>input_sequence_65513
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-------------------------------------------ATGACTCTGGTCTCCCCCGAGAAATTTCCAGATGTTT
CGCCTATCCTCCATAACCCAGATCAAGGGCACGCCATCATCATTTCATACGACTCTCCTGCGCAACGAGATCGAGGTATG
GCTTCCCGATCCCTCACGATTCACATCCGTGCTCTCCTAGTTGTAGGTCCGGT--------ATCTAACCTGCAACTCTCG
CGCGGGGGAT--TAATTTGTTAGTACCTCAGATTTCTCTTGTTTTTGTTCTTGATTGATTGTTCATTTGAGACGCAACTG
ATATGCATATATGCGCATGGAAATGAGACTGAGGAAAATATATGAAGGGACGGTGTGATAAGGAATTTTAGGAAGGGGTG
TGCTAGTTCATGGTTTTGTTGATGCCTCCAAGATTTTGTTGTTCGTCGCCAGCTTGGCCCGTTTCTTGTTGCTATCTGAA
TTTCTGTGCAAGGTTAATTGTTCTTTCTGCATGACCCTTTCTGTATAATTGACCGTATA---------------------
----CCAAACATATCACTTGTTGCATGCTTACTCCCATGAATCTGTTCTTTGAGTAGAGATTGCAGGCAGCGAGCGCACG
AATTCCATGAGGGGGAGTGCGAGGTCTCTAGTGGAAACTGCAACCAGACAAATCAAACCTGGCAATGGACTTGCGAGTAA
GTCAAGATCCACCCTCAATTTGCTTTGCTTGAGAGTTTGAAGAACCAGCTCGGTGCCTTACTTCTTCACCTTCTGTTGAA
CAGGGTTGATGACGATTACTACTCCCAAGAAGCATGAGAAGGAGATCAGCCCTACTGAATCTGCCCTCCCAAAGGATGAA
AATGTCGAGCCCCTCGTCGCATTCAGCCGTCCGCCTCCTTTGCCACCGGTTCTAGGCCCCTTGATCGCGCTCTCGCTTTT
TCAGACTTCTTCTAGTGATGAAGACAGCAAATGA----------------------------------------------
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>chr2A_1_TraesCS2A01G396100
TCACTGGTTTTCACTATTTTTATTGTTCTTTTTTATTTTCTTTGTTTTTCGTTGGTTTTCTGTTTCTTTTTCGTTTTTCT
CTAGTTTTTTTCTTCGTTTTT-TTTGTTTTTTCCTCGTGTTTCATTTGTTTTCTTTTGTTCTCCTTTAGGTATCCATTGT
TGTTCTATAAACATTTTGGCATATATCTAATACATGTTTAATGTTTTCTCAAATACAATATTGACATTTACTGAGTACAT
GGTCAACTTTTTTTCAATATGCATTTAATATTTTCCAAATGATTGATTAATATTTTTCAAATACCAAATTAACA------
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----------------------------------TTTTTAATACATGGTCAACATTGTTTT-TATAAACATTTTTACA-T
TTTTTAAATTCTTGATTCAAATTTTTTCAATACAAGTTTAAATTTTTTAAAATACATCTTCAACATTCTTCTATACACAT
TTAATATTA-------------------TTTTAAATGGTTGATTAACATTTTTCAAATGCTAGATTAACATTTTTTAATA
CACGGTCAATATTTTTTCTATATACATTTTTTACC-TTTTTCTAAATCCTTGATTAACATTCTTCGAATACTAGATTAAC
ATTTGTTGAATACATGGTAGAATTTTTTCTATAAACATTTAACATTTTTGTAAA--------------------------
--------------------------------------------------------------------TGCTTGATCAGC
ATTTTTTAAATACAAGTTTACATTT-TTATTAGATGGTCAACAGTTTTATCTATAGGCATTTAACACTTGTCAAAAAATA
ACTTTAGCATTTTGTGAATACATGGTCAACATTTTTCTATATACATTAAGCAGATTTTAAATGCTTCGTTAATATTTTTC
AAATACTTGTTTAACA-TTTT-TTCGAATGCTTGGATTAATTT---ATAAACACAGATCAGTGCAACTGGCCTATGATAA
GTGCTAGAGTTTGACGGGCCGGTAAGACTTATTTCAGTATGATATGGGCCAGACTTATTTTAAACGAGGGATCGGGCTCT
TCCATTCAGATAAGTCTGGCCCATATGGTCTGCCAGCGAAAAGATGACTCTGGTCTCCCCCGAGAAATTTCCAGATGTTT
CGCCTATCCTCCATAACCCAGATCAAGGGCACGCCATCATCATTTCATACGACTCTCCTGCGCAACGAGATCGAGGTATG
GCTTCCCGATCCCTCACGATTCACATCCGTGCTCTCCTAGTTGTAGGTCCGGT--------ATCTAACCTGCAACTCTCG
CGCGGGGGAT--TAATTTGTTAGTACCTCAGATTTCTCTTGTTTTTGTTCTTGATTGATTGTTCATTTGAGACGCAACTG
ATATGCATATATGCGCATGGAAATGAGACTGAGGAAAATATATGAAGGGACGGTGTGATAAGGAATTTTAGGAAGGGGTG
TGCTAGTTCATGGTTTTGTTGATGCCTCCAAGATTTTGTTGTTCGTCGCCAGCTTGGCCCGTTTCTTGTTGCTATCTGAA
TTTCTGTGCAAGGTTAATTGTTCTTTCTGCATGACCCTTTCTGTATAATTGACCGTATA---------------------
----CCAAACATATCACTTGTTGCATGCTTACTCCCATGAATCTGTTCTTTGAGTAGAGATTGCAGGCAGCGAGCGCACG
AATTCCATGAGGGGGAGTGCGAGGTCTCTAGTGGAAACTGCAACCAGACAAATCAAACCTGGCAATGGACTTGCGAGTAA
GTCAAGATCCACCCTCAATTTGCTTTGCTTGAGAGTTTGAAGAACCAGCTCGGTGCCTTACTTCTTCACCTTCTGTTGAA
CAGGGTTGATGACGATTACTACTCCCAAGAAGCATGAGAAGGAGATCAGCCCTACTGAATCTGCCCTCCCAAAGGATGAA
AATGTCGAGCCCCTCGTCGCATTCAGCCGTCCGCCTCCTTTGCCACCGGTTCTAGGCCCCTTGATCGCGCTCTCGCTTTT
TCAGACTTCTTCTAGTGATGAAGACAGCAAATGAGTCGCCAGGTATGTGCAGATGTTGCCCATGCTCTTCTCAGTTTTTC
CGCAGCGT------A-----GTGACATAAAATTCAAAATTCTTTGCAGGGGGCTTGCTTGTTTGATCGCTGAGTTGGTTA
CTTTTCGGAGCCTGGTCGTGTATATAGTCAGAGGTTGTAGACATCATGTTGCTGTAGTAGTCTGGCAAGTACTACGAAAT
CTGAATAATGTAGTAGTCTTTTGTGTGACAATTTTTCAGACTGAACAAATTTCGAAGTCTGTCGCTGTGCAATGTTTTAT
TTCCTTGTGAATCCATATGGGCTCGTTCACGAGTTGCAGCAAACGTGCCAGAATAGCTACAACAACGCAGACGGTAAGAA
CCTCTAGCCGACCCCTAGAAAGCTATACTTACAACGGAGTAAAATTTCTAGTTTACCCCACTAAACCGGATCTAATTGAA
GTACCAAATCTGATAAGGGAGTAAAAAAAATTTGTTCCCGCTTATGTGAGATCAGCTAAAGATCCTCTAAGGTGATGTAT
TTCCTCTCCCGCTTCATTGCCTCAAAATGGCTCAGCCATGGGTTGGTACACCCCTTTTTCCATCAAAATGGCTCAGCCAT
GGGTTGGTACACCCTTTCCGTTTCACGGAGTGCCAGGGTTATCTTTGCGGCCTGCACGGAGATCACGCTTGGTGATGGGC
CATGGCTAAGTTTTGGCGTTCTAGATAATAATTAGAGCATCAATAGCTGGGCACCCTAAATCTGTCTTAAACGTCCAGCG
GCCTGCCCGGTCACCGACCGATCAAACAAAATTGACTCAGATGGGCGTCTTAAACGGGCATCCAATGCCCGAGCTGACCG
GCAACGTCATATCCAGCCCAAAAATGTGCCAGATATGGGGGCGCCCAAAAATGTGCCAGATATGGGGGCGCCCGGGAGCG
TCCACCCAGCCCGTTGCAGGTCGTAGCGATCTCACCTGCGGCGACTAAAGGTTTGTTCTTTGTCATCGGTGTATCCAAAT
TTTAG
>chr2B_1
TCACCGGTTTTTCTCTAG-TTATTGTTCTTT----TTTTCTTTGTTTTTCGTTGGTTTTCTGTTTCTTTTTTGTTTTTCT
CTAGTTTTTTTCTTCGGTTTTGTTTGTTTTTTCCTCGTTTTTCATTTGTTTTCTTTTGTTCTCTTTCAGGTTTTCATGGT
TGTTCTATAAACATTTTGGTATATATCTGATAC-----------------------------------------------
-----------------------------------------------------TTCTCAAGTACAATATTAACATTTATT
GAATACATGGTCAACATTTTTTTCAATATCTTTCGCAAAAAAACATTTTTTTTCAATATGCATTTAACATTTTTT-AATG
ATTGATTAATATTTTTCAAATACCAATTAATA-TTTTTCAATACATGGTCAACATTTTTCT-TTT------------A-T
TTTTTAAATTCTTGATTA---------------------ATATTTTTTAAAATACAAATTTAACATTTTTCAATACATCT
TCAGCATTTTTTCTATAAACATTTAGTTTTTTAAATGCTTGATTAACATTTTTGAAATACTAGATTAACA-TTTCTAATA
CATGGTCAATGTTTTTCCTATATACATCTTTAATCTTTTTTAAAAATCTTTGATTAACATTCTTCAAATACTAGATTAAC
ATTT-TTTAGTACATGGTAGACAGTTTTTTATAAACATATAACATTTTTTAAAA--------------------------
--------------------------------------------------------------------TGCTTGATTAGC
A--TTTTAAATACAAGTTTACATTTATTATTAGATGGGCAACAGATCTATAC----GCATTTAACACTTGTCAGAAAACA
ACTTTAACATTTTGTGAATGCATGGTCAACATTTTTCTATATAGATTAAGCAGTTTTTATATGCTTGGTTAATATTTTTA
AAATACTTATTTAACATTTTT-TTCGAATGCTTGGATTAATTTGTAATAAACACAGATCGGTGCAACT-----ATGATAA
GGGCTAGTCTCTCACGGGCCGGTAAGACTAATTTCAGTTAGATATACGGCCGTCCACACA---------GATCAGGCTCT
TCCATTGAGATAAGCCCGGCCCATATGGTCTGCCAGCGAAAAGATGA--CTGGTCTCCCCCGAGAAATTTCCAGATGTTT
CGCCTATCCTCCATAACCCAGATCAAGGGCACGCCATCATCATTTCATACGACTCTCCTGCGCAACGAGATCGAGGTATG
GCTTCCCGATCCCTCACGATTCACATCCGTGCTTTCGTAGTCGTAGGTCCGGTATTGCTGCATCCCACTTGCATCTCTTG
CGCGGGGGATTATAATTTGTTAGTACCTCAGATTTCTCTTGTTTTTGTTCTCGGTTGATTGTTCATTTGAGACGCAACGG
ATATGCGTTTGTGCGCATGGAAATGAGACTCCGGAAAATTCATGAAGGGACGGTATAATCGAAT-TTTTAGGATGGGGTG
TGCTAGTTCATGGTTTTGTTGATGCCTCCAAGATTTTGTTGTTCGTCGCAAACTTGGCCCGTTTCTTGTTGCTCTCTGAA
TTCCTGTGCAAGGTTAATTGTTCTTTCTGCATGACCCTTTCTGTATAATTGACCGTATATGTATTTGTGGTACGTTTGGA
GATACCAAACATATCACTTGTTGCATGCTTATTCCCATGAATCTGTTCGTTGAGTAGAGATTGCAGGCAGCAAGCGCACG
AATTCCATGAGGGGAAGCGCGAGGTCTCTAGTGGAAACTGCAACTAGACAAATCAAACCCGGAAATGGACTTGCAAGTAC
GTCAAGATCCACCCTCAATTTGCTTTGCTTGAGAGTTTCAAGAACCAGCTTGGCGCCTTACTTCTTCACCTTCTGTTGAA
CAGGGTTGATGACGATTACTACTCCCCGGAAGAACAAGAAGGAGATCAACGCTACTGAATCTGTCCTCCCAAAGGATGAA
AACGTCGAGCCCCTCGTCGCTTTCAGCCGGCCGCCTCCTTTGCCACCGGTTCTAGGCCCCTTGATCGCGCTCTCGCTTTT
TCAGACTTCTTCTAGTGATGAAGACAGCAAATGAGTCGCCAGGTATGTACAGATGTTGCCCATGCTCTTCTCTGTTTTTC
CGCATCTCCGCAATGATGCCGTGAAATCAAATTCAGAATTCTGTGCAGGGGGCTTCCTTGTTTGATCGCTGAGTTGGTTA
CTTTTCGGAGCCTGGCCGTGTATATAGTCGGAGGTTGTAGACATCATGTTGCTGTAGTTATCTGGCAAGTACTACGAAAT
CTGAATAATGTAGTAGTCTTTTGTGTGACAACTTTTCAGACTGAACAAATTTCGAAGTCTGTCACTGTGCAATGTTTTAT
TTCCTCGTGAATCCATATGGGCTCCTTTACAAGTTGCAGCAAACGTGCCAGAATAGCTACAACAACGCAGTCGGTAAGAA
CCTCTAGCCGATACCTAGAAAGCTAG---TACAACCGAGTAAAATTGCTAGTTTACCCCACTAAACCGGATCTAAATGAA
GTACCAAATCTGATAAGGGAGTAAAAAAATTAGTCCTCCGC---------------------------------------
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>chr7A_287
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-----------------------------------------------TAATATTTTTCAAATACAAGATTAACATTTATT
GAATACATGGTAACA----------------------------------TTTTTTATATACATTTAACATTTTTTGAATG
GTTAGCTAATTTTTTTAAATACTATATTATCATTTTTTGAATACATGGTCAACATTTTTTTCTATACACATTTTACAGTT
TTTTCAAATCCTTGATTA---------------------ACATTTCCCAAAAAACAAGTTCAACAT--------------
----------------------------------------------------------------------TTTTTCAACA
AATGGTCAATATATTTTCTGTACACATTT--AACATTTTCTCAAAATACTTGATTACAAT--TTCAAAAACTAGATTAAC
ATATTTTAAATATATTGTCAACA--TTTTCATACACATTTAATATTTTTTTCAAATGTTTCGTTAACATTTTGCAAATCT
AAGTTTATTTTTTTAATACATGGTCAACAATTTTTCTATACACGGTCAACAAAATGATATTTTTCCAATGCTTGTTAACA
ATTTTTTAAATACAAGTTTATA----------------------------------------------------------
--------ATTTTTTGAATACATGGTCAACATTTTTCTATATGCATTTAACATTTTTCAAGTGCTTAATTAACATTTTTA
AAATACTTGGTTAACATTTTTTTTCAACTGCTTGGATTAA----------------------------------------
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>chr2D_1495
ATCTAC--------------------------------------------------------------------------
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-----------------TTCTTGCATGCTTATTCCCGTGAATCTGTCCTTTGAGTAAACCGTGCAGGCAGCTAGCACACC
GATTCCATGAGGGGAAGCGCGAGGTCTCTAGTTGAAACCGCAACCAGACAAATCAAACCTGGCAATGGACTCGCAAGTAT
GTCAGCATCCACCTTCAGTTTGCTTTGCTTGAGAATTTCAAGAATCAGCTGTCGGTGTCTCGG-TTTACCTTGTGTTGAA
CAGGGGTGATGACGATTACCACTCCCAAGAAGCACGAGAAGGAGATCAGCCCTACTGAATCTGCCCTCCCAAAGGATGAA
AACGTCGAGCCCCTCGTCGCTTTCAGCCGGCCGCCTCCTTTGCCACCGGTTCTAGGCCCCTTGATCGCGCTCTCGCTTTT
TCAGACTTCTTCTAGTGATGAGGACAGCAAATGAGTCGCCAGGTATGTGCAGATGTTGCCCATGCTCTTCTCTGTTTTTC
CGCAATGATGCCACA-----GTGACATAAAATACAGAATTCTGTGCAGGGGGCTTGCTTGTTTGATCGCTGAGTTGGTTA
CTTTTGGGAGCCTGGCCGTGTATATAGTCAGAGGTTGTAGACATCATGTTGCTGTAGTAGTCTGGCAAGTACTACGAAAT
CTGAATAATGTAGTAGTCTT--GTGTGACAACTTTTCAGACTGAACGAATTTCAAAGTCTGTCGCTGTGCAACGTTTTAT
TTTCTTGTGAATCCATATGGGCTCGTTTACAAGTTGGAGCAAACGTGTCAGAATAGCTCCAACAACGCAGACGGTAAG--
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>SNPs
----S------SSSSSSSS------------SSSS------------------------------------S--------
----------------S---------------------S------------------------S--S----S-S---S--
-------------------S--------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------S-S-------------
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--------------------------------------S-----------------S---------S-------SSS---
-----------------SSSSSSSSSSSSSSSSSSSSSS-S---------------SS---------S---S-----SS-
-S-SS---S----------------------------S---------------S----S---------------------
--S----------------------------S----------S----------------------S--------------
----S--S-------------SSS----S--------------------S------------------------------
----------------------------------------------------------------------------S---
-------------------------------------S------S-S---SSSSSS-----------------S----S-
------S----------------------------------------------S------------S------------S
-----------------------------------------------------------S--------SSSSS-------
-S-----SS-S-S----------------S--------SS-----SS-S-S-S-SSSSSSSSSSSSSSS----S------
------S-------S-S------------------------------SS-------------------------------
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---------------------------------S--S----S----------------------SS--S----S----S-
---------------------------------------------------S-S------------------------S-
------S-S-S-------------------SS-------SS-------------S-S--SSSSSS--------S------
-------------------------------------------------S-S---------------------S------
--S-----------------------------------------------------------------------------
-------------------------------S---------------------------------------S--------
--------------S--S--------------------------------------------------------S----S
--------------------------------------S-----------S--S--------------------------
----------------------------------S---------------------------------------------
--S-----------------S--------S--------------------------------------------------
------------------------------------------------------------------------S-------
----S--S---------------------------S------S-------------------------------------
---------------S----------------------------------------------------------------
-------------------------------S------------------------------------------------
---------------------------S--S-------------------------------------------------
-----------SS------------SSSS------S----------S----------------------------S----
-----------------------------S-SSSSSS----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS
>forward_1207
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-------------------------------------------------------------------GGGATCGGGCTCT
TCCATTC-------------------------------------------------------------------------
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>reverse_3137
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----------------CAGGTCGTAGCGATCTCACC--------------------------------------------
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