>input_sequence_65587
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-----------------------------------------------ATGGCGCAAACCATGGCGTCCATGACCGGCCTG
TCGCAGGGCGTGCGTCTCCCAGGCCCGGCCGGCAGGCGCGCCAGCAGGTTCACCGTGAGGGCGTCGTCGGCGGAGGCCGA
GGCCGCCGGCCGCCGCGCGGTCCTTGGCCTCATGGCCAGCGGAGTCGTCGGGAGCGCGTTCGCTCAGGTGGTGCACGCCG
GCACCGTCGCGGCCATCAAGGTTGGCCCCCCGCCGCCGCTCTCCGGTGGACTCCGTGAGTGCCTCCAGCCGCTCGTACAT
CATCTA--------TACTCGCTTTACACAATAATAATATAGTATAGCAAGGAGTAGAATTTTACGCCTGATCTGATGGA-
TGATTTGGGTGTGTGTGTTCAGCCGGAACGGACAACTCGGACGAGGCAAGGGACTTCGACCTGCCCCTGAAGAACCGGTT
CTACCTGCAGCCGCTGCCACCGGCGGAGGCGGCGGTGCGGGCCAAGGAGTCGGCCCAGGACATCCTCAACCTCAAGCCGC
TCATCGACAAGAAGCAATGGCCGTACGTCATGAACGACCTCCGCCTCAGGGCCTCCTACCTGCGCTACGACCTCAAGACC
GTCATCTCCTCCAAGACCACCAAGGAGGAGAAGAAGGACCTCAAGGACCTCACCGGCAAGCTCTTCGCCACCCTCGACGG
GGTAAGAAACCTACCATCTCGCAATTTCAGCTATTACCTTATGTCTCTTCAGAAACATGGCCATCTTAATTCTTACTGCA
TCAAACCTGAACATTTTCTCAAGAAGAATT---GCAGGACTAACAGGTGTGAGCTTCTCCATTTTGTTTGCAGCTTGACC
ATGCAGCCAAGATCAAGAGCCCCACCGAGGCCGAGAAGTACTACGGCGAGACCAAGACTGTTCTCGGCGATGTCCTCGCC
AAGCTAGGCTAG--------------------------------------------------------------------
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>chr2A_1_TraesCS2A01G215000
ATTTCAAAAAACCATGCTCTTGATAGCCACCGCTAGTCTGCTCTGCTTCCAATTGTGTGACTAACACTGTACCGAACATT
TCGTAAAAGTTTTTTTATCACATATTGCATATTCATTCACTCCTTCCTGCCAATGTTGATCGGGTTGACAAATCTCTTAC
CTTACTGCGCCCTAATAGGCCATAACTTCATGACTACCTAGACAACTGAGGTTGGTGTTGAATCCATTGCAAGCCCTAAG
ACCCTAAGCTTTCCCATAGGATGCTGGCG----AAAAGAATACCAATGACATTGGCACAGGTGTTGGCGCCAATCTTTGG
AAGTCGGGTGAGGAATGATCTCTCTAGCTCACATTGTGATATATTAGATTGATGCAAGTCCGCAACATCGCCGATGAAAT
AGGGCGAGAAACATAGATGAGATCGACGCAAATCTGCAAAAAAGACTGCGGCTCTAGAGTTGTGTTGTGGTAAACTTACT
TTTTATAGTCTTTTCATGAGAAAACAACAATTGAATATAGGGAAAATATGTTAAAACAACTTATAACTC--AATAAAACT
TGGTTGGACTAATGAGTTACTATAATCCATCACAATGATTAATGCAGTG-ATGTGAAGTGAAATTTCAAATGCTATGCTG
ATAAAGAAATCGGCCATGGTGTTTGCTGGGAAAAGAAATTATCCAGATATAACAAAGTGACAAAACAAGGAAATCTTACT
GGCCAACTGAAGCCCAAGCACCGTCGACACATGTCTGTCACTCATTGGCCAGGGCGCAATCCAAATGGAGGTCAGGCGAC
GCAGCATGCCACAAGCCGGTGCCACACGGCGCGCGCGCATTGGCCGCGAACTTATCCAGTCAGATAAGGTTTCGCGCCGC
ATAGGACAGCAACACGCTACACGTCCTCCTCATATATTTTTGGCAGTCGATCGAGAGATCGCTAGCTTCTCAAGAGGGAT
AAGAGAGAAACACAGAGCAAGAAGAGAAGAGAGAAGCAAAGCTTGAGATGGCGCAAACCATGGCGTCCATGACCGGCCTG
TCGCAGGGCGTGCGTCTCCCAGGCCCGGCCGGCAGGCGCGCCAGCAGGTTCACCGTGAGGGCGTCGTCGGCGGAGGCCGA
GGCCGCCGGCCGCCGCGCGGTCCTTGGCCTCATGGCCAGCGGAGTCGTCGGGAGCGCGTTCGCTCAGGTGGTGCACGCCG
GCACCGTCGCGGCCATCAAGGTTGGCCCCCCGCCGCCGCTCTCCGGTGGACTCCGTGAGTGCCTCCAGCCGCTCGTACAT
CATCTA--------TACTCGCTTTACACAATAATAATATAGTATAGCAAGGAGTAGAATTTTACGCCTGATCTGATGGA-
TGATTTGGGTGTGTGTGTTCAGCCGGAACGGACAACTCGGACGAGGCAAGGGACTTCGACCTGCCCCTGAAGAACCGGTT
CTACCTGCAGCCGCTGCCACCGGCGGAGGCGGCGGTGCGGGCCAAGGAGTCGGCCCAGGACATCCTCAACCTCAAGCCGC
TCATCGACAAGAAGCAATGGCCGTACGTCATGAACGACCTCCGCCTCAGGGCCTCCTACCTGCGCTACGACCTCAAGACC
GTCATCTCCTCCAAGACCACCAAGGAGGAGAAGAAGGACCTCAAGGACCTCACCGGCAAGCTCTTCGCCACCCTCGACGG
GGTAAGAAACCTACCATCTCGCAATTTCAGCTATTACCTTATGTCTCTTCAGAAACATGGCCATCTTAATTCTTACTGCA
TCAAACCTGAACATTTTCTCAAGAAGAATT---GCAGGACTAACAGGTGTGAGCTTCTCCATTTTGTTTGCAGCTTGACC
ATGCAGCCAAGATCAAGAGCCCCACCGAGGCCGAGAAGTACTACGGCGAGACCAAGACTGTTCTCGGCGATGTCCTCGCC
AAGCTAGGCTAGATGGATCCGCATAATGGCCGTGTTGCTTTCAGGCCTTTTATGTTTGTTCATATTTGGAAGCCGGCAAT
GTAACTTCCCTGTTGATAATATGTCAACAAGCACTTAAGTATGATTCTATCTTGAG------------------------
--ATTCAGTCATATGAAGAGTAAACATTAAGACAAACTGCGCACAAATCCGATGTAACAACGAATAGTAACTTGCAGTT-
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--------AGAGCTCAACAGCCACGAGTACACAGTTTAGTCCAACCGAATAATTCATCCAAATCTTCTTTTGCTTTTTTA
GTTATTAATATTAATTCCCAGTC-------AGTAAACACCGTGCCAAATTTTTTTT-------AGAGGGGTTTCCCCACG
ATTTTCATTAAGAAAACCATATAGAAGTTCATACAAGCATCAGCCTAGTCATCCGGGACATATCCCAAACTGCTTGATCA
ACGGGAACAGCAAAGACCAGCTAAACA--------GGCTTAAATCTAGAACCACAGCTACCAACATCTCCAAAAGAGGGC
TACAAGTTCCAAACCAATGACAACAATGACGTGCCAGGTATTTGAGATCTA-----------------------------
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-----------------ACAGAAATCAGCTACCCAATGCTACAACTCCAGCTGATAAGTGTTTATCCTGTCACGAATATA
TTATTTCGACATTTCAGTTGAATGGGCTAGAAAGACTTGAGAAGAGAACACCTCAATCCTGACACTTAAGAATTCAGTGC
TTGTACAAAACTTCCACGAAATTAACAAGTCATTGCAACACCGAGATGTGCTCCGGGTAGATGGTAGCCTTGACAGTTAG
GCCTAAGATACACTGCAGTGTTCTGAGAAAAAGGGGTCA-TTGACTTGCAAGATATTCTCCCCTGTTTATATGAAATGAA
AACCTTCCATTGTTTTGTCAAGGACATCAATGTTTCTCTTCCTTTTTT-ATCTGCAAGAAAAGGAGTATCTCAGTTCTAA
CATAACTTTGGGCTAGAAAATGGCCCATCTGAAATTGATTTTTTAAGTTGTAGTCGTATGTGAATAAGTGCAACATG
>chr2B_167
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------GCGCCCTACTAGGCCACAACTTCACGACCACCTGGACAATTGAGGTCAGGGTTGAATCCATTGCAAACCCTAAG
ACCCTAAGCTTCCTCATAGGATGTCGGCGACAAAAAAGAAAACCAATGACATTGGCGGAGGTGTTGGCGCCAATCTTAGG
AAGTCGGGTGAGGAATGGTCTCTCTAGCTCACATTGTGATCTAT-----CGATGCAAGTCCGCCACATCGCCGGTGAAAT
AGGGCGAGAAACATAGATTAGGTCGACGCGAATCTGAAAAATAGACTGCGACTCTTGAGTTGTGTTGTGGTAAACTTACT
TTTTATAGTCTTTTCATGAGAAAACAACAATTGAATATAGGGAAAATCTGTTAAAACAACTTATAACTC--AATAAAACT
TGGTTGGACTAATGAGTTACTATAATCCATCGCAATGATTAATGCAGTG-ATGTGAAGTGAAATTTCAAATGCTATGCTG
GTAAAGAAATCGGCCATGGTGTTTGCTGGGAAAAGAAATTATCCAGATATAACAAAGTGACAAAACAAGGAAATCTTACT
GGCCAACTGAAGCCCAAGCACCGTCGACACATGTCTGGCACTCATTGGCCAGGGCGCAATCCAAATGGAGGTCAGGCGAT
GCAGCATGCCACAAGCCCGCGCCACACGGCGCGCGCGCATTGGCCGCGAACTTATCCAGTCAGATAAGGTTTCCCGCCGC
AAAGGACAGCAACACGTTACACGTCCTCCTCATATATTTTTGCCATTCGATCGAGAGATCGCTAGCTTCTCAAGAGGGAT
AAGAGAGAAACACAGGGCAAGAAGAGAAGAGAGAAGCAAAGCTTGAGATGGCGCAAACCATGGCGTCCATGACCGGCCTG
TCGCAGGGCGTGCGTCTCCCAGGCCCGACCGGCAGGCGCGCCAGCAGGTTCACCGTGAGGGCGTCGTCGGCGGAGGCGGA
GGCCGCCGGCCGCCGCGCGGTCCTTGGTCTCATGGCCAGCGGAGTCGTCGGCAGCGCGTTCGCTCAGGTGGTGCACGCCG
GCACCGTCGCGGCCATCAAGGTTGGCCCACCGCCGCCGCTCTCCGGTGGACTCCGTGAGTGCCTCCAGCTGCTCGTACAT
CATCTACCATACTATGCTCGCTTTAGTAGACTATATATATATAATG-----------ATTTTACGCCTGATCTGATGGA-
TGATTTGGGTGTGTGT--TCAGCCGGCACGGACAACTCCGACGAGGCAAGGGACTTCGACCTGCCCCTGAAGAACCGGTT
CTACCTGCAGCCGCTGCCACCGGCGGAGGCGGCGGTCCGGGCCAAGGAGTCGGCCCAGGACATCCTCAACCTCAAGCCGC
TCATCGACAAGAAGCAATGGCCGTACGTCATGAACGACCTCCGCCTCAGGGCCTCCTACCTACGCTATGACCTCAAGACC
GTCATCTCCTCCAAGACCACCAAGGAGGAGAAGAAGGACCTCAAGGACCTCACCGGCAAGCTCTTCGCCACCCTCGACGG
GGTAAGAAACCTACCATCTCGCAATTTCAGC---TACCTTATGTCTCTTCAGAAACATGGCCATCTTAATTCTTACTGCA
TCAAACCTGAGCATTTTCTCAAGAAGAATT---GCAGGACTAACAGGTGTGAGCTTCTCCGTTTTGTTTGCAGCTTGACC
ATGCAGCCAAGATCAAGAGCCCCACCGAGGCCGAGAAGTACTACGGCGAGACCAAGACTGTTCTCGGCGATGTCCTCGCC
AAGCTAGGCTAGATGGATCCACATAATGGCCGTGCTGCTTTCAGGCCTTTTATGTTTGTTCATATTTGGAAGCCGGCAAT
GTAACTTCCCTGTTGATAATATGTCAACAAGCACTTAAGTATGATTCTATCTTGAGTCTTTCACAGATGAAATCACAAGC
AGATTCAGTCATATGAAGAGTAAACATTAAGACAAACTGCGCACAAATCCGATGTAATAATAAATACTCCCTCCGTTCCA
AATTACTCGTCGTGGTTTTAGTTCAAATTTGAACTTTTTGAACTAAAACCACGACGAGTAATTTGGAAAGGAGGGAGTAA
CTTAGTTAAGAGCCCAACAGCCAGAAGT--ACAGTTTACTCCAACCCAATTATTCATCCAAATCTTCTTTCGCTTTTTTA
GTTATTAGTATTAGTTCCCAGTCAGTGCTAAGTAAACACCGTGCCAAGTTTTTTTTTTTTTTGAGAGGGGTTTCCCCACG
ATTTTCATTAAGAAG-CCATATAGAAGTTCATACAAGCATCAGCCTAGTCATCTGGGACATACCCCAAACTGCTAGATCA
ACGGGAACAGCAAAGACCAGCTAAACATACCACCAGGCGTACATCTAAAACCACAGCTACCAACATCTCCAAAAGAGGGC
TACAAGTTCCAAACCAATGACAGCAATGACGTGCCAAGTATTTGAGATGTA-----------------------------
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-----------------ACAGAAATCAGCTAGCAGATGCTACAACTCCAGCTGATAAGCGTTTATCCTGTCAGGCATAGA
TTATTTCGACATTTCAGTTGAATGGGCTAGAAGAACTTGGGAAGAGAACACCTCAATCCTGACACTTACAAATTCAGTGC
TTGTACAAAACTTCCACGAAATTAACAAGTCATTGCAACACAGAGATGTGCTCCGGGTAGATGGTAGCCTTGACAGTTAG
GCCTAAGATACACTGC--TGTTCTGAGAAAAAGGGGTCA-CTGACTTGCAAGATATTCTCCCCTGTTTATATGAAATGAA
AACCTTCCATTGTTTTGTCAAGGACATCAATGTTTCTCTTCCTTTTTTTATCTGCAAGAAAAGGAGTATCTCAGTTCTAA
CATAACTTT-GGCTAGAAAATGGCCTATCTGAAATTGATTCTTTAAGTTGTAGTCGTATGTGAATAAGTGTAACATG
>chr2D_269
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----------------------------G----AAAAGAATACCAATGACATTGGCGGAGGTGTTGGCACTAATCTTAGG
AAGTCGGGTGAGGAA-GATCTCTCTAGCTCACATTGTGATCGATTAGACCGATGCAAATCTGCAACATCGCCAACGAAAT
AGGGAGACAAACATCAGTTAATCGATGCGAACCCAAAAAAAAAAACTATGGCTCTTCAGTTGTGTTGTGGTAAACTTAC-
TTTTATAGTCTTTTCATGAGAAAACAACAAGTGAATATGGGGAAAATCTGCTAAAAACAACTTAACTCAATAATAAAAGT
GGGTTACACTAATGGGCTAGTATAATCCATGGCGATGATTAATGCAGTGCATGTGAAGTGAAAATTCAAATGCTATGCTG
GTAAAGAAATCGT-CATGGTGTTTGCTGGGAAAAGAAATTATCCAGATATAACAAAGTGACAAAACAAGGAAATCTTACT
GGCCAACTGAAGCCCAAC------------------------CATTGGCCAGGGCGCAATCCAAATGGAGGTCAGGCGAT
GCAGCATGCCACAAGCCCGTGCCACACGGCGCGCGCGCATTGGCCGCGAACTTATCCAGTCAGATAAGGTTTCGCGCCGC
AAAGGACAGCGACACGTTACACGTCCTCCTCATATATTTTTGCCAGTGGATCGAGAGATCGCTAGCTTCTCAAGAGGGAT
AAGAGAGAAACACAGAGCAAGAAGAGAAGAGAGAAGCAAAGCTTGAGATGGCGCAAACCATGGCGTCCATGACCGGCCTG
TCGCAGGGCGTGCGTCTCCCAGGCCCGGCCGGCAGGCGCGCCAGCAGGTTCATCGTGAGGGCGTCGTCGGCGGAGGCGGA
GGCCGCCGGCCGCCGCGCGGTCCTTGGCCTCATGGCCAGCGGAGTCGTCGGCAGCGCGTTCGCTCAGGTGGTGCACGCCG
GCACCGTCGCGGCCATCAAGGTTGGCCCGCCGCCGCCGCTCTCCGGTGGACTCCGTGAGTGCCTCCAGCTGCTCGTACAT
CATC-ACTATACTGTACTCGCTTTAGTAGACTAC---TATATAATG-----------ATTTTACGGCTGATCTGATGGAA
TGATTTGGGTGTGTGT--TCAGCCGGAACGGACAACTCCGACGAGGCAAGGGACTTCGACCTGCCCCTGAAGAACCGGTT
CTACCTGCAGCCGCTGCCACCGGCGGAGGCGGCGGTCCGGGCCAAGGAGTCGGCCCAGGACATCCTCAACCTCAAGCCGC
TCATCGACAAGAAGCAATGGCCGTACGTCATGAACGACCTCCGCCTGAGGGCCTCCTACCTGCGCTACGACCTCAAGACC
GTCATCTCCTCCAAGACCACCAAGGAGGAAAAGAAGGACCTCAAGGACCTCACCGGCAAGCTCTTCGCCACCCTCGACGG
GGTAAGAAACCTACCATCTCGCAGTTTCAGC---TACCTTG----------------------------------CTGCA
TCAAACCTGAACATTTTCACAAGAAGAAGAATCGCAGGACTAACAGGTTTTTCTTTC----------TTGCAGCTTGACC
ATGCAGCCAAGATCAAGAGCCCCACCGAGGCCGAGAAGTACTACGGAGAGACCAAGACCGTTCTTGGCGATGTCCTCGCC
AAGCTAGGCTAGATGGATCCGCATAATGGCCGTGTTGCTTTCAGGCCTTTTATGTTTGTTCATATTTGGAAGCCGGCAAT
GTAACTTCCCTGTTGATAATATGTCAACAAGCACT-AAGTATGATTCTATATTGAGTCTTTCACAGGTGAAATCACAAGC
AGATTCAGTCATATGAAGAGTAAACATTAAGACAAACTCCACACAGATC-----------CGAATAGTAACTTACAGTT-
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--------AGAGCCCAACAGCCATG-------AGTTTAGTCCAACTGAATAATTCATCCAAATCTTCTTTTGATTTTTTA
GTTATTAATATTAATTCCCACTCAGTGCTAAGTAAACACCATGCCAAGGTCTTTTTCC-TTTGGGACTGGTTTCCGCATG
ATTTCCGTTAAGAAGACCATATAGAAGTTCATACAAGCATCAGCCTAGTCATCTGGGACATATCCCAAACTGCTAGATCA
ACGGGAACAGCAAAGACCAGCTAAACATAGTACCAGGCTTACATCTAAAACCACAGCTACCAACATCTCCAAAAGAGGGC
TACAAGTTCCAAACCAATGACAGCAATGACGTGCCAAGTATTTGAGATGTACTCCCTCCGTTCCTAAATATTTGTCTTTT
TAGAGATTTCAAATGGACTATCACATACAGATGTATATAGACATATTTCACTTGTTGAAATCTTTAGAAAGACAAATATT
TTGGAACGGAGGGAGTAACAGAAATCAGCTACCAAATGCTACAACTCCAGCTGATAAGTGTTTATCCTGTCAGGAATATA
TTATTTCGACATTTCAGTTGAATGGGCTAGAAAGACTTGAGAAGAGAACACCTCAATCCTGACACTTAAGAATTCAGTGC
TTGTACAAAACTTCCACGAAATTAACAAGTCATTGCAACACCGAGATGTGCTCCGGGTAGATGGTAGCCTTGACAGTTAG
GCCTAAGATACACTGCAGTGTTCTGAGAAAAAGGGGTCATTTGACTTGCAAGATATTCTCCCCTGTTTATATGAAATGAA
AACCTTCCATTGTTTTG-CAAGGACATCAATATTTCTCTTCCTTTTTT-ATCTGCAAGAAAAGGAGTATCTCAGTTCTAA
CGTAACTTTGGGCAAGAAAATGGCCCATCTGAAATTGATTTTTTAAGTTGTAGTCGTATGTGAATAAGTGCAACATG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS--------S-------S-------S---S----S-----S------SS-S----------------S-------
-----------S-S---------SS-------------------------------SS-------------------S--
----------------------------------------S-------SS------------------------------
------------------S--S--------------S------------------S------------------------
-----------------------------------------------S--------------------------------
-------------------------------S------------------------------------------------
S-------------------------------------------------------------------------------
-------------------------------------S-----------------------------------------S
-----------------S--------------------------------------------------------------
-S--------------S-------------------------S-------------------------------------
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-----------------------------------------------------------------------------S--
---------------------------------------------------S----------------------------
----------------------------S----------------------------------------S----------
-------------------------SSSS-SS---SSSSSS--SS-SSSSSSSSSSS-----------------------
----------------SS--------------------S-----------------------------------------
------------------------------------S-------------------------------------------
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-------------------------------SSS----------------------------------------------
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---------------------------------------------------------S---------------S------
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-------------S---------S----SS--------------------------------------------------
-----------------------------------------------S--------------------------------
--------------S--------------------------------------S--------------------S-----
-----------------------------------------S-----S--------------------------------
----------------------S-------------S-----------S-------------------------------
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---------------------------------S--------------------------------------S-------
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>forward_758
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------------------CACCGTCGACACATGTCTGT------------------------------------------
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>reverse_2254
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-------------TCAACAGCCACGAGTACACA-----------------------------------------------
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