>input_sequence_65563
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------------------------ATGGTGAAGCTGGCGACGGCGAGGGAGGCGCGGCTGTACGGGCCGGCGCTGGCGGT
GCGGCGGTGGGAGTACACCAACGCCGGCGCGTACATGTTCGGGACCCTGCTCCTGGCCGCGGGGCTCGCGGCGCTGTGCG
CGTCCGAGGGC---------------------------------------------------------------------
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-----------------------------------------------------------------------------GGC
GTCGGCGCCAGGGACGCCGGGCTCGCCGTGGCCGGCGTGGCGCTGGCCGTGGTGGCGGCCGTGAACGCGCACGACCTGGG
CGCGCACCTCGCCGGCGTGGACTGCCGCGTCGGGCTCGCCCGGTTCGACCCCCAGCTCGGCCTCGTCGAGTTCCTCGCGC
CCGCGCTCCACGCCGCCGGCTGCGTCCTCGCCATCGTCGGCCTCGCGCTGCAGCTCTTCTCACAGGTTCGTGAGTGTCGA
CCGTCGACAACCACAATCACGCATGG-GCTCGCCGATAACATTATCCGCTGACCGACTGCTGCTTTTTCG-------TGC
TGATGGTG-GAACAGGGCGACAGGCTAGAGAGGCGCGCGGCGGACGCGCTGCTGGCGGGCGCGGCGCTCTGGCTGCTGGG
CTCCGTGCTCAGCTCGTGCCAGGTCTACGAGCGCGCCGACGGCCGCGCGCAGCTGCTGCAGTCCAGCGTGCAGGTGCCCG
TCCTCCTCGGCAGCCTGCTCTTCCTCGTCGCCGCCGTCCTCCACCGCCGCCGTGAGCCCGCCCTGGCAGGCGAGAGGGAA
------AGCGAGAGCGAGAGGTGGATTAGCCTGTGCGGGAGCGTGCTGTGGGTGGCGGGCGCACTGTTCAACGCGCTCAA
GGTGTTCGTGATGCACCAGAGCGACGCGCCGCGGCTCGAGAAGCTCCGCGGCGGCGCGCAGGAGCGGCTCGCCCGGGACC
GTGAGGGCCGCGTGCCGCTGGTGTGGAGGTCGGCGGCGCCGCCCACCGAGCTGCGCTGA---------------------
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>chr1B_1_TraesCS1B01G461700
TCGCGCTGAAGCGTCGGGAGCTGTTCGTTGGTCCAGTCGTGCAGCGTATTGAGCATGCTCCATCCAGTGCAGCGCTGGAT
CAGGACAAAGCTCAAAAATAAAAGAAGGGTCTGTCTAGAACTTAGTTGACCAAGTCTCAGTCGAGTGACGTCACTATAGT
TTTTTTGCTGCAAGCGGCACGGCTAGATGCTATAATCGATGATGAAAAATGTTGCAACGGTTTTACAAGCAATGAAAATT
GGTGCTGCAGCCGGTGTGACTAAAATGCTACAACCCTGAATGATAAATGTTACGACCGGTGAGACGATATGCTACAATCA
ATGAGGGATAACCTGCTACAACCAAAAAGACGAATGCTGCAACCGGTATAAAAAAAAGTTACAACCATTGAGAAAAAATG
TTGCATGATCGACTGAGACTTGATTAAATCTCAGTCGACTGATTTTTAGCAAGCCCGGTAAAAGAATATTATTACTTGCA
TGTGACACAATTCAAACCATACGACACTACATACAGAAGCTAAAAAAACACACTACATCGTACATACTGTCATACGCCAT
ATCTGTTTATATATACAAACACTACTACGTACTAGGAGTACAATTAAAATACAAGTAATCCATACACTGAGATTTAATC-
--------AAGTGACGCGAGCAGTCAGACCTCCAAACGAACATGTTTGAATCGAAGTTGGCAAGTGAGACC---------
----------------------------------------------CGCATGGCATCCAGGTGCTCTGTCCCCGTTTCCC
TTCGTCAACCTCCACCTGTGAGGGGAGCACGGGCCACCTGTTCGGCCAGGCGCGCCATGCAAAGCGCCACGCACACTCGT
TCCAAACTCCGCCTACGCATCCCAACTTCCCAAGTTCCCAACCCACCGCATTGACTCTCGATCGCGGCGGTTTCTCGCTA
CTTTACTCCCCGCTCGCACCGCTCGCCGTCACGCGTCGACGGAGCCGCCGAGGGACTCTGCTTCGCTTGCATTCGGTCGG
TCGGTCGGTCGGTTGGTCGGGGCCATGGTGAAGCTGGCGACGGCGAGGGAGGCGCGGCTGTACGGGCCGGCGCTGGCGGT
GCGGCGGTGGGAGTACACCAACGCCGGCGCGTACATGTTCGGGACCCTGCTCCTGGCCGCGGGGCTCGCGGCGCTGTGCG
CGTCCGAGGGC---------------------------------------------------------------------
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-----------------------------------------------------------------------------GGC
GTCGGCGCCAGGGACGCCGGGCTCGCCGTGGCCGGCGTGGCGCTGGCCGTGGTGGCGGCCGTGAACGCGCACGACCTGGG
CGCGCACCTCGCCGGCGTGGACTGCCGCGTCGGGCTCGCCCGGTTCGACCCCCAGCTCGGCCTCGTCGAGTTCCTCGCGC
CCGCGCTCCACGCCGCCGGCTGCGTCCTCGCCATCGTCGGCCTCGCGCTGCAGCTCTTCTCACAGGTTCGTGAGTGTCGA
CCGTCGACAACCACAATCACGCATGG-GCTCGCCGATAACATTATCCGCTGACCGACTGCTGCTTTTTCG-------TGC
TGATGGTG-GAACAGGGCGACAGGCTAGAGAGGCGCGCGGCGGACGCGCTGCTGGCGGGCGCGGCGCTCTGGCTGCTGGG
CTCCGTGCTCAGCTCGTGCCAGGTCTACGAGCGCGCCGACGGCCGCGCGCAGCTGCTGCAGTCCAGCGTGCAGGTGCCCG
TCCTCCTCGGCAGCCTGCTCTTCCTCGTCGCCGCCGTCCTCCACCGCCGCCGTGAGCCCGCCCTGGCAGGCGAGAGGGAA
------AGCGAGAGCGAGAGGTGGATTAGCCTGTGCGGGAGCGTGCTGTGGGTGGCGGGCGCACTGTTCAACGCGCTCAA
GGTGTTCGTGATGCACCAGAGCGACGCGCCGCGGCTCGAGAAGCTCCGCGGCGGCGCGCAGGAGCGGCTCGCCCGGGACC
GTGAGGGCCGCGTGCCGCTGGTGTGGAGGTCGGCGGCGCCGCCCACCGAGCTGCGCTGACAGTCCTGGAGCCCAAGCCCA
AGCCGGCGGCTCAAGATGGTAATTAAGGAGGCTAGTGCACCAAGATATACCAGTGCGGCCGGCGCCAGAGAAACTATACT
CTAGTATATGTCTAGCAGACTTCTCCGCTGTTTCTTCTCTTCTTGTCTGGCATTAGTATAGTGTAAGAACTTTTAGCCCC
TTTTCAATGGAAAAATTAAGAACTCCATGTTTCAAACAGAAATTTCGTACAATTAACATGGACCCGGAGGGAGTAATAAC
TTTTTTTAGAGAAATGTTTCTTCATACCGTTTTGTAGAACTCATTTAGATGATGAGATATAATTTGGTCCCATTCACCTT
TTATAGTCATTGAATGTGATGCTATAAGACGCGTGTGTACTGATGTGAGTGTATCTGTTCTTGTTTTTAAAGTGAATGAG
ACCAAATTATATATCATTTAGATGAGATCTAGATACCTTTCTTCATATTCCTTAGAGCAAATACAATAAGCTTATGTAAG
CCGGGGCATGTCCACCGCCGGGCGCTTGTGATCGGCGCCAGGATCTAATTCCCGTCCGTTTCAGCCACCTAGGCCCCGGC
GCTTCGTCCAAATTCTCTGTACGCCAGGTGGGCCTTTAGTTGTTTTTTAATCATCTAAGCGTCTATAATTGCTCACTGCG
TTGGAGGATAGGCTTTTAGGCTAGCCATAATGGGAGTAACTTAACTAGTAACATAGCGTACTTCAAAAAAAATTCACTTC
AAGAAATTTTTGTTTATATGGCATGTAGTTAATGAGAGGTGGTAACATAATATGTTACTGTAATATAGCGGTTTTCAAGA
CAAGATGAGTCTACAAGCTAATAAATGAAGTTTTTTATGACGCTAATACTATGTTACTTTGCATTATAAAGGTAGTAACT
TGGACTAGTATCATATACATGACACTAGTATAAGTTACTCCCCCTATGACCAGCCTTAGGTGGCGATTCGTGTCGTGAAA
ATCCCAAATCCTTCCGAAA
>chr1A_583
TACGTAC-------------------------------------------------------------------------
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-----------------------------TACTAGGAGTACTATTAAAATACAAGTAATCCATACACTGATACACAAATG
CAAATTAAAAATGACGCAAGCAGTCAGACCTCGAGACAAACATGTTTGAATCGAAGTTGGCAAGTGAGACCCGGGTTCTC
CTCTGCCCCGGTGAGCAAAAGCAGAGCAGGGGGCATTGCCACATGTCGCATGGCATCCAGGTGCTCTGTCCCCGTTTCCC
TTCGTCAACT------------------ACGCACCACCTGTCCGTCCAGACGCGCCATGCACGGCGCCACGCACACTCGT
TCCAAACTCCGCCTACGCATCCCAG--------GTTCCCAACCCACCGCATTGACTCTCGATCGCGGCGGTTTCTCGCTA
CTTTACTCCCCACTCGCACCGCTCGCCGTGACGCGTCGACGGAGCCGCCGA-----------------------------
--------------------GGCCATGGTGAAGCTGGCGACGGCGAGGGAGGCGCGGCTGTACGGGCCGGCGCTGGCGGT
GCGGCGGTGGGAGTACATCAACGCCGGCGCGTACATGTTCGGGACCCTGCTCCTGGCCACGGGGCTCGCGGCGCTGTGCG
CGTCCGAGGGC---------------------------------------------------------------------
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-----------------------------------------------------------------------------GGC
GCCGGCGCCACGGACGCGGGACTCGCCGTGGCCGCCGTGGCGCTGGCGGTGGTGGCGGCCGTGAACGCGCACGACCTGGG
CGCGCACCTCGCCGGCGTGGACTGCCGCGTCGGGCTCGCCCGGTTCGACCCCCAGCTCGGCCTCGTCGAGCTCCTCGCGC
CCGCGCTCCACGCCGCCGGCTGCGTCCTCGCCATCGTCGGCCTCGCGCTGCAGCTCTTCTCCCAGGTTCGTTAGTGTCAA
CCGTCGGCAAACGCAT---------GGGC-CGCCGACCGCCG---CCGTTAACTAACTACTGCTCGTTGTGT-TTTCTGC
TGATGGTCTGAACAGGGCGAGAAGCTGGAGAGGCGCGCGGCCGACGCGCTGCTGGCGGGCGCGGTGCTCTGGCTGCTGGG
CTCCGTGCTCAGCTCATGTCAGGTGTACGAGCGCGCTGACGGCCGCGCGCAGCTGCTGCAGTCCAGCGTGCAGGTGCCCG
TCCTCCTCGGCAGCCTGCTCTTCCTCGTCGCCGCCGCCCTCCACCGCCGCCGTGAGCCCACCCTGGCAGGCAAGGGCGAA
AGCCAGAGCGAGAGCGAGGGGTGGATTAGCCTGTGCGGGAGCGTGCTGTGGGTGGCGGGTGCACTGTTCAACGTGCTGAA
AGTGTTTGTCATGCACCAGAGCGACGCGCCGCGGCTCGAGAAGCTCCGCGGCGGCGCGCAGGAGCGGCTCGCCCGGGACC
GCGAGGGCCGCGTGCCGCTGGTCTGGAGGTCGGCGGCGCCGCCGACCGAGCTGCGCTGACAGT-----------------
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>chr1D_703
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----------------------------------------------CGCATGGCATCCAGGTGCTCTGTCCCCGTTTCCC
TTCGTCAATGTCCACCTGTGAGGGGAGCACGGACCACCTGTAGGGCCAGACGCGCCATGCAAAGCGCCACGCACACTCGT
TCCAAACTCCGCCTACGCATCCCAA--------GTTCCCAACCCACCGCATTGACTCTCGATCGCGGCGGTTTCTCGCTA
CTTTACTTTCCACTCGCACCGCTCGCCGTGACGCGTCGACGGAGCCGCCGAGGGAGTCTGCCCCGCTTGCATC-------
-CGGTCGGTGGGTCGGTCGGGGCCATGGTGAAGCTGGCGACGGCGAGGGAGGCGCGGCTGTACGGGCCGGCGCTGGCGGT
GCGGCGGTGGGAGTACATCAACGCCGGCGCGTACATGTTCGGCACCCTGCTCCTGGCCGCGGGGCTCGCGGCGCTGTGCG
CGTCCGAGGGC---------------------------------------------------------------------
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-----------------------------------------------------------------------------GGC
GTCGGCGCCACGGACGCCGGGCTCGCCGTGGCCGGCGTGGCGCTGGCGGTGGTGGCGGCCGTGAACGCGCACGACCTGGG
CGCGCACCTCGCCGGCGTGGACTGCCGCGTCGGGCTCGCCCGGTTCGACCCCCAGCTCGGCATCGTCGAGTTCCTCGCGC
CCGCGCTCCATGCCGCAGGCTGCGTCCTCGCCATCGTCGGCCTCGCGCTGCAGCTCTTCTCCCAGGTGAGTGAGTGTCGA
CCGTCGGCAAACGCAAGGACGCATGG-GC-CGCTGATCGCCG---CCGGTGACTAACTACTGCTCGTTGTGT-ATTCTGC
TGGTGGTCTGAACAGGGCGACAAGCTGGAGAGGCGCGCTGCCGACGCGCTGCTGGCGGGCGCGGCACTGTGGCTGCTGGG
CTCGGTGCTCAGCTCGTGCCAGGTGTACGAGCGCGCCGACGGCCGCGCGCAGCTGCTGCAGTCCAGCGTGCAGGTCCCCG
TCCTCCTCGGCAGCCTGCTCTTCCTCGTCGCCGCCGCCCTCCACCGCCGGCGTGAGCCCACCCTGCCAGGCGAGAGGGAA
------AGCGAGAGCGAGAGGTGGATTAGCCTGTGCGGGAGCGTGCTGTGGGTGGCGGGCGCACTGTTCAACGTGCTCAA
GGTGTTCGTGATGCACCAGAGCGACGCGCCGCGGCTCGAGAAGCTCCGCGGCGGCGCGCAGGAGCGGCTCGCCCGGGACC
GTGAGGGCCGCGTGCCGCTGGTCTGGAGGTCGGCGGCGC---------AGCTGCGCTGACGGTCATGGAGCCCAAGCCCA
AGCCG---------------------------------------------------------------------------
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>chr4D_979
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--GGTCGGTGGGTCGGTCGGGGCCATGGTGAAGCTGGCGACGGCGAGGGAGGCGCGGCTGTACGGGCAGGCGCTGGCGGT
GCGGTGGTGGGAGTACATCAACGCCGGCGCGTACATGTTCGGCACCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGC
GTCGGCGCCACGGACGCCGGGCTCGCCGTGGCTGGCGTGGCGCTGGCGGTGGTGGCGGCCGTGAACGCGCACGACCTGGG
CACGCACCTCGCCGGCGTGGACTGCCACGTCGGGCTCGCCCGGTTCGACCCCCAGCTCGGCATCGTCGAGTTCCTCGCGC
CCGCGCTCCATGCCGCAGGCTGCGTCCTCGCCATCGTCAGCCTCGCGCTGCAGCTCTTCTCCCAGGTTCGTGAGTGTCGA
CCGTCGGCAAACGCAT---------G-GC-CGCCGATCACCG---CCGGTGACTAACTACTGCTCGTTGTGTGTTTCTGC
TGATGGTCTGAACAGGGCGACAAGCTGGAGAGGCGCGCCGCGG-------------------------------------
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>SNPs
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------S----------------------------S-SSS--SS-
----------S------S--------------S-S--S------------------------------------------
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---------S----------------------S--------S-------S------------------------------
-------------------------SSSSSSSS-----------------------------------------------
-----------S-----------------S-------------------------S-----SS---------SSSSSSSS
S--------S---S------------------------------------------------------------------
-----------------S--------------------------------------------------------------
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----------S------------------------------------S--------------------------------
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-------------------------------------------------------------S------------------
------S---S-S---SS-----------S-------S--SSSSS---S----SS---S-----SS--SS----------
-------S--------------S---S-----------------------------------------------------
------------------------S-------------------------------------------------------
------------------------------------S----------------------S--------------------
-------------------------------------------------------------------------S------
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----------------------S--------------------S--------------------S---------------
-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS
>forward_252
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------------------------------------------------------------------------TGAAAATT
GGTGCTGCAGCC--------------------------------------------------------------------
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>reverse_1742
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-------------------------------------------------------------ACAGGTTCGTGAGTGTCGA
C-------------------------------------------------------------------------------
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>forward_678
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------------------AGCAGTCAGACCTCCAAACG------------------------------------------
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>reverse_2362
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-----------------------------------------AAGATATACCAGTGCGGCCG-------------------
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