>input_sequence_65524
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-----------------------------------ATGGTGAAGCTGGCGACGGCGAGGGAGGCGCGGCTGTACGGGCCG
GCGCTGGCGGTGCGGCGGTGGGAGTACATCAACGCCGGCGCGTACATGTTCGGGACCCTGCTCCTGGCCACGGGGCTCGC
GGCGCTGTGCGCGTCCGAGGGC----------------------------------------------------------
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--------GGCGCCGGCGCCACGGACGCGGGACTCGCCGTGGCCGCCGTGGCGCTGGCGGTGGTGGCGGCCGTGAACGCG
CACGACCTGGGCGCGCACCTCGCCGGCGTGGACTGCCGCGTCGGGCTCGCCCGGTTCGACCCCCAGCTCGGCCTCGTCGA
GCTCCTCGCGCCCGCGCTCCACGCCGCCGGCTGCGTCCTCGCCATCGTCGGCCTCGCGCTGCAGCTCTTCTCCCAGGTTC
GTTAGTGTCAACCGTCGGCAAACGCAT---------GGGCCGCCGACCGCCG----CCGTTAACTAACTACTGCTCGTTG
TGT-TTTCTGCTGATGGTCTGAACAGGGCGAGAAGCTGGAGAGGCGCGCGGCCGACGCGCTGCTGGCGGGCGCGGTGCTC
TGGCTGCTGGGCTCCGTGCTCAGCTCATGTCAGGTGTACGAGCGCGCTGACGGCCGCGCGCAGCTGCTGCAGTCCAGCGT
GCAGGTGCCCGTCCTCCTCGGCAGCCTGCTCTTCCTCGTCGCCGCCGCCCTCCACCGCCGCCGTGAGCCCACCCTGGCAG
GCAAGGGCGAAAGCCAGAGCGAGAGCGAGGGGTGGATTAGCCTGTGCGGGAGCGTGCTGTGGGTGGCGGGTGCACTGTTC
AACGTGCTGAAAGTGTTTGTCATGCACCAGAGCGACGCGCCGCGGCTCGAGAAGCTCCGCGGCGGCGCGCAGGAGCGGCT
CGCCCGGGACCGCGAGGGCCGCGTGCCGCTGGTCTGGAGGTCGGCGGCGCCGCCGACCGAGCTGCGCTGA----------
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>chr1A_1_TraesCS1A01G426800
GCAAGAGGTTGACCTACCAAGAAGTTGCCCATCTAGTTTTGACAGATATTCGCTTGCACAGATCCAGTTGCTTTCCCATT
CGCGAGTAATCCGCATGCCGATGATGGTTGGGAGGCTCCCCCGCCACCCGAATCTTATAGGAAAAAGCCTTGTGTAAACT
ATTGTAACACTCACTCTTCTTCTAATTAAAAGGCAGCGCTCCTGCGAGTTTCTCGAAAAAAAACTTGACAGAATATTTCA
TCGAGGATACACAAGAGATAATCCATGACTAACATACGCATATACATGTGAAAATCTTGATATGAAAATACCTAATATAT
CTAGCCGCGCAAATGCGCGGTCACCTTGCTAGTTCCAATTATTTTGAAACGGAGTAATATCTGACAAGACTATGTAAAAA
AAAATCAAGACCTGCAATTCGGCGTGAATGCGCAGTCGCGCTGAAGCGGCAGGACCTGTTGGTTGGTCCAGTCGTGCAGC
GTATGATGCTCCATCCAGTGCAGCGCTGGATGAGGACGAAGCTCAAAAATAAAAGAATATTATTGCTTGCATGTGACACA
ATTGAAACCATACAACACTACATACTGTCATAGTACGTACTACTAGGAGTACTATTAAAATACAAGTAATCCATACACTG
ATACACAAATGCAAATTAAAAATGACGCAAGCAGTCAGACCTCGAGACAAACATGTTTGAATCGAAGTTGGCAAGTGAGA
CCCGGGTTCTCCTCTGCCCCGGTGAGCAAAAGCAGAGCAGGGGGCATTGCCACATGTCGCATGGCATCCAGGTGCTCTGT
CCCCGTTTCCCTTCGTCAACT------------------ACGCACCACCTGTCCGTCCAGACGCGCCATGCACGGCGCCA
CGCACACTCGTTCCAAACTCCGCCTACGCATCCCAG--------GTTCCCAACCCACCGCATTGACTCTCGATCGCGGCG
GTTTCTCGCTACTTTACTCCCCACTCGCACCGCTCGCCGTGACGCGTCGACGGAGCCGCCGA------------------
-------------------------------GGCCATGGTGAAGCTGGCGACGGCGAGGGAGGCGCGGCTGTACGGGCCG
GCGCTGGCGGTGCGGCGGTGGGAGTACATCAACGCCGGCGCGTACATGTTCGGGACCCTGCTCCTGGCCACGGGGCTCGC
GGCGCTGTGCGCGTCCGAGGGC----------------------------------------------------------
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--------GGCGCCGGCGCCACGGACGCGGGACTCGCCGTGGCCGCCGTGGCGCTGGCGGTGGTGGCGGCCGTGAACGCG
CACGACCTGGGCGCGCACCTCGCCGGCGTGGACTGCCGCGTCGGGCTCGCCCGGTTCGACCCCCAGCTCGGCCTCGTCGA
GCTCCTCGCGCCCGCGCTCCACGCCGCCGGCTGCGTCCTCGCCATCGTCGGCCTCGCGCTGCAGCTCTTCTCCCAGGTTC
GTTAGTGTCAACCGTCGGCAAACGCAT---------GGGCCGCCGACCGCCG----CCGTTAACTAACTACTGCTCGTTG
TGT-TTTCTGCTGATGGTCTGAACAGGGCGAGAAGCTGGAGAGGCGCGCGGCCGACGCGCTGCTGGCGGGCGCGGTGCTC
TGGCTGCTGGGCTCCGTGCTCAGCTCATGTCAGGTGTACGAGCGCGCTGACGGCCGCGCGCAGCTGCTGCAGTCCAGCGT
GCAGGTGCCCGTCCTCCTCGGCAGCCTGCTCTTCCTCGTCGCCGCCGCCCTCCACCGCCGCCGTGAGCCCACCCTGGCAG
GCAAGGGCGAAAGCCAGAGCGAGAGCGAGGGGTGGATTAGCCTGTGCGGGAGCGTGCTGTGGGTGGCGGGTGCACTGTTC
AACGTGCTGAAAGTGTTTGTCATGCACCAGAGCGACGCGCCGCGGCTCGAGAAGCTCCGCGGCGGCGCGCAGGAGCGGCT
CGCCCGGGACCGCGAGGGCCGCGTGCCGCTGGTCTGGAGGTCGGCGGCGCCGCCGACCGAGCTGCGCTGACAGT------
-----------------------------------------------------------------ATGGTAATTAAGGAG
GCTGGTGCACCAAGGAATACCAGCGTGGCCGGCGCCGG---AACTATACTCCGGTTCTGTTTGGTGTCTCTTTCTAGCAG
AGTATAGTGTAAGAACTTTTAGTCCCTTTTCGATGGAAACAAAATCAGGAGGAGACTCCGTGTTTTAAGAAGAAAATATA
TTTTAAAAGTGCGGCTAGGTCTTAGTCAACTGGATTTAAGTGACATAAGTGACATAACATGCAAGAGGGGAGAAACCTAA
AAAGAAAATTTTGCACGAATCTCAATGTGAATCTCAATGTAAGAACTCACGGATATGACATCGATTCAGACTTTGTTAAG
TCTTAGCAAGACTGAATTTTAATTACGCCCCTCTGAGTCCATATCAACTGATTTAGTGCGATTTATGGATCGGAGGGAGT
AATAACTTATTTAGGAATGTTTCTTCTTATTAGACTACACACAATGGGAGTAACATATGTAGTAACATCACATATATCTG
GATAAAATAAATGATGTGACAAGCAATAAATGAAAAGTAGTAACACTGCTAGTTACTGTTACTACTAGCAGTATGAGTAA
TATCACATATATTAAGATAAGATGTGTCTATAGTTTAATAAATAATGTGTTTTATGTTACCATATATATGTTACTCCCCA
CTTTAAAGGTTGTAACATAAATTAGTAATGCGCATGTTATTAATATATGTTACTACCATTGTAGCTAGTTTTATAACGAA
ACATTGGAGGAAGTAACAACTTTTTCTAGGGAAATGTTTCTTCTTATTATAACGGAACATTAGAGCACGCCTTTCCTTTT
CATGGTAATACGCGTCTCTTCGTCTTTAAAAAAACAAATACAACTCACGTAAAGACTTCGTCTTTAAAAAAACAAATACA
ACTTACCTAAAGATCGACATGACAAAACTGAAAAAGATAAAGATAACAAAACATCTATAAAGTTGACACCAACGTCCGTC
ACCTACCTCCGGCATTATCACAAC
>chr1B_594
TACTACG-------------------------------------------------------------------------
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----------------------------------------TACTAGGAGTACAATTAAAATACAAGTAATCCATACACTG
AGATTTAATC---------AAGTGACGCGAGCAGTCAGACCTCCAAACGAACATGTTTGAATCGAAGTTGGCAAGTGAGA
CC-------------------------------------------------------CGCATGGCATCCAGGTGCTCTGT
CCCCGTTTCCCTTCGTCAACCTCCACCTGTGAGGGGAGCACGGGCCACCTGTTCGGCCAGGCGCGCCATGCAAAGCGCCA
CGCACACTCGTTCCAAACTCCGCCTACGCATCCCAACTTCCCAAGTTCCCAACCCACCGCATTGACTCTCGATCGCGGCG
GTTTCTCGCTACTTTACTCCCCGCTCGCACCGCTCGCCGTCACGCGTCGACGGAGCCGCCGAGGGACTCTGCTTCGCTTG
CATTCGGTCGGTCGGTCGGTCGGTTGGTCGGGGCCATGGTGAAGCTGGCGACGGCGAGGGAGGCGCGGCTGTACGGGCCG
GCGCTGGCGGTGCGGCGGTGGGAGTACACCAACGCCGGCGCGTACATGTTCGGGACCCTGCTCCTGGCCGCGGGGCTCGC
GGCGCTGTGCGCGTCCGAGGGC----------------------------------------------------------
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--------GGCGTCGGCGCCAGGGACGCCGGGCTCGCCGTGGCCGGCGTGGCGCTGGCCGTGGTGGCGGCCGTGAACGCG
CACGACCTGGGCGCGCACCTCGCCGGCGTGGACTGCCGCGTCGGGCTCGCCCGGTTCGACCCCCAGCTCGGCCTCGTCGA
GTTCCTCGCGCCCGCGCTCCACGCCGCCGGCTGCGTCCTCGCCATCGTCGGCCTCGCGCTGCAGCTCTTCTCACAGGTTC
GTGAGTGTCGACCGTCGACAACCACAATCACGCATGG-GCTCGCCGATAACATTATCCGCTGACCGACTGCTGCTTTTTC
G-------TGCTGATGGTG-GAACAGGGCGACAGGCTAGAGAGGCGCGCGGCGGACGCGCTGCTGGCGGGCGCGGCGCTC
TGGCTGCTGGGCTCCGTGCTCAGCTCGTGCCAGGTCTACGAGCGCGCCGACGGCCGCGCGCAGCTGCTGCAGTCCAGCGT
GCAGGTGCCCGTCCTCCTCGGCAGCCTGCTCTTCCTCGTCGCCGCCGTCCTCCACCGCCGCCGTGAGCCCGCCCTGGCAG
GCGAGAGGGAA------AGCGAGAGCGAGAGGTGGATTAGCCTGTGCGGGAGCGTGCTGTGGGTGGCGGGCGCACTGTTC
AACGCGCTCAAGGTGTTCGTGATGCACCAGAGCGACGCGCCGCGGCTCGAGAAGCTCCGCGGCGGCGCGCAGGAGCGGCT
CGCCCGGGACCGTGAGGGCCGCGTGCCGCTGGTGTGGAGGTCGGCGGCGCCGCCCACCGAGCTGCGCTGACAGT------
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>chr1D_741
GGTGACA-------------------------------------------------------------------------
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--------------------------CAAAAACAGAGTA--GGGCATTGCCACATGTCGCATGGCATCCAGGTGCTCTGT
CCCCGTTTCCCTTCGTCAATGTCCACCTGTGAGGGGAGCACGGACCACCTGTAGGGCCAGACGCGCCATGCAAAGCGCCA
CGCACACTCGTTCCAAACTCCGCCTACGCATCCCAA--------GTTCCCAACCCACCGCATTGACTCTCGATCGCGGCG
GTTTCTCGCTACTTTACTTTCCACTCGCACCGCTCGCCGTGACGCGTCGACGGAGCCGCCGAGGGAGTCTGCCCCGCTTG
CATC--------CGGTCGGTGGGTCGGTCGGGGCCATGGTGAAGCTGGCGACGGCGAGGGAGGCGCGGCTGTACGGGCCG
GCGCTGGCGGTGCGGCGGTGGGAGTACATCAACGCCGGCGCGTACATGTTCGGCACCCTGCTCCTGGCCGCGGGGCTCGC
GGCGCTGTGCGCGTCCGAGGGC----------------------------------------------------------
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--------GGCGTCGGCGCCACGGACGCCGGGCTCGCCGTGGCCGGCGTGGCGCTGGCGGTGGTGGCGGCCGTGAACGCG
CACGACCTGGGCGCGCACCTCGCCGGCGTGGACTGCCGCGTCGGGCTCGCCCGGTTCGACCCCCAGCTCGGCATCGTCGA
GTTCCTCGCGCCCGCGCTCCATGCCGCAGGCTGCGTCCTCGCCATCGTCGGCCTCGCGCTGCAGCTCTTCTCCCAGGTGA
GTGAGTGTCGACCGTCGGCAAACGCAAGGACGCATGG-GCCGCTGATCGCCG----CCGGTGACTAACTACTGCTCGTTG
TGT-ATTCTGCTGGTGGTCTGAACAGGGCGACAAGCTGGAGAGGCGCGCTGCCGACGCGCTGCTGGCGGGCGCGGCACTG
TGGCTGCTGGGCTCGGTGCTCAGCTCGTGCCAGGTGTACGAGCGCGCCGACGGCCGCGCGCAGCTGCTGCAGTCCAGCGT
GCAGGTCCCCGTCCTCCTCGGCAGCCTGCTCTTCCTCGTCGCCGCCGCCCTCCACCGCCGGCGTGAGCCCACCCTGCCAG
GCGAGAGGGAA------AGCGAGAGCGAGAGGTGGATTAGCCTGTGCGGGAGCGTGCTGTGGGTGGCGGGCGCACTGTTC
AACGTGCTCAAGGTGTTCGTGATGCACCAGAGCGACGCGCCGCGGCTCGAGAAGCTCCGCGGCGGCGCGCAGGAGCGGCT
CGCCCGGGACCGTGAGGGCCGCGTGCCGCTGGTCTGGAGGTCGGCGGCGC---------AGCTGCGCTGACGGTCATGGA
GCCCAAGCCCAAGCCGCAAGCCGGCCGCCTCGTTGCTTTGTTCCACCATTGTTCGGACGCTCAAGATGGTAATTAAGGAG
GCTGGTGCACCAAGGTATAACAGGGCGGCCGGCGCCGGTGAAACTATACTC-----------------------------
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>chr4D_997
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-------------------------------GGCCATGGTGAAGCTGGCGACGGCGAGGGAGGCGCGGCTGTACGGGCAG
GCGCTGGCGGTGCGGTGGTGGGAGTACATCAACGCCGGCGCGTACATGTTCGGCACCCNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNGGCGTCGGCGCCACGGACGCCGGGCTCGCCGTGGCTGGCGTGGCGCTGGCGGTGGTGGCGGCCGTGAACGCG
CACGACCTGGGCACGCACCTCGCCGGCGTGGACTGCCACGTCGGGCTCGCCCGGTTCGACCCCCAGCTCGGCATCGTCGA
GTTCCTCGCGCCCGCGCTCCATGCCGCAGGCTGCGTCCTCGCCATCGTCAGCCTCGCGCTGCAGCTCTTCTCCCAGGTTC
GTGAGTGTCGACCGTCGGCAAACGCAT---------G-GCCGCCGATCACCG----CCGGTGACTAACTACTGCTCGTTG
TGTGTTTCTGCTGATGGTCTGAACAGGGCGACAAGCTGGAGAGGCGCGCCGC----------------------------
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>SNPs
-SSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------S---------------------------
-S-SSS--SSSSSSSSSSS--S------S--------------S-S--S-------------------------------
--SSSSSSSSSSSSSSSSSSSSSSSS-----S-----S-SS---------------------------------------
--------------------S---------------------S---------S--S----------------SS------
-----------------------------------S--------------------------------------------
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---------------------------------------------------------------------S----------
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------------S---------------S--S-------------S----------------------------------
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-S------------------------------------------------------------------------------
--S------S---------------------------S--------S------------S-S------------------
-------------------------------S-------------------------------------------S----
--------------------------S--S-----------------S--------------------------------
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--S--S-S---SSSSSS------------S----------------------------------------S---------
--------S--S-----S--S-----------------------------------------------------------
------------S-----------------------------------------S-------------------------
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---------------S---S---S-S-------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS
>forward_93
-------------------------------------------------------------------------TCCCATT
CGCGAGTAATCCG-------------------------------------------------------------------
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>reverse_1763
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--TAGTGTCAACCGTCGGCAAA----------------------------------------------------------
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>forward_853
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---------------------------------TCAACTACGCACCACCTGTC---------------------------
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>reverse_2745
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------------------------ACGCCCCTCTGAGTCCATAT------------------------------------
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