>input_sequence_65614
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----------------------------------------CCGGACACCATACGACGACCTAAGTTTCTTGCACACGCAC
AACTCCCGTACACGCAATGGCGTCCAAACCGATCTTCGCCTGCGTCGTCCTCCTGATCGCCATCGCCGCCGCGGCAATCA
CGCCGGCATCCGCGGCCGGAGCTAACCCCACCGCCGTCGGCGGTGGCTCCGACGAGACGGCAACGACGTGCGTGCCGACG
CTTGAGCGCCTTCTGTCGTGCCTGGACTTCATCGAGCACCGCACCGACGCGATCCCGCTGCCCTGCTGCGTCCAGGTGAA
CACCACGGTGGCGCAGCAGCCGTGCTGCCTCATGCACGTCCTGCGCGGCGACGTCGCGCGGCTCATGGGGCCGGAGTTCG
ACAGCTCCCGCGCCATGGTCAACGTCACCTCCAGGTGCCTCGGCGACGGCTCCATCCTCATGTCCATCACTCGTTCGTGC
GCAGGTTCGTGATCGTACATACCGAGTGTATTTTTT--------TTACTATCGAATCTGTTGCCATCGTCCTTGATTTTA
TGTTCTGTTCTTCAGGCAAGCCGCTTCCGCCGCTGACGCCTGAATATCCCTTCACTGCCGCGTTGCCGCCGCCGCCGCCG
CCATCCTCAGGTGAGCAG---ATCAGTTCTGAGATCGCCGTGCTTTTGTGTGTACGTATATGCA---GATTGTTCCGACG
TATGACTCCGTTTGTCGATCGTTTGGTAATTGGTTCTCTGTGTGCAGGATCAGAACGGCTGGAAGGCTTCTCTTACGCCG
TATTGCTAGTTGCACTGGTTGCAAGCTTCT---------TGTGATCTGTCGGGAAACTGGCGATCAGCTGGCTGGACGTA
CATGGAGA--AAATCTGGACACGTTTGATGTTGAACAAAATATAGTTACAGTTTTGCTAAAGCACATCTAGATGTGCTAT
AAATATTGCACATCTAA---------------------------------------------------------------
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>chr2A_1_TraesCS2A01G118200
ACCATCGAGCACCGGCGACGAGGGCAGTCCCGGTGCTTGTCATTGTTGAGCTAGAGCCTCTTCATGGTAGCGCTTGGTGT
CGTCGGTGCCTTCGTGGGCATGTTTTTTTTTTGGCGGGTAATTGTGGGCATGCTTGCGCGTGGCGTCGTAGGGACTTTGC
TACATCTACGTACACAGCTTGTCATAGTTTAATTGGAAGAAATAATTGCCCGGGCCTCATCCCACGAAATTCAGAGGAGT
AATGCTACACGTACAAACGAGTTACAAGCTTTTACAAAGAGGGTTAATTTGATTGGTCAATAGGTGCGGAGGCGGCCCAC
CTCCCTGAAAATCAGGGGGGACAAGTTTATGATTGGTTAGTAGATGAAAAAAATTCTAGTCAGCGTGTAATTGCGTGTAA
CTTTTTGTATGTTTAGCATTATTGAATTCAAAGGGGGGAGAGAATTAGATTAGGCAGTTTTAGTAACAATACGTAGGAAG
GTTATATGTAGGTGTAGAATTATTGGGCATCGTAGAGGTGCATGACATGCACGGTGGGCTTGCTCGGTGGCGAGCGCACC
GTGCATGCGGGCGAGCATGCGCAGCTCCGACTCCTGGTCGTCACGGACAAGGCGCTCCATCCGTCCCGTGGCCGCTGCAC
AAGTACGCCTCCTCCGCGCAGTGCACAATGGAGATTTGGGGAATAACGGAGTGGCAGTGAAGTCGACTGTGATGTGTCAA
TCAAATCCGAAAGACATGTCAAGTTTTTAGTAAAAAACGTATCCACGTACGACGGGAACCACCGGAAGTGGTACGAGAGA
TTAAACTTATCTGATTTAAAAAGTTGAGGGACGATTTTTATACTTTCGAGGGAGTTAAAAAAAATGTAGTTTTCCATTTA
AAAAGATGACTATTAATGTTTTTTCAAACAAAGGAGAGACCGGTAATGATACTCTGAATGCAGCTTTATCTGAATTCTAA
AACCCGCGTCACTATATAGCCCATCCGGCGACGTAGCCAACCGGACACCATACGACGACCTAAGTTTCTTGCACACGCAC
AACTCCCGTACACGCAATGGCGTCCAAACCGATCTTCGCCTGCGTCGTCCTCCTGATCGCCATCGCCGCCGCGGCAATCA
CGCCGGCATCCGCGGCCGGAGCTAACCCCACCGCCGTCGGCGGTGGCTCCGACGAGACGGCAACGACGTGCGTGCCGACG
CTTGAGCGCCTTCTGTCGTGCCTGGACTTCATCGAGCACCGCACCGACGCGATCCCGCTGCCCTGCTGCGTCCAGGTGAA
CACCACGGTGGCGCAGCAGCCGTGCTGCCTCATGCACGTCCTGCGCGGCGACGTCGCGCGGCTCATGGGGCCGGAGTTCG
ACAGCTCCCGCGCCATGGTCAACGTCACCTCCAGGTGCCTCGGCGACGGCTCCATCCTCATGTCCATCACTCGTTCGTGC
GCAGGTTCGTGATCGTACATACCGAGTGTATTTTTT--------TTACTATCGAATCTGTTGCCATCGTCCTTGATTTTA
TGTTCTGTTCTTCAGGCAAGCCGCTTCCGCCGCTGACGCCTGAATATCCCTTCACTGCCGCGTTGCCGCCGCCGCCGCCG
CCATCCTCAGGTGAGCAG---ATCAGTTCTGAGATCGCCGTGCTTTTGTGTGTACGTATATGCA---GATTGTTCCGACG
TATGACTCCGTTTGTCGATCGTTTGGTAATTGGTTCTCTGTGTGCAGGATCAGAACGGCTGGAAGGCTTCTCTTACGCCG
TATTGCTAGTTGCACTGGTTGCAAGCTTCT---------TGTGATCTGTCGGGAAACTGGCGATCAGCTGGCTGGACGTA
CATGGAGA--AAATCTGGACACGTTTGATGTTGAACAAAATATAGTTACAGTTTTGCTAAAGCACATCTAGATGTGCTAT
AAATATTGCACATCTAAATCATATATCATTAATCTTACATTGAGATTCGTGTGGATATTTTTTTTTTTTTTCTCTTTGTG
TTTGATTCACTCACTTAAATGTGCAATAACTAGAGCACATTTAGATGTGTCCTAGACACACCCATATAGTTAATTCTTGT
GTTTCTCTGTCTTTCTTTACTCTGTTTATTCTGTAATTCTATGTATATGTTTAGCAGTTTTGTTAAAGCACATCTAGATG
TGTTATAAGTATTGCACATCTAAGTCCTATGTCATTGATCGTACGGCGAGATTCGTGTGAACATTTTCTTTTTCTTTTTT
TCTTTTTTTATGCTTGATTCACTCACTTAGATGTGCAATAATTAGAGCACATCCGCTAGCGATAATATACCTACGGATCA
GCAAACCTTTCGTATTCACCTGATACTTTTGAGAATTCCCAAGCACAAACATTCACCGGTCTGTCTTAATTTATTCCATT
TGTGGAGAGTGGGTTTTTCACACCCTCATGTAGCTACACTTTCTATCTAGCCCATTCAGTTTGCGTCAAGATCCATGCCA
TCCTTATATATAAATTTATCTTCTTCGTTTCTTCCAAACAAGAGAACATTCGACCTTGAAACTTTGTAGGTTAACTATGC
ATAAGTGCCACTCTTTGTATAAAATATTTTTTGTATAAAATATAAATGTGTCAAATTTCAAATTTTGAATGAGTTGTAAC
ATTTTTTTTAAATTTGTGTTGCCCCAAAAAACCCGAAAATGTTTCTGCACATGATAATACTTGTGTGATGTTGATTTGCA
AAGTTAGTTCAAATGTTCTTTTATTCGGGAGAAACAAAAAAGAGAAGTTTGCCTGCACAAACTTTGCTGCAAAAATGGAC
GGTGAGGATAGAAGGTGTAGTTTGAACAAATTTGTTTAGTTATACTTAGCTTTATGAAGATCATGAACCATGTTTTTCAC
AAATAGGATGGAAAGAAACTAAAAGAGGATGTTGTCTGTTAATACTCTTGTGTGAAG
>chr2B_879
TAAAAAG-------------------------------------------------------------------------
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-------GACTAGTAATGTTTTTTCAAA----GGAGAGACCGGCAATGATACTCTGAATGCAGCTTTATCTG-------A
AACCCGCGTCACTATATAACCCATCCGGCGACGTAGCCAACCAGACACCATACGACGACCTAAGTTTCTTGCACACGCAC
AACTCCTGTACATGCAATGGGGTCCAAACCGTTCTTCGCCTGCGCCGTCCTCCTGATCGCCATCGCCGCCGCGGCAGTCA
CGCCGGCGTCCGCGGCCGGAGCGAACCCCATCGCCATGGGCGGTGGCTCCGACGAGACGGCAACAACATGCGTGCCGACG
CTTGAGCGCCTGCTGTCGTGCCTGGACTTCATCGAGCACCGCACCGACGCGATCCCGCTGCCCTGCTGCGTCCAGGTGAA
CACCACGGTGGCCCAGCAGCCGTGCTGCCTCATGCACGTCCTGCGCGGCGACGTCGCGCGGCTCATGGGGCCGGACTTCG
ACAGCACCCGCGCCATGGTCAACGTCACCTCCCAGTGCCTCGGCGACGGCTCGATCCTCATGTCCATCACTCGTTCGTGC
GCAGGTTCGTGATCCTACGTACCCAAGTGTA--TTT--------TTACTACCG-ATCTGTTGTAATCTTCCTTGATTCTA
TTTCCTGTTCTTCAGGCAAGCCGCTTCCGCCGCTGACGCCTGAATACCCCTTCACTGCCGCGTTGCCGCCGCCGCCGCCG
TCATCGTCAGGTGAGCAG---ATCAGTTCTAAGATCGCCGTGTTTTTCTGTATGAG--TATGCG---GATTGTTCCGACG
TATGATTCCGTTTGTCGATCGTTTGGTAATTGGTTCTCTGTGTGCAGGAGCAGAACGGCTGGAAGGCTTGTCTTACGCCG
TATTGCTAGTTGCACTCGTTGCAAGCTTCTTGTGAATCTTGTGAACTATCGGGAAACTGGCGATCAGCTGGCTGGACGTA
CATGGAGA--AAATCTCGACACGTTTGATGTTGAACAAAATATAGTTA--------------------------------
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------------------------------------------------------------------------ATTCTTGT
GTTTCTCTGTCATTCTTTACTCTGTTTGTTCTGTAATTCTACGTCTATGTTTAG--------------------------
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>chr2D_933
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----------------------------------------------------TCTGAATGCAGCTTTATCTG-------A
AACCCGCGTCACTATATAACCCATA---CGACGTAGCCAACCAGATACCATACGAC---CTACGTTTCTTGCACACGTAG
AACCTCCGAACACACAATGGCGTCCAAACCGATCTTGGCCGGCGTCGTCCTCCTGATCGCCATCGCCGCCGCGGCAGTCA
CACCGGCATCCACGGCCGGAGCGAACCCCGTCGCCATCGGCGATGGCTCCGACGAGGCGGCAACGACATGCGTGCCGACG
CTTGAACGGCTGCTGTCGTGCCTGGACTTCATCGAGCACCGCACCGACGCGATCCCGCTGCCCTGCTGCGTCCAGGTGAA
CACCACGGTCGCCCAGCAGCCGTGCTGCCTCATGCATGTCCTGCGCGGCGACGTCGCGCGGCTCATGGGGCCGGACTTCG
ACAGCGCCCGCGCCATGGTCAACGTCACCTCCAGGTGCCTCGGCGACGGCTCCATCCTCATGTCCATCACTCGTTCGTGC
GCAGGTTCGTGATCGTACGTACCCAGGTGTA--TTTTTAGTTTTTTACTGCCG-ATCTGTTGTCATCTTCCTTGATTGTA
TGTTCTGTTCTTCAGGCAAGCCGCTTCCGCCGCTGACGCCTGAATATCCCTTCACTGCCGCGTTGCCGCCGCCGCCGCCG
TCATCCTCAGGTGAGCAGCTTATCAGTTCTGAGATCGACGTGCTTTTGTGTATACGCGTGCGGGATTGATTGTTCCGACG
TATGATTCCGTTTTCCGT-----------TTGATTCTCTGTATGCAGGGGCAGGACGGCTGGAAGCCTTGTCTTACACCG
TATTGCTAGTTGCACTCGTTGCAAGCTTCTTGTGA---------TCGGTCGGCAAACTGGCGACCAGCTGGCTGTGGTTG
GATGTGGAACAAATCTGTACCTGTTTGATTTTGAACGAAATATAGTTA--------------------------------
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>SNPs
SSS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS-----S---------------SSSS-----------S----------------------------SSSSSSS-
------------------S-----------------------S-------------------------------------
----------------------------------------------------------------------------S---
----------------------S-------S----S-------------------------------S------------
-----------S--------------------------------------------------------------------
------------S--------------------------------------------------------------S----
-----S--------------------------------------------------------------------------
------------------S----S--SSSSSSS-----------------S--S--------S----S---------S--
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S--------------------------------------------------S----SS-----S----------------
-----S-------------------------------------------S-------------------S----------
----------------S---------------------------------------------------------------
------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------
-----------S---------------S-------------S--S---------SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_712
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----------------------------------------------------GGCAGTGAAGTCGACTGTGA--------
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>reverse_2282
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-----------------------------------------TTAGAGCACATCCGCTAGCG-------------------
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