>input_sequence_65525
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----ATGGAGTGGACACCAAAGCAGCAGGCTCTCGGCGGCCTCGGCCTCGCCGGCGTCTGCCGGGAGACCTGCCATGTGA
TCCACCGCGCCATGCTCCCCAACTTCGTCAACCTGGGTCCCCCGCTGCTCTCCGCGCTCTTGCTCGCCAGCTCCGCCGCC
GTCC-GCGCCCTCTGCTCCCGCGTCCTCGCGGACCTCC---ACGACCACGACGGCCCCAGCCTCCTCTGCCTCGTCACGG
ACCGGCTCGCCTTCTTCCTCTTCGTGGCCGTCTCCATCGGCCTTGTCCTCCTGCTCCTGCTCCTCTG---CGCCGCCGCC
TA---CCTCTTCTGTGTCGTCTCCCTCTACTCCACCGGAGGCGACCTCCGCGCCGCCGATCGCGTCCTCAGAGGGTTCCC
CACGGTCCCGCTCACGCGGTTCGTCTGCACCTTCCTCCTCGCCGCGGTCCC---CTTCTTCGTGATCTGCACCTCCCTCT
TCGTCGCCGCCTT---------------GTTCCAGCCCCAGGAGCCGCTCGGCG---CTGC------GGACAAGATCATG
CTGCCGCTGCAGCTGCTGGGATGGGCCGCGTTCCTCGCCAGCGCGGCGTACGTCGCCGTGGTGTGCCAGCTGGCCTGCGT
GGTGTCCCTGCTCGAGGACGCAGTGCTCTTCGGCGCCCTGCGCAAGAGCCGCGCGCTCGTCGTGGGCAAGTTCTGGGCGG
CCGCCGGCGTCTTCGTCACGCTTGACGGCTGCATCTTTGCCGTGCTGGTGGCTTTCCCCGTTCTGGTGGTGGACGATGCG
CTGGGCCTCGGCCTCGGGTTCCAGGTGGCCGCCGGGGTGGCGATGGCAGTGGCTCTATGCGCGGTGGTGCTGTTGACGCT
GGTGGCGCAGCCGGTGGTCTACCTGG------------------------------------------------------
-------------TGTGCAAGAAC--------------------------------------------------------
CACCACCACTTGGTCGTCGACAAGGTTCACCTCGACTGA-----------------------------------------
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------------------------------------------------------------------------------
>chr1B_1_TraesCS1B01G099400
GATGCCTTGCTTGTGCGCTCTCCCGTGAACTCTCTCTGCCCCGTCACGGCCACCAACGGGCGAGCATTTCGATGTTCATT
CCCCTTCCCCTTTTC-----------------------------------------------------------------
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-----------------------------------------------GTTCCTCCCAGTCTGGAATTTTTGTCATATAAG
ACCATCTATGCTTTCGTATTGTCAAAAAAGACCACACCCAGATCGTATTGACAAAAAGGACCACGTACACTGTGGCAGCA
GGTCTGGCAGCCGACACGTGGCACCTGCCGCCACAGCAGCCGGCGGCAGGACTTGCCGCCACAGACGGCGGCGGCAGCTT
CTGTTTAACAGATTTTTCGCCTTTGCATCGATCCACAACGGAACGGAAAGGCTAGGTGGGCCCTGCCGCCATAGAGGGTG
ACGGCAGCTTCTTTTACTGTCGTGCGACGCAACATCTCATTGAGAAGGTACTCTGCGCCTAGCACTTAGCGGTGCGAGGA
AAATACATGGGCTGGGCAAGAATTAAACCAATCACTCTGCGCTGAAAAATCTCGCAATTAAGCCAACGACCTGACCCTAC
TCCACCATGCAGTCTCGGCCCACGTTCAACGCACTCTTGCCAATCAACGCTACTATCTTGGTAATTACTAACAACCAACG
AGCGGCTAACTAGCGCAGTAAAATGAGCTGCTGCCACCTTCTTTGACGGCATGGCTCACATGCCATCTCCGTTCTGTTAT
GTATCACTGTAGAGGCGGAAAACCTGTTACATGCAAGCTGCCACCGTCGGCTGTGGCGGCAGGTCCTGCCGCCAGCTGCT
GTGGCGGCAGGTGCCACGTGTCGGCTGCCGGACCTGCCGCCACAGTGCATGTGGTCTTTTTTGCCAATACAGTTTGGGTG
CGGTCTTTTCTGGCAATATAAATGTGTAGGTGGTCTTTTCTGACAAAAATTCCCCAGTCTGACCATTCTCTTTCCCCTTT
CCTTCACTT-C-------AGTAGCTCACTTTCCTTCTCCTCAACCACCACCTGGCC----TCTTCCCTACGTGCTCGCCG
ATCGATGGAGTGGACACCAAAGCAGCAGGCTCTCGGCGGCCTCGGCCTCGCCGGCGTCTGCCGGGAGACCTGCCATGTGA
TCCACCGCGCCATGCTCCCCAACTTCGTCAACCTGGGTCCCCCGCTGCTCTCCGCGCTCTTGCTCGCCAGCTCCGCCGCC
GTCC-GCGCCCTCTGCTCCCGCGTCCTCGCGGACCTCC---ACGACCACGACGGCCCCAGCCTCCTCTGCCTCGTCACGG
ACCGGCTCGCCTTCTTCCTCTTCGTGGCCGTCTCCATCGGCCTTGTCCTCCTGCTCCTGCTCCTCTG---CGCCGCCGCC
TA---CCTCTTCTGTGTCGTCTCCCTCTACTCCACCGGAGGCGACCTCCGCGCCGCCGATCGCGTCCTCAGAGGGTTCCC
CACGGTCCCGCTCACGCGGTTCGTCTGCACCTTCCTCCTCGCCGCGGTCCC---CTTCTTCGTGATCTGCACCTCCCTCT
TCGTCGCCGCCTT---------------GTTCCAGCCCCAGGAGCCGCTCGGCG---CTGC------GGACAAGATCATG
CTGCCGCTGCAGCTGCTGGGATGGGCCGCGTTCCTCGCCAGCGCGGCGTACGTCGCCGTGGTGTGCCAGCTGGCCTGCGT
GGTGTCCCTGCTCGAGGACGCAGTGCTCTTCGGCGCCCTGCGCAAGAGCCGCGCGCTCGTCGTGGGCAAGTTCTGGGCGG
CCGCCGGCGTCTTCGTCACGCTTGACGGCTGCATCTTTGCCGTGCTGGTGGCTTTCCCCGTTCTGGTGGTGGACGATGCG
CTGGGCCTCGGCCTCGGGTTCCAGGTGGCCGCCGGGGTGGCGATGGCAGTGGCTCTATGCGCGGTGGTGCTGTTGACGCT
GGTGGCGCAGCCGGTGGTCTACCTGG------------------------------------------------------
-------------TGTGCAAGAAC--------------------------------------------------------
CACCACCACTTGGTCGTCGACAAGGTTCACCTCGACTGAGT---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------ACGAGCGGCCCTCCGTCA----CACGGGCGTTGAGC
GGCTGCAGCCCGGC-AAGACGGAGCAGATTCCAGTAACTCTGACTAGCTA--GCTGCATCCTGTCCACGACTCCA---TG
GTAGCAACTTGAAGAAGATTTG-CTCAAGTAG---TACAGTAGCT------TAGTAGTATTCCCTCCGTTCGCTTTTATA
AGTCGTTTCAGACAGCTGAAAATGAACTGATT------------------------------------------------
-----------------------------------------------------TGCATGTTGTCTGAAATGT--------
----------CTTCAAGGACTTATAAAAGTGAACAGAGGGAGTAG-----------------TAGTAATAATAAGTTGCT
GTAGTCCTATGTTTATGTCAACTGTCGTCGT-----------GAGTTTATGTCTGATTATGACTGCACCGGATATG--CA
TGCTTGGGATTATGTATGTGTGTGTGTGAGGGTTTGTGAGACTGTGAGTAGGAGT----------AGCTAGTACGACTGT
TTAAGGTTGATAAATTTTGCATGAACCATGTGAGACAAATCAAGTGTATGTTCGTGCATGGCCAAAGCGTGTAATCTTGG
TCACATCATGTTTTTTTTTTTTGAAGCTTGGTCACATCATGTTTGCACAGATGTTTATTTACTTGCTCGTCATGTCATTA
TTAGTGTGACCCTGCCATCGTTTCATTTTTTTA-CTCAAAGAGAAGAAATTGCTTCAAGGGAATTGGTACAGTA--TCAT
TTTAGAAAATTATGTATTTAGCACAGTATGTGAAACTATAAGGATGCAACAAATATTTACCAAGGCAAACCCCTTCAAAT
GTTACAAAGAAG--------------------------------------------TTAGTCTGTCAAAGAAGAGGTCAA
TAATATGCCTGATATTGTCAGTTTATTTGTTTGCCAGATGTGGTTATTAGATAGCATCTTGATATTGCTTTCAAGATTAT
TAGTGTGTATGT------GTGTTTGGCTTGTCA---TTAAAATCTCAACCATCTATGATC-GTCCAGATATTCCATCTAG
CAACAAGTATGATCTCCAATGAATATGGGTGCTTAGAGCATCTACAGCTGGACATGGCAAATTCGGACCCTTAAACAC
>chr1D_25
------------------------GTGAACTCTCTCTGCCCCGTCACGGCCACCGACTGGCCAGCATTTTGATGTTCGTT
CCCCTTCCCCTGTTCCTCCCGACTAAGTTTTTTTACCGGTGGCGGGAGCTACCGGCACAGCTCCAGCCAATCACCTTGCA
CCACCGCACACTGTAGTTTATACCACATGCAGTATAACACTGTTTGCTCATATTTACTAAATGTTTGTATTTCACCACCC
TGGCCCACCACGTGATGTCATCCACATGCATGTATGTCAAGAATGTGACACCTCTCATCTCTTTTCCCTTACACAATAAA
TCCATACTTTTATTTCAGCTTTGCTAATTTAACTCGTCCGTATCTTTTAAACCATAATTTTATTAATGAAACTTTTTATA
TATATGAACTTGTGGCGTTCAGACCTTTAAAACAAGACCAATTTTGAATATATTTCAAACACGTTTGAATTTCAATGTTT
CAATCGATTTATTTCACTTCAACTATTTCAGTCAGTTGAAATTCTGATTTCATTTATTTCAAAAAAAAATTTGAATAATT
TCAAGCAATCGTTTCAGATAACAAATTCACAAATTATTTCACTCGGTTCAAGAATCCGGTTTCATTTTTTTCTTACAACC
ATTTCAATTATTTCAGACTTACTACACTTTTTCAAAATACTATTTCATTTACTTCGGATAAGTCTCCACTATTTCAAAAA
GAATGAGCTAATATATTTCAATAATTTCATAACATATTTCACTTTTTCAAAATACTTTTTATAGAAACACTACTTTGACC
CAAGCTGATTTCACTACAAACCCTTCACCCCATTTCAAAAACACATGTTTCACTCATTCCAAAACATAATTTCACAAAAA
AATGAAAACGCATTTCACTCATTGCTCTTGTTCTAAACAGCTCCAAACATCGTATTTACTTCAACTATTTCAAAAAATAG
ATTCACAAAAAATTTCACTCAATTCAAGAATCCAGTTTCAGTTTTTTCTAAAAACATTTCAAAAAAATTCAGATGTATTT
CACTTTTTTGAAAACCTTTTCACTTATTTTGGATAAGACTCCAGTATTTAAAAAAATGAGTTTATACATTTCAATAATTT
CATAACATATTTCACCTTTTCAAAAACATTTTCAAATTTTCAATCTTTTGAAACAAACTGATTTTAATACTAAAACCCTT
CACGCCTTTTAAAAAACACAAGTTTCACTCATTCCAAAAACTTAATTTCACTAATATTGAAAACCGATTTCAAATGAATT
GAAACATTCAAATTTAAACATTTCTGAAATGTATCAAATTGGTCTTATTATAGAGGGCTTAAGGCTAGGAATTCAATTAT
ATAAAAAGTTTCATAAAGGAGTTTATGGTTTAAAATATATCAATGATTTAAAAGAGCAAAGATGAAATAAAAGGGTACAT
TTAGTGTGTAAGAGAAGAGAGAGACTTTGACAACTTTTCCTGCCATGCATGCATTGTGGGGGCCAGGAGCCGTATATGGT
CTCCTATAGGCTTGGTATGAAAACAACCAATAATTAATTGGTGGACCCCCGCACGAATCATGATGCATATGTGGATGATG
GATGCTTCACCGGTAGCTCCCTTGACCGGTAAAAGAGACTTTGCGCTGTTCCTCCCAGTCTGCCCA--------------
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------------------------------------------------------------------------TCCTCTTT
CCTTCACTT-C-------AGTAGCTCACTTTCCTTCTCCTCAACCACCACC----CGGCCTCTTCCCTACGTGCTCGCCG
ATCGATGGAGTGGACACCAAAGCAGCAGGCTCTCGGCGGCCTCGGCCTCGCCGGCGTCTGCCGGGAGACCTGCCGTGTGA
TCCGCCGCGCCATGCTCCCCAACTTCGTCAACCTCGGTCCCCCGCTGCTCTCCGCGCTCTTGCTCGCCACCTCCGCCGCC
ATCC-GCGCCCTCTGCTCCCGCGTCCTCTCCGACCTCC---AC---CACGACGGCCCCGGCCTCCTCCGCCTCGTCACGG
ACCGGCTCGCCTTCTTCCTCCTCGTGGCCGTCTCCATCGGCGTCGTCCTCCTGCTCGTGCTCCTCTG---CGCCACCGCC
GCCTTCGTCTTCTGCATCGCCTCCCTCTACTGCACCGGAGGCGACCTCCGCGCCGCCGATCGCGTCCTCAGGGGGTTCCC
CACGTTCCCGCTCGCGCGGCTCGTCTACACGTTCCTCCTCTCCGCGGTCCC---CTTCCTCGTGATCTGCGCCTCCCTCT
CCGTCGCCGCCCT---------------GTTCCATCCCCAGGAGCTGCTTGGCTCTCCTCC------GGACAAGACCATG
CTGCCGCTGCAGCTGCTGGGATGGGCCGCATGCCTCGCCGGCGCGGCCTACGTCGCCGTGGTGTGCCAGCTGGCCTGCGT
GGTGTCCCTGCTCGAGGATGCCATGCTCTTCGGCGCCCTGCGCAAGAGCCGTGCGCTCGTCGCCGGCAAGTTCTGGGCGG
CCGCCGGCGTCTTCGGCACGCTCGACGGTTGCATCTTCGCCTTGGTGCTCGCTTTCCGGGCTCTGGTGGTGGACGATGCG
CTGGGCCTCGGCCTCGGGTTCCAGGTGGCCGCCGGGGCGGCGATGGCGGTGGCTCTGTGCGCGGTCGTGCTGTTGACGCT
GGTGGCGCAGCCGGTGGTGTACATGG------------------------------------------------------
-------------TGTGCAAGAAC--------------------------------------------------------
CACCACCACGAGGTCGTCGACAAGGTTCACCTCGACTGAGT---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------ACGGGCGGCC----GTGA----CACGGGCGTGGAGC
TGCTGCAGCCCGTC-AAGACGGTGCAGATTCCAGCGACTCTGACTAGCCA--GCTGCATCCTGTCCACGACCCCA---TG
GTAGCAACTTGAAGAAGATTTG-CTTAAGTGG---TACAGTAGCT------TAGT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------AGTAGTAAGTTGCT
GTAGTCCTAAGTTTATGTCAACTCTCGTCGTGAC----TCGTGAATTTATGTCTGATTATCACTGCACCGGATGTG--CA
TGC----GAT------TATATATGTGTGAGGGTCTGTGAGACCCTGAGTAGTAGTGCTGGATAGGAGTTTGATATATTTT
AT-------------------------------------------------------ATGGCCAAAGCGTGTAATCGTGG
TCACATAATTC--------------------------------TGCAAAGATGCTTATTTACTTGCACGTCCTGTCATTA
TTATTGTGACCCTACTACCGTTTCATTTTTTTTTCTCAAAGAGAAGAAATTGCTTCATTGGAATTGGTACAGTAAGTCAT
TTTAGAAAAAATATATTTG-GCACAGTATGTGAAACTATAAGGATGCAACAAATATTTGGAAAGACAAACCCCTCCAAAT
GTTATTTAGAAAGCTACAAGGAATTAGTCTGTTATTCGCAAAAAAAAAAAAGGAATTTAGTCTGTCAAAGAAGAGGTCAA
TAATATGCCTGATATTTTCAGTTTTGTTTGTCAT-AGATGTGGTTATTAGATCGTATCTTCATATTGCTTTCATGATTAT
TAGTGTGTGTGCGCGCGCGTGTTTGTCTTGTCATACTTAAAATCTCAACCATCTATGATCCGTCTAGATATTCCATCTAG
CAGCAAGTATGATCTCCAATGAATATGGGTGCTTA-------------------------------------------
>chr1D_30
-----------------------------CTCTCTCTGACCCGTCACGGCCACCAACGGGCGAGCATTTCGATGTTCATT
CCCTTTCCCCTGTTCCTC--------------------------------------------------------------
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------------------------------------------------------GCAGTCTGCTCA--------------
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------------------------------------------------------------------------TCCTCTTC
TCTTCAGTAGCAGTCAGTAGTAACTCACTTTCCTTCTCCTCAACCACCACC----C----TCCTCCCTACGTGCTCGCCG
ATCGATGGAGTGGACACCAAAGCAGCAGGCTCTCGGCGGCCTCGGCCTCGCCGGCGTCTGCCGGGAGACCTGCCGTGTGA
TCCGCCGCGCCATGCTCCCCAACTTCGTCAACCTGGGTCCCCCGCTGCTCTCCGCGCTCTTGCTCGCCACCTCCGCCGCC
ATCC-GCGCCCTCTGCTCCCGCGTCCTCGCCGACCTCC---AC---CACAACGGCCCCAGCCTCCTCCGCCTCGTCACCG
ACCGGCTCGCCTTCTTCCTCTTCGTGGCCGTCTCCACCGGCCTTGTCCTCCTGCTCGTGCTCCTCTG---CACCGCCGCC
TA---CGTCTTCTGCGTCGCCTCCCTCTACTGCACCGGGGGCGACCTCCGCGCCGCCGATCGCGTCCTCAGGGGGTTCCC
CACGGTCCAGCTCACGCGGCTCGGCTGCACGTTGCTCCTCGCCGCGGTCCC---CTTTCTCGTGGTCGACACCTCCCTCT
TCGTCGCCAGCTGCAGGACCTGCTTGGCGCTCCAGCTCCAGGACCTGCTTGCCGCTCCGGACAA---GGACAAGATCATG
CTGACGATGTACCTGCTCGCATGGGCCGCGTGCCTCGCCGGCGCGGCCTACGTCGCCGTGGTCTGCCAGCTGGCCTGCGT
GGTGTCCCTGCTCGAGGATGCCATGCTCTTCCGCGCCCTGCGCAAGAGCCGTGCGCTCCTCGCCGGCAAGTTCTGGGAGG
CCGCCGGCGTCTTCGTCACGCTCGACGGCTGCATCTTCGCCGTGCTGGTGGCTTTCCCGGCTCTGGTGGTGGACGACGCG
CTGGGCCTCGGCCTCGGGTTCCAGCTGGCCGCCGGGGCGGCGATGGCGGTAGTTCTGTGCGCGGTGGTGCTGTTGACGCT
GGTGGCGCAGCCGGTGGTCTACATGG------------------------------------------------------
-------------TGTGCAAGAAC--------------------------------------------------------
CACCACCACGAGGTCGTCGACAAGGTTCACCTCGACTGAGT---------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------ACGAGCGGCC----GCC-GTCACACCGGCGTGGAGC
TGCTGGAGCCCGTCTCAGACGAAGCAGATTGCAGCAACTCTGCCTAGC-A--GCTGCATCCTGTCCACGATTCCACGGTG
GTAGCTACGTGAAGAAGATTTGACTTAAGTAG---TACAGTAGAT------TAGTAGTAAGTTGCTCTAGTTGTAAGTTT
ATGTGTGATTATCACTGTAGCGTCGTAAGTTTATGTGTGATTATCACTGCACCGGATATGCATGCTTGGGAGATTATATG
GGTGGGGGTCTGTGAGACTCTGACTAGGAGTGCTGGGTAGTACTCAACTAATATAAAAGCGTTTAGATCGCTATTTTAGT
GATCTAAATGCTCCACGGTGGTAGCAACGTGAACAAGATTTGACTTAAGTAGTACAGTAGTTTAGCAGTAGTAAGTTGCT
GTAGTCGTAAGTTTATGTCTGATTATATCACTGTACCGTCGTAAGTTTATGTCTGATTATGACTGCACCGGATATATTCA
TGCTTGGGATTATATATGCGTG-------GGGTCTTTGAGACTGTGAGTGGGAGTGCTGCGTAGAAGCTAGTACAACTGT
TTAAGCTTGTCAAATTTTTGCAGAAACAGTGA------------------------------------------------
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------------------------------------------------------------------------------
>chr1D_54
-----------------------------------------------------CAACAGGCGAGCATTTCGATGTTCATT
CCCCTTCCTCTGCTCCCC--------------------------------------------------------------
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------------------------------------------------------CCAGTCTGCCCG--------------
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------------------------------------------------------------------------TCCTCTCC
CCTTCACTT-C-------AGCAGCGCACTTTCCTTCTCGA-AACCACC---------CTCCGTGCTC----GCTCGATCG
ATCCATGGAGTGGACGCCCGACCAGCAGGCTCTCGGGGGCCTCGGCCTCGCCGGCGTCTGCCGGGAGACCTGCCGTGTGA
TCCGCCGCGCCATGCCCCCCGACTTTGTCAACCTGGTTCCCCCGCTGCTCTCCGCGCTCTTGCTCGCCACCTCCGCCGCC
ATCC-ACATCCTCCGCTCCCGCGTCCTCTCCGACCTCC---AC---CACGACGGCCCCAGCCTCCTCCGCCTCGTCACGG
ACCGGCTCGCCTTCTTCCTCTTCGTGGCCGTCTCCACCGGCCTTGTCCTCCTGCTCATGCTCCTCTG---CACCGCCGCC
TA---CGTCTTCTGCGTCGCCTCCCTCTACTGCACCGGGGGCGACCTCCGCGCCGCCGATCGCGTCGTCAGGGGGTTCCC
CACGGTCCCGCTCGCGCGGCTCCTCTGCACGTTCCTCCTCGCCGCAGGCCC---ATTTCTTGTGATCTGCACCTCCCTCT
TCGTCTCCGCCTT---------------GTTCCATCCCCAGGAGCTGCTGGGCG---CTCC------GGACAAGATCATG
CTGCCGATGCAGCTGCTGGGATGGGCCGCGTGCCTCGCCGGTGCGGCCTACGTCGCCGTGGTGTGCCAGCTGGCCTGCGT
GGTGTCCCTTCTCGAGGACACCATGCTCCTCGGCGCCCTGCGCAAGAGCCGCGCGCTCCTCGCCGGCAAGTTCTGGGCGG
CCGCCGGCGTCTTCGTCACGCTCGACGGCTGCATCTTCGCCGTGCTGGTGGCCTTCCCGGTTCTGGCGGTGGACGACGCG
CTGGGCCCCAGCCTCGGGTTCCAGGTGGCCTACGGGGCGGCGACGGCGGTGGCTCTCAGCGCGGTGGTGCTGTTCACGCT
GGTGGCACAGCCGGTGGTCTACATGG------------------------------------------------------
-------------TGTGCAAGAAC--------------------------------------------------------
CACCACCACGAGGTCGTCCACAAGGTCCACCTCGACTGAGT---------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------ACGAGCGGCC----GTCA----CACCGGCATGCAGC
TGCTGCAGCCTGTC-AAGACGGAGCCAATTCCAGCAACCCTGCCTAGCTA--GCTGCATCCTGTCCACGACTCCACGGTG
GTAGCAACTTGAAGAAGATTTG----------------------------------------------------------
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------------------------------------------------------------------------------
>chr5B_107
TCTC----------------------------------------------------------------------------
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--------------------------------------------------------------GAATTTTTGTCATATAAG
ACCATCTATGCTTTCGTATTGTCAAAAAAGATCACACCCGGACCGTATTGACAAAAAGGACCACGTACACTGTGGCAGCA
GGTCTGGCAGCCGACACGTGGCACCTGCCGCCACAGCAGC----------------------------------------
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-----------------------------------------------------------------------------CGG
CGGCAGGACTTGCCGCCACAGACGGCGGCGGCAGCTTCTGTTTAACAGATTTTTC-------------------------
----GCCTCTGCATCGATCCACAACGGAA--------CGGAAA-------GGCTAGGTGGGCCCTGCCGCCATAGAGGGT
GACGGCAGCTTCTTTTACTGTCGTGCGACGCAGCATCTCATTGAGAAGGTACTCTGCGCCTAGCACTTAGCGGCGCGAGG
AAAATACATGGGCTGGGCAAGAATTAAACCAATCACTCTGCGCTGAAAAATCTCGCAATTAAGCCAACGACCTGACCCTA
CTCCACCATGCAGTCTCGGCCCACGTTCAACGCACTCTTGCCAATCAACGCTACTATCTTGGTAATTACTAACAACCAAC
GAGCGGCTAACTAGCG----------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------CAGTAAAATGAGCTGCC----GCCA----CCTTCTTTGA----
-------------------------------CGGCATGGCTCACATGCCA--TCTCCGTTCTGTTATG------------
--------------------------------------------------------------------------------
---------TATCACTGTAGAGGCGAAAAACCTGTTACATGCAAGCTGCCGCCGTCGGCTGTGGCGGCAGGTCCTGCCGC
CAGCTGCTGTGGCGGCAGGTGCCACGTGTCGGCTGCCGGACCTGCCGCTACAGTGCATGTGGTCTTT-------------
------------------------------------------------------------TTTGCCAATACGGTTTGGGT
GCGGTCTTTTC---------------------------------------------------------------------
----TGGCAATATAAATGTGTA-------GGTGGTC------------------------------------------TT
TT-------------------------------------------------------CTGACAAAAATTC----------
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------------------------------------------------------------------------------
>chr1B_110
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-------------------------------------------------------------GGAATTTTTGTCAGAAAAG
ACCACCTACACATTTATATTGCCAGAAAAGACCGCACCCAAACTGTATTGGCAAAAAAGACCACATGCACTGTGGCGGCA
GGTCCGGCAGCCGACACGTGGCACCTGCCGCCACAGCAGCT---------------------------------------
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------------------------------------------------------------------------------GG
CGGCAGGACCTGCCGCCACAGCCGACGGTGGCAGCTTGCATGTAACAGGTTTTCC-------------------------
----GCCTCTACAGTGATACATAACAGAA--------CGGAGATGGCA-------TGTGAGCCATGCCGTCAAAGAAGGT
GGCAGCAGCTCATTTTACTGCGCTAGTTAGCCGCTCG-------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------TTGGTTGTTAGTAATTACCAAG
ATAGTAGCGTTGATTGGCAAGAGTGCGTTGAACGTGGGCCGAGACTGCATGGTGGAGTAGGGTCAGGTCGTTGGCTTAAT
TGCGAGATTTTTCAGCGCAGAGTGATTGGTTTAATTCTTGCCCAGCCCATGTATTTTCCTCGCACCGCTAAGTGCTAGGC
GCAGAGTACCTTCTCAATGAGATGTTGCGTCGCACGACAGTAAAAGAAGCTGCC----GTCA----CCCTCTATGG----
-------------------------------CGGCAGGGCCCACCTAGCCTT--TCCGTTCCGTTGTG------------
--------------------------------------------------------------------------------
---------GATCGATGCAAAGGCGAAAAATCTGTTAAACAGAAGCTGCCGCCGCCGTCTGTGGCGGCAAGTCCTGCCGC
CGGCTGCTGTGGCGGCAGGTGCCACGTGTCGGCTGCCAGACCTGCTGCCACAGTGTACGTGGTCCTT-------------
------------------------------------------------------------TTTGTCAATACGATCTGGGT
GTGGTCTTTTT---------------------------------------------------------------------
----TGACAATACGAAAGCATA-------GATGGTC------------------------------------------TT
AT-------------------------------------------------------ATGACAAAAATTCC---------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------------
>chr5B_111
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--------------------------------------------------------------GAATTTTTGTCAGAAAAG
ACCACCTACACATTTATATTGCCAGAAAAGACCGCACCCAAACCGTATTGGCAAAAAAGACCACATGCACTGTAGCGGCA
GGTCCGGCAGCCGACACGTGGCACCTGCCGCCACAGCAGCT---------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------------GG
CGGCAGGACCTGCCGCCACAGCCGACGGCGGCAGCTTGCATGTAACAGGTTTTTC-------------------------
----GCCTCTACAGTGATACATAACAGAA--------CGGAGATGGCA-------TGTGAGCCATGCCGTCAAAGAAGGT
GGCGGCAGCTCATTTTACTGCGCTAGTTAGCCGCTCG-------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------TTGGTTGTTAGTAATTACCAAG
ATAGTAGCGTTGATTGGCAAGAGTGCGTTGAACGTGGGCCGAGACTGCATGGTGGAGTAGGGTCAGGTCGTTGGCTTAAT
TGCGAGATTTTTCAGCGCAGAGTGATTGGTTTAATTCTTGCCCAGCCCATGTATTTTCCTCGCGCCGCTAAGTGCTAGGC
GCAGAGTACCTTCTCAATGAGATGCTGCGTCGCACGACAGTAAAAGAAGCTGCC----GTCA----CCCTCTATGG----
-------------------------------CGGCAGGGCCCACCTAGCCTT--TCCGTTCCGTTGTG------------
--------------------------------------------------------------------------------
---------GATCGATGCAGAGGCGAAAAATCTGTTAAACAGAAGCTGCCGCCGCCGTCTGTGGCGGCAAGTCCTGCCGC
CGGCTGCTGTGGCGGCAGGTGCCACGTGTCGGCTGCCAGACCTGCTGCCACAGTGTACGTGGTCCTT-------------
------------------------------------------------------------TTTGTCAATACGGTCCGGGT
GTGATCTTTTT---------------------------------------------------------------------
----TGACAATACGAAAGCATA-------GATGGTC------------------------------------------TT
AT-------------------------------------------------------ATGACAAAAATTC----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------------
>chr1B_921
--------------------------------------------------------------------------------
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------------------------------------------------------------------------TCCTCTTT
CCTTCAGTAGC-------AGTAGCTCACTTTCCTTCCCAC-CACCACCACTATACC--------------TGCTCGATCG
ATCCATGGAGTGGACACCCGACCAGCAGGCTCTCGGGGGCCTCGGCCTCTCCGGTATCTGCCGGGAGATCTGCCGTGTGG
TTCACCGCGCCATGCTCCCCAACTTCGTCAACCTGGGTCCCCCGCTGCTCTCCGCGCTCTTGCTCGCCAGCTCCGCCGCC
ATCCCGCGCCCTCTGCTCCCGCGTCCTCTCCGACCTCCACGAC---CACGACGGCCCCGGCCTCCTCCGCCTCGTCACGG
ACAGGCTCGCCTTCTTCCTCTTCGCGACCGTCTCCATCGGCCTTGTCCTCCTGCTCGTGCTCCTCTGCACCACCGCCGCC
TA---CGTCTTCTGCGTTGCCTCCCTCTACTCCACCGGAGGCGACCTCCGCGCCGCCGATCGCGCCCTCAGGGGGTTCCC
CACGGTCCCGCTCACGCGGCTCGTCTGCACGTTGCTCGTCGCCGCGGTCCCCATCTTCCTCGTGCTCTGCGCCTCCATCT
TCGTCGCCCCCTT---------------GTTCCATCCCCAGGATCTGCTCGGCA---CTCC------GGACAAGATCATG
CTGCCGCTGCAGCTGCTGGGATGGGCCGCGTGCCTCGCCGGCGCGGCCTACGTCGCCGTGGTGTGCCAGCTGGCCTGCGT
GGTGTCCCTGCTCGAGGACGCCGTGCTCTTCCGCGCCCTGCGCAAGAGTCGCGCGCTCCTCGCCGGCAAGTTCTGGGCGG
CAGCCGGCGTCTTCGTCACGCTCGACGGTTGCATCTTCGCCCTGCTCGTGGCTTTCCCGGTTCTGGTCGTGGACGATTCG
CTGGGCCTCGGCCTCGGGTTCCAGCTGGCCGCCGGGGTGGCGATGGCGGTGGCTCTGTGCGCGGTGGTGCTCTTGACGCT
GGTGGCGCAGCC------------GG------------------------------------------------------
-------------TGTGCAAGAAC--------------------------------------------------------
CACCACCACGAGGTCATCGACAAGGTCCACCTCGACTGAGT---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TCGAGCGGCC----GTCA----CACAGGCGTTGAGC
TGCTGGAGCCTGTC-GAGACGGAGCAGATTCCAGCAAATCTGCCTAGCTA--GCTGCATCTTGTCCACGACTCTACGGTG
GTAGCAGCGTGAAGAAGATTTGACTTAAGTAG---TATAGTAGAT------TGTAGTA----------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------------
>chr1A_937
--------------------------------------------------------------------------------
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--------T-C-------AGTAGCTCACTTTCCTTCCCCA-AACCACCACCACCACCCTACGTGCTCGAATGCTCGATCG
ATCCATGAAGTGGGCACCCGACCAGCAGGCTCTCGGCAGCCTCGGCCTCGCCGGCGTCTGCCGGGAGACCTGCCGTGTGA
TCCGCCGCGCCATGCTCCCCAACTTGGTCAACCTCGGTCCCCCGCTGCTCTCCGCCCTCTTCCTCGCCAGCTCCGCCGCC
ATCC-GCGCCGTCTGCTCCCGCGTCCTCTCCGACCTCCACGAC---CACGACGGCCCCAGCCTCCTCCGCCTCGTCACCG
ACCGGCTCGCCTACTTCCTCCTCGTGGCCGTCTCCATCGGCGTCGTCCTCCTGCTCGTGCTCCTCTGCACCACCGCCGCC
TA---CGTCTTCTGCGTCGCCTCCCTCTACTGCACCGGGGGCGACCTCCGCGTCGCCGATCGCGTCCTCAGGGGGTTCCC
CACGGTCCCGCTCACGCGGCTGGTCTGCACGTTCATCTTCGCCGCAGGCCC---ATTTCTTGTGATCTGCACCTCCCTCT
TCGTCGCCGGCTT---------------GTTCCATCCCCAGGAGCTGCTGGGCG---CTCC------GAACAAGATCATG
CCGACGATGCACCTGCTCGCATGGGCCGCGTGCCTCGCCGGCGCGGCCTACTTCTCCGTGGTGTGCCAGCTGGCCTGCGT
GGTGTCCCTGCTCGAGGACGCCATGCTCTTCCGTGCCCTGCGCAAGAGCCGTGCGCTCCTCGCCGGCAAGTTCTGGGCGG
CCGCCGGCGTATTCGTCACGCTCGACGGCTGCATCTTCGCCGTGCTGGCGGCTTTCCCCGTTCTGGTGGTGGACGATGCG
CTGGGCCTCGGCCTCGGGTTCCAGCTGGCCGCCGGGGTGGCGATGGCGGTGGCTCTGTGCGCGGCCGTGCTGTTGACGCT
GGTGGCGCAGCCGGTGGTCTACATGG------------------------------------------------------
-------------TGTGCAAGAAC--------------------------------------------------------
CACCACCACGAGGTCGTCGACAAGGTTCACCTCGACTGAGT---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------ACGAGCGGCC----GTCAGTCACACCGGCGTGGAGC
CGCTGCAGCCCGTCTGAGACGAAGCAGATTGCAGCAACTCGGCCTGGCTA--GCTGCATCATGTCCACGATTCCACGGTG
GTAGCTACGTGAAGAAGATTTGACTTAACTAGGAGTACAGTAGATTAGTAGTAGT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------AGTAGTAAGTTGCT
GTAGTC------------------------------------AAGTTTATGTGTGATTATCACTGCACCGGATATG--CA
TGCTTGGGAT------TGTATATGTGTGATGGTTTGTGAGACTC-GAGTAGGAGTGCTTGGTAGCAGCTAGTACAACTGT
TTAAGCTTGAGAAA--TTTGCAGAA-------------------------------------------------------
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>chr1A_988
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----------------------------------------------------------------------TGCTCGATCG
ATCCATGAAGTGGGCACCGGAGCAGCAGGCTCTCGGGGGCCTCGGCCTCGCCGGCGTCTGCCGGGAGACCTGCCGTGTGA
TCCGCCGCGCCATGCTCCCCAACTTCGTCAACCTCGGTCCCCCGCTGCTCTCCGCGCTCTTGCTCGCCACCCCCGCC---
----------CTCTGCTCCCGCGTCCTCGCCGACCTCC---AC---CACGACGGCCCCGGCCTCCTCCGCCTCGTCACCG
ACCGGCTCGCCTTTTTCCTCTCCGTGGCCGTCTCCATCGGTCTTGTCCTCCTGCTCGTGCTCCTCTG---CACCGCCGCC
TA---CGTCTTCTGCGTCGCCTCCCTCTACTGCACCGGAGGCGACCTCCGCGCCGCCGATCGCGTCCTCAGGGGGTTCCC
CACGGCCCCGCTCGTGCGGCTCGTCTGCACCTTCCTCCTCGCCGCGGCCCC---CTTCCTCGTGGTCTGCGCCTCCCTCT
TCGTCGCCGCCTT---------------GTTCCAGCTCCAGGAGCTGCTCGACG---CTCCGGACAAGAACAAGATCATG
CTGCCGCTGCAGCTGCTGGGATGGGCTGCGTGCCTCGCCGGCGCGGCCTACGTCGCCGTGGTGTGCCAGCTGGCCTGCGT
GGTGTCCCTGCTCGAGGACGCCGTGCTCTTCCGCGCCCTGCGCAAGAGCCGCGCGCTCCTCGCCGGCAAGTTCTGGGCGG
CCGCCGGCGTCTTCGTCACGCTCGACGGGTGCATCTTCGCCCTTCTGGTGGCTTTCCCGGCCCTGGTGGTGGACGATGCG
CTGGGCCTCGGCCTCGGGTTCCAGGTGGCCGCCGGGGCCGCGATGGCGGTGGCGCTGTGCGCGGTGGTGCTTTCGACGCT
GGTGGCGCAGCCGGTGGTCTACATGG------------------------------------------------------
-------------TGTGCAAGAAC--------------------------------------------------------
CACCACCACGATGTCGTCGACAAGGTTCACCTCGACTGAGT---------------------------------------
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--------------------------------------------AAGAGCGGCC----G----TCACACCGGCGTGGAGC
GGCTGCAGCCCGTCTGAGACGGAGCAGATTCCAGTAACTCTGCCTAGCTATAGCTGCATCCTGTCCATGACTCCA---TG
GTAGCAACTTGAAGAAGATTTG-CTTAAGTAG---TACAGTAGCG------TAGTAGTA---------------------
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------------------------------------------------------------------------------
>SNPs
SS-SSSSSSSSSSSSSSSSSSSSS--------------------------------------------------------
-----------S--------------------------------------------------------------------
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------------------------------------------S-------------------------------------
----------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S----
---------------------------------------------------SSS--------------------------
--------------------------------------------------------------------------S-----
--------------------------------------------------------------------------------
S-----------------------------S------------SSS---------------------S------------
--------------------------------------------------------S-----------------------
------S-------S----S---------------------------------------------------S--------
-------------------S--------------------------------------S---------------------
---------------------------------------------S----------------------------------
-------------------------------S-------S-------S--------------------------------
---------------------S----------------------------------------SS----------------
----------------------S--------------S------------------------------------------
--------------------------------------------------------S-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------SS---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------SSSS----------------------
------------S-------------------------------------------------------------------
-------------------------S---------------------------------SSSSSSS-SSSSSS-SSSS-S
-SSS--SSSSSS--SSSS---S-SS-SS----------------------------------------------------
------------------------------------------------------------S------SSSS---------
------------S--S--SSS--SS--S-------SSSSSS-SSS--------------------S----S---------
-----------------------S--------------------------------------------------------
--------------------------------------------------------------------------S-----
-----S----S-------SSSS---S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------S---
------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S-----S------------S----S--------
---S---------S-S-S--------------S------------------------SS---------------------
---------SSSSSSS--SS--------------------------------------SSS---S---------S-----
----SSS----S--------------------------------------------------------------------
----------------S-------SS--SS-SSSS-----------------S-S-----S------------S------
--------S--S-------------S--------------------------------------S---------------
--S--------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_2003
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---------------------------------------------------------------ACTTAGCGGTGCGAGGA
AAA-----------------------------------------------------------------------------
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------------------------------------------------------------------------------
>reverse_4524
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-------------------------------------------GTGTATGTTCGTGCATGGCC-----------------
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------------------------------------------------------------------------------
