---------------GACATGCCTGGGGAGTCCATGG
ACCATACCTCCTTCATACAGCAGTGGTCAGACTACACCATTTGAGACATTGAGCAGAGCAAGATGCCACTGTCCTCCTCT
GTAACCTAT---------------------------------AATACTGAACTGGTGCTGGTCTCAAAGTTGTTCTTACT
ATAAGATCTGCCTCCGGTGAGGAGAA-GTGAACCATACCGTACATTGCCATGCTCAACCCCGACAAATGTACTGAACTGA
AAG--CACCCTATACCTGTAATTTTGCGAGATGCAATGGTCATTATTCAGATTGGCATCCTTGA-GGTTTTGTAATACTC
GCATAGATAGTTTTGAGGACATAGTTGCTGTTGGTACTTGGAACAAATTAAAT-TGCTCGTGTCCGGACA----AATGTG
CTGAAACTTCTTTCTTCAATTCCCGAATTCCAAAGAGAAGGGGGGAGCTTCTGTACCTGCCTATC---------------
----------------------------------------------------------TCTCTGAATATATTTTCAGATG
CAGAATGACTAATTCATATCTAAATGTTATTTAAAGATGTCACATCTAAATAGTTCATCACATAATAAGGTAATTCAAGA
TTTGTACAAAATATTTTCTTATTTTTTTCTAATGTTGTATAAGTGTCATGCTTAGATGTGGCATAGTTACGTCACATCTA
GATGAGTCCTAACCACACCC------------------------------------------------------------
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--------------------------------------------TTTCAGATGTGTCGTTTTCTTTG---------GAAA
CACCAAAGTCTCCATAGAGCATCTACGAAACAGTGCTGCTATGCACACGATGTTGACGGACGATTTGTGGACGACAGCAC
TTATCAGATCGTCCATGCATAGCATCAAACCGTAGTTGACGGCTGGATTGCCCGTCGTCTCACTGTCGTGCAAGCACGTT
GTCGTCCACACAGCAGTTTCGTCTACGAAATAAAACAGATCACGCATGTCATATACTTCAT-GAAAACTAGCAGCTAGTA
GGTTGTAAACACTATAGCAGCACATTGTTTTACTAATTGCTAATA-AAAAAGCACATGGTTTTAGTTAGTCCTGTGGGTG
ATTGCCTGATTGGTACGGGAATCCTTGCGTGTTCACACGAAGTGCTAGGTTCTGTATGCGTCCTGTATCGGTTTGTAAGA
TCTGTGTA--
>chr1A_1033
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-----------------------------CCAGCACCCGCCGCCCGCCACGCCCGCGCTCCCGTCCGAGGTGGTGCCGGC
CTACCCGCCGCCGGAGTCGGAGGACGACGAGTCCTGGGTGTGGACGCAGATCAAGGCGGAGGCCCGGCGCGACGCGGACG
CCGAGCCGGCGCTCGCCTCCTTCCTCTACGCCACGGTGCTCTCCCACCCCTCCCTGCCCCGCTCCCTCTCCTTCCACCTC
GCCAACAAGCTCTGCTCCTCCACCCTCCTCTCCACGCTCCTCTACGACCTCTTCCTCGCCTCCCTCACCGCGCACCCCTC
CCTCCGCGCCGCCGTCGTCGCCGACCTCCTCGCCGCGCGCGCCCGCGACCCCGCCTGCGTCGGCTTCTCCCACTGCCTCC
TCAACTACAAGGGCTTCCTCGCCATCCAGGCGCACCGCGTCGCGCACGTGCTCTGGGCGCAGAACCGCCGCCCCCTCGCG
CTCGCCCTCCAGTCCCGCGTCGCCGACGTCTTCGCCGTCGACATCCACCCCGCCGCCGTCGTCGGCAAGGCCATCCTCCT
CGACCACGCCACCGGCGTCGTCATCGGGGAGACCGCCGTCGTCGGCGACAACGTCTCCATCCTCCACCACGTCACCCTCG
GCGGGACCGGCAAGGCCGTCGGCGACCGCCACCCCAAGATTGGGGACGGGGTGCTCATAGGCGCCGGCGCCACCATCCTC
GGCAACGTCATGATTGGAGCCGGGGCCAAGATTGGGGCTGGCTCCGTGGTGCTGATAGATGTGCCGGCGAGGAGCACCGC
GGTGGGCAACCCTGCCAGGCTGATTGGAGGGAGGAAGGGCGAGTCCGACAAGGACGAGGACATGCCCGGAGAGTCCATGG
ATCACACCTCCTTCATACGGCAGTGGTCCGACTACACCATCTGAGG----------------------------------
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>chr1D_1076
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------------------------------------------------------------------------GTGCCGGC
CTACCCGCCGCCGGAGTCGGAGGACGACGAGTCCTGGGTGTGGACGCAGATCAAGGCGGAGGCCCGGCGCGACGCGGACG
CCGAGCCGGCGCTCGCCTCCTTCCTCTACGCCACGGTGCTCTCCCACCCCTCCCTGCCCCGCTCCCTCTCCTTCCACCTC
GCCAACAAGCTCTGCTCCTCCACCCTCCTCTCCACGCTCCTCTACGACCTCTTCCTCGCCTCCCTCACCGCGCACCCCTC
CCTCCGCGCCGCCGTCGTCGCCGACCTCCTCGCCGCGCGCGCCCGCGACCCCGCCTGCGTCGGATTCTCCCACTGCCTCC
TCAACTACAAGGGCTTCCTCGCCATCCAGGCGCACCGCGTCGCGCACGTGCTCTGGGCGCAGAACCGCCGCCCCCTCGCG
CTCGCCCTCCAGTCCCGCGTCGCCGATGTCTTCGCCGTCGACATCCACCCCGCCGCCGTCGTCGGCAAGGCCATCCTCCT
CGACCACGCCACCGGCGTCGTCATCGGCGAGACCGCCGTCGTCGGCGACAACGTCTCCATCCTCCACCACGTCACCCTGG
GCGGGACCGGCAAGGCGGTCGGCGACCGCCACCCCAAGATTGGGGACGGTGTGCTCATAGGCGCCGGCGCTACCATCCTC
GGCAACGTCATGATTGGAGCCGGGGCCAAGATTGGGGCTGGCTCCGTGGTGCTGATAGATGTGCCGGCGAGGAGCACGGC
GGTGGGCAACCCTGCCAGGCTGATTGGAGGGAGGAAGGGCGATTCCGACAAGGACGAGGACATGCCCGGAGAGTCCATGG
ATCACACCTCCTTCATAAGGCAGTGGTCCGACTACACCATCTGAG-----------------------------------
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>chr1B_1076
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------------------------------------------------------------------------GTGCCGGC
CTACCCGCCGCCGGAGTCGGAGGACGACGAGTCCTGGGTGTGGACGCAGATCAAGGCGGAGGCCCGGCGCGACGCCGACG
CCGAGCCGGCGCTCGCCTCCTTCCTCTACGCCACGGTGCTCTCCCACCCCTCCCTGCCCCGCTCCCTCTCCTTCCACCTC
GCCAACAAGCTCTGCTCCTCCACCCTCCTCTCCACGCTCCTCTACGACCTCTTCCTCGCCTCCCTCACCGCGCACCCCTC
CCTCCGCGCCGCCGTCGTCGCCGACCTCCTCGCCGCGCGCGCCCGCGACCCCGCCTGCGTCGGATTCTCCCACTGCCTCC
TCAACTACAAGGGCTTCCTCGCCATCCAGGCGCACCGCGTCGCGCACGTGCTCTGGGCGCAGAACCGCCGCCCGCTCGCG
CTCGCCCTCCAGTCCCGCGTCGCCGACGTCTTCGCCGTCGACATCCACCCCGCCGCCGTCGTCGGCAAGGCCATCCTCCT
CGACCACGCCACCGGCGTCGTCATCGGGGAGACCGCCGTCGTCGGTGACAACGTCTCCATCCTCCACCACGTCACCCTGG
GTGGGACTGGCAAGGCGGTCGGCGACCGCCACCCCAAGATTGGGGACGGCGTGCTCATAGGTGCCGGCGCCACAATCCTC
GGCAACGTCATGATTGGAGCCGGGGCCAAGATTGGGGCTGGCTCCGTGGTGCTGATAGATGTGCCGGCGCGGAGCACGGC
GGTGGGGAACCCTGCCAGGCTCATCGGAGGGAGGAAGGGCGAGTCCGACAAGGACGAGGACATGCCCGGAGAGTCCATGG
ATCACACCTCCTTCATACGGCAGTGGTCCGACTACACCATCTGAG-----------------------------------
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>SNPs
-------S---S---S----S---S------------SS-----------------------------------------
------S---------SS--------------S-------------------S-SSSSS-SSSSS---------S-----
------S---SS--------------S----SS---------S------S--------S-------S-------------
--------S-----------S-SS-----------------------------S-----------S--------------
---------------------------------S--S-----S-S-----------------S---------------S-
----S--S--S--S-------------------S----------------S---------------S-------------
----------------------SS-S-------S-----------------------------S-------------S--
-S----S-----------------------------------------S-------------------------------
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-------------------------------------------------------------------SS-----------
--SS----S----------S------------------------------------------------------------
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---------------------------------------------------------------------SS-S-SSSSSS
SSS------------------------------------------S----------------------------------
S------------------S----------------S-S---S-------------------------------------
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--------------------S----------------S----SSSSS---------------------------------
-------------S------------------------------------------------------------------
---------------------------------------------------------------------S----------
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------------------------------S-------------------------------------------------
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------------------------------------------------------------------------S-------
--------------------------------------------------------------------------------
--------------------------------------S-----------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------S---------------
------S-------------------------S-----------------------------------------------
---------------S----------S-----------------------------S-----S----------------S
-----S--------S-S-------SS--------------S--------S--------------S---------------
-----------------------------------------------------------S--------------------
------S---------------------------------------S---S---------------SS--------SS-S
S-SSSSSS---------------------------S--S-----S-SSS--S-----------------------S-S-S
--------------------------------------------------------------------------------
-------------------------------------------------S--S---S--------------S-------S
------S---S-------------S---S--------------------S------S-------S------S------S-
-----S-S-----------S---------------S------SS----S--------------S-----S----------
S----S------S----SS----------S-----S---------------S---------------S---S-----S--
--------------S---------S-------------------------------------------------------
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------------------------------------------------------------SS------------------
---------------------------------------------S----------------------------------
---------------------------S-----S-------------------------S-------------S-----S
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>forward_4677
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-----------------TTCCCATTCCATTGGCTGCT-------------------------------------------
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>reverse_6790
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---------------------------------------------------------------------TGTTAGGTCCG
CAGTGTCAC-----------------------------------------------------------------------
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----------
