>input_sequence_65504
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--ATGGACGTGGACTCGGCGCCGGCGCTGAAGAGGAAGGGCGCGGACGCGCCGGAGCTGTGGCTGGACGACGACGTCGGC
CCTGGGTTCCCGGTCGCCTCCCGCGCCACCAAGATCCGCCGCCTGGTACGTGCT-------TAGTGACCCAGTGCGGCTC
CCTCTCCCTGTCTCCCCGTTCTCCCCTTCTCGAATTTTTTGCGCTAATCAAGCGGTGCCGGTTCTTGTGTTTGGTCGTTG
GTGTGCGCAGGACCCGGACATGATGCCCGTCGTGCCCGGCGCGTTCGTGCCGCCACCGCCACCGGGAACGCAGCT---GC
CTGTGGCAGGCTTCGGGGTGGTGGAGGAGGCGCCGATGTGCGGCGACGTGGCGGTGGTGCCGGTGGACATGGCGACGGCG
CCGCCGCTGCCGGCGAACGAGGAGCGGGCGATCGTCTTGTACCGGCCCGCCGAGGCCGAGCGCAGGCTGCTGCTCGGCCC
GCTCCGGCCGGGCGGCCATCTCCGCGTCAGCCCCGAGTGGATCCAAGCGCTCAACGGTACGTGCCTCCGCGCCTTCCTCC
CTTCCCTCGAGTCACGCTCGTAATTAATTTGG-CCTCATGCCTCTTGG--------------------------------
--------------CTGCTTGGATCAAAG-AATCTAATCCGCAAGTCGATCCGATTAAGCAGGCACGACGCTGCAGGAGG
CGAGCAGCCGCCGCGCGCTGTTCGAGGGGCTCGCCGGAGCCGAGAGCTCCAACCTGGCCATGGTCCCCTGGGCGCCGCCC
CGCGCCCAGGCGGCGTCCATGGCCGAGGAGATGATGGAGGCCGAGGACGGCGAGGGCGCGTCCATGGAGGTGGAGCAGGA
CAGGGCCGAGCAGCAGCTCCCGATGCCCCAGTGGCCGCAGCAGCAGCAGC------------ACTACATGGTGCAGCAGC
AGCCGATCCCGGTGGCGTGGTCATTGTGA---------------------------------------------------
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>chr5B_1_TraesCS5B01G272900
AGGACTGGTGAGCAGAAGGCGGACATCCTGACCAAGTCACTTGGTCGTGTCCGGTTCCAGGAGCTGCGCGACAAGGTCGG
GACCATCAACACCAAGCTTCTTCGACAAGGTTGAGGGGGAGAATGTTGGGTCAACCTTGGTCAGCAACATTTACACAGAT
GCATGCATGGTTGCATGTCGGCAGCAGTAGCTGTTATTTAGCAAGGTAGTAATGGGCAGGTCGGCAGCAGCAGTAG----
-------------------------------------------------TTGCGTGCCCTACTAGCTAAGATGTCAGGGT
AATGTCAGGATAGAATTTAAGGATAACATGCACTTAATGCATGGCAGTGCGGTTAGGAATTTTCTTCCTTGTTCACACTA
GTAGTACTAGTCCAGATACACTATATCTATCAATGCCGGTTGTGGC--------------------ATAGTCGGTTTGGC
A--ACCTATAAAAAGACCTGTGTA-CCTCCGGTTGTAAGCATTCCATTCTGATCAATACAAGGCAATCAGCCTCCGGTAC
TCCACTCCGGTGCTTGTGTGTGTGCGTTATAGACTGCACTAGCTGCAGTGTTTTTTCG----------TATATCAGTACA
CC------AGTTCAGTACACCATTGGTAGTTCGGGCCAACAGGCTTTGCTACACCTACGTGACTTTACGTGCAAAGGCGG
GTTACGAGGTGATTTGTCAGGTTTTAGGTCTAGCATCATTTTTGCAGATGGAGCGACGAAGAACTTCTTTCTGTAGCCAT
CAGACACGAGGAGCGCGCGAGAAATGGAAAATATCTAGGCAAACAGCGCGGGAGCCACCCGCGGAAACAATCCCGTGCGC
ACACGTAGGCACGGGAAGGAACAGAGGAGACGTTCTAGAGGCGTCGCGAGCGCCAACCCCCGAACCTTCTCCAAATCTCC
ATTCCCCCCTTTCTTAACACTCGCCGCCGCCGCCGCCGCCA---------CAGAACTCCCACAC----GACATCCACTCC
CTTCGCCCTGCTCTGGATTGAGTGATTAGCTTCTCGATTCGATCAGCACCGGGGCCAGCCGATCG---------------
--ATGGACGTGGACTCGGCGCCGGCGCTGAAGAGGAAGGGCGCGGACGCGCCGGAGCTGTGGCTGGACGACGACGTCGGC
CCTGGGTTCCCGGTCGCCTCCCGCGCCACCAAGATCCGCCGCCTGGTACGTGCT-------TAGTGACCCAGTGCGGCTC
CCTCTCCCTGTCTCCCCGTTCTCCCCTTCTCGAATTTTTTGCGCTAATCAAGCGGTGCCGGTTCTTGTGTTTGGTCGTTG
GTGTGCGCAGGACCCGGACATGATGCCCGTCGTGCCCGGCGCGTTCGTGCCGCCACCGCCACCGGGAACGCAGCT---GC
CTGTGGCAGGCTTCGGGGTGGTGGAGGAGGCGCCGATGTGCGGCGACGTGGCGGTGGTGCCGGTGGACATGGCGACGGCG
CCGCCGCTGCCGGCGAACGAGGAGCGGGCGATCGTCTTGTACCGGCCCGCCGAGGCCGAGCGCAGGCTGCTGCTCGGCCC
GCTCCGGCCGGGCGGCCATCTCCGCGTCAGCCCCGAGTGGATCCAAGCGCTCAACGGTACGTGCCTCCGCGCCTTCCTCC
CTTCCCTCGAGTCACGCTCGTAATTAATTTGG-CCTCATGCCTCTTGG--------------------------------
--------------CTGCTTGGATCAAAG-AATCTAATCCGCAAGTCGATCCGATTAAGCAGGCACGACGCTGCAGGAGG
CGAGCAGCCGCCGCGCGCTGTTCGAGGGGCTCGCCGGAGCCGAGAGCTCCAACCTGGCCATGGTCCCCTGGGCGCCGCCC
CGCGCCCAGGCGGCGTCCATGGCCGAGGAGATGATGGAGGCCGAGGACGGCGAGGGCGCGTCCATGGAGGTGGAGCAGGA
CAGGGCCGAGCAGCAGCTCCCGATGCCCCAGTGGCCGCAGCAGCAGCAGC------------ACTACATGGTGCAGCAGC
AGCCGATCCCGGTGGCGTGGTCATTGTGAAGTGCCGCCGGTGTAGTGTCTGG----AGGA----GAATCCGTAGGTGCAG
GTGTCGGTAGTAGACTA--------GTAGTTTTGGTCTGCGCCACTGCTCTGGTTTCCATGGTGCGAGCAGATGAGGTGC
GGAGAGCAGGAGACGGCCAGATGACACCGTCCGGTTTAGCGGGA-GGGGGCGACGGTGGTCTCGTC-----AGTAGGTCC
G----AACACTAGACAGGAGA--------ATGGATGGATAGCCTTCCAAGGGCAGCAAGATCAGTGTGGTTCTCTTCCAT
TTTTGTTTGGACCAGAGCA------AGAGGAGGTGTTTGTTGTATCCTTGGGCCGTCCATGGCATGATCCTCTATCGTTT
GTTCAATCGAGCCCCAAAGTCACAGAAAAGTTTACCAAAAAAGTAGTCCTAGTTGTGTGCATTTCGCCTTGCTCTGTTTT
TCAAGTGCTCGCAGTTGAGAATTTTCTAGCACCAACGCTGAGATAAGTACTCCCTTCGATTACAAATACTCCCTCCGTTG
CAAAACACTTGTCATGGTTTTAGTTTAAATTTGAACTGAATTGAAAACACTACAACCACACCAAGTAGTTTGGAACTGAG
AAAGTAATATAAGATGTTCTAACCTTTTCTGTAAATGGGATGTATATATCACGTTTTATTGGAGTGCGGCGTTTTGGTGT
CCGGGCTCAGACGAGCCCGGGCATGAACAGTAAAGCCATAAAAATAAAATAAAAATCAAATTTATTATGATGCAATATGC
TCAAATGCGTGAAAATTATGCAAAATTTCATGAAGTTTGGACAAGCTAGAAGCTCGCGGCAAAAGAAAGACAAATTCTAG
TTATGTGAGAAACATTTGAAAACGGGTCTGTCTAGGATATTCACTTTTTGTGGTCTTTTTTTTCCTAGTTTTTGTTTTTG
TTGCTACATTATATATTTGTGCGAGCTTAGATGTGACATCCTTAAAAAACATCTAGATGTGAATTAGACAAACTGTTTGA
GAACAGCACATTGTTTGTTCATAAATGCA
>chr3B_2
-GGACTGGTTAGCAGAAGGCGGACATCCTGACCAAGTCACTTGGCCGTGTCCGGTTCCAGGAGCTGCGCGACAAGGTTGG
GATTATCGACACCAAGTGCCTTCGACAAGGTTGAGGGGGAGAATGTTGAGTCAACCCTAGTCAGCAGCAATTACACAGAT
GCATGCATGGTTGCATGC-------------------------------------------CGGCAACAGCAGTAGCAGC
AAATTACTTACCTACGAAGTAAAACGGCAGGTTGGCAAGTCGGCAACACTTGCGTGACTTACCAGTTAAGGCAAGCTAGC
TAGTA-----------------------------------------------------------------------ACTA
GTAGTAGTTTCTAGTCTAGTACACGTATGAGCTGAGGTGGGCAGCTAGTAGAAATATCTTAGTTCTATAGTCGGTTTGTA
ATCACCTATAAATAGGTCCCAAGCCCCTCCGGTTGTAAGCATTCCATTTCGATCAATACAAGGCAATCAGTCTCCAGTAC
TCCACTCCGGTGCTTGTGTGTGTGCGTTATAGACTGCACTAGCTGCAATGCTTTGGTCATCTTCCGTATAGATCAGTACA
CCACTATTAGTTCAGTACACCACTAGTAGTTTGGGCCAACA---------------------------------------
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>chr5A_678
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-------------------------------------------------GGAGTGACGGACAACTTCTTCCCGTAGCCAT
CGGACGCAACAAGCGCGCGAGAAATGGAAAATATCTAGGCGGACAGCGCGGGAGCCACCCGCGGAAACAATCCCGTGCGC
ACACGTAGGCGCCGGAAGGAACAGAGGAGACGTTCTAGAGGCGTCGCGAGCGCCAACCCCCGAACCTTCTCCAAATCTCC
ATTCCCCC-TTTCTTAACACTCGCCGCCGCCGCCGCCGCAGCAGCAGCAGCAGAATCCCCACACGACAGACAACCGCTCC
CCTCGCCCTGCTCTGGATTGAGTGATTAGCTTCTCGATTCGACCAGCACCGGGGCCAGCCGATCGACGGCCGCTCGTGAT
CGATGGACGTGGACGCGGCGCCGACGCTGAAGAGGAAGGGCGCCGACGCGCCGGAGCTGTGGCTGGACGACGACGTCGGC
CCCGGGTTCCCCATCGCCCCCCGCGCCACCAAGATCCGCCGCCTGGTACGTGCCTGCCAA--------------------
--TCTGACTTGCTCGCTGTTCTCCCCTTATCGGATGTGCT---------AAGCGGTGGCGGTGCTT-TGTTTGGTTCTGG
GTGTGCGCAGGACCCGGACATGATGCCTATCGTGCCCGGCGCGGTCGTGCCGCCACCGCCACCGGGGACGCAGCC---GC
CGGTGGCGGGCTTCGGGGTGGCTGAGGAGGCGCCGATGTGCGGCGACGCGGCGGTGGTGCCGGTGGACATGGCGACGGCG
CCGCCGCTGCCGGCCAACGAGGAGAGGGCGATCGTCTTGTACCGGCCCGCCGAGGCCGAGCGCAGGCTTCTGCTCGGCCC
GCTCCGGCCGGGCGGCCATCTCCGCGTCAGCCCCCAGTGGATCCAAGCGCTCAACGGTACGTGCCCTTGCCTC-------
----------------------------------------CCGTTGGAGCTTCGCTTCCGGGCGGGTTCAATTCCATTGC
TGTGATGTCCCCAACTGCTTGGATCGATGTAATCTGATCAGCGATTCGATTCGATTACGCAGGCACGGTGCTGCAAGAGG
CGAGCAACCGCCGCGCGCTGTTCGAGGGGCTCGCCGGAGCCGAGACCTCGAACCTAGCGATGGTCACCTGGGCGCCGTCC
CGCGCGCAGGCGGCGTCCACGGCCGCGGAGATGATGGAAGCCGAGGACGGCGAGAGCGCGTCCATGGAGGTGGAGCAGGA
CAGGTCCGGGCAGCAGCTCCCGATGCCCCTGTGGCCGCAGCAGCAGCCGC------------ACTGCATGGTGCAGCAGC
AGCCCATCCCGGTGGCATGGTCATTGTGAAGCGCCTCCGGTGTAGCGTTAGGAGAAAGGA----GAATCCTTAGGTGCAG
GTGTCTGTAGTAGTGTTCTTCAACGGTGGTTTTGGTCTGCGGCGCTGCTCTGC-CTCCATGGTGCGAGCAGAGGTGGTGC
GGAGAGCAGGAGACGGCCGGTTGACGCCGT-CGTTTTAGCGGGAGGGGGGCGACGGTGGTCTCGTCTCGCCAGTGGGTCC
GAAGTAACAATCGACAGGAGACTGTTCATATGGATAGATAGCCTTCCAAGGGCA--AAGATCGATGTGGCTATCTTCCAT
TTTGGTTTGGACTTTGGACCAGAGCAGAGGAGGTGTGTGCTGTATCCTTGGGCCGTCCATGGCGTGATCCTCTATCGTTT
GTTCAATCGAGCACCAATGTCACAGAAAAGTTTACCAACAAAGTAGTCCTAGTTGTGTACATTTGGCCTTGCTCTGTTTT
TCAAGTGCTCGCAATTGAGAATTTTCTAGCACCAACGTCGAGACAAGCTAC-----------------------------
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>chr5D_678
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-------------------------------------------------GGAGTGACGAACAACTCCTTTCTGTAGCCAT
CAACCGCAACGAGCGCCCGAGAAACGGA-AATATCTACGCAGACAGCGCGGGAGCCACCCGCGGAAACAATCCGGTGCGC
ACACGTAGGCACGGGAAGAAACAGAGGAGACGTTCTAGAGGCGTCGCGAGCGCCAACCC--GAACCTTCTCCAAATCTCC
ATTCCCCCCTTTCTTAACACTCGCCGCCGCGGCCACCGCC------GCCGCAGAACTCCCACACGACAGACAACCGTTCC
CCTCGCCCTGCTCTGGATTGAGTGATTAGCTTCTCGGTTCGATAGGCACCGGGGCCAGCCGATCGACGGTCGGTCGTGAT
CGATGGACGTGGACGCGGCGCCGGCGCTGAAGAGGAAGGACGC------GCCGGAGGTTTGGGTGGACGATGACGTCGGC
CCTGGGTTCCCCGTCGCCTCCCGCGCCACCAAGATCCGCCGCCTGGTACGTCTCCCCTAGCTAGCGACCCGACCCGACTC
CC--------TCTCCCCGTTCTCCTCTTCTCGAACTTGCT---------AACAGGCGGTGGTGCTTGTGGTTGGTCTTGG
GTGTGCGCAGAACGCGGATGTGCTGCCTGTCGTGCCCGGCGCGGTCGTGCCCCCGCCGCAGACGCTCCCACAGACGCAGC
CGGTGGCGGGCTTCGGGGTGGTGGAGGAGGCGCCGATGTGCGGCGAC---------GTGCCGGTGGACGTGGCGCCGCCG
GAGGTGG---CGGCCAACGAGGAGAGGGCGATCGTCTTGTACCGGCCCGCGGACGCCGAGCGCAGGCTTCTGCTGGGCCC
GCTCCGGCCCGGCGGCCATCTCCGCGTCAGCCCCGAGTGGATCCAAGCGCTCAACGGTACGTGCCTCCGCGCTTTCCCCC
ATTTCCTAGAGTTAAGCCGTTAATTAGTTTGGGGCTCATTCCGTTGGAGCTTCGTC--------GGTTCAATTCCATTGA
TGTGTTGCT---------TTGGATCAACG-AATCTAATCTGCAAGTCGATTCGATTACGCAGGCACGACGCTGCAAGAGG
CGAGCAACCGCCGCGCGCTGTTCGAGGGGCTCGCCGGAACGGAGACCTCGAACATGGCGATGGTCCCCTGGGCGCCGCCC
CGCGCGCAGGCGGCGTCCACGGCGGCGGAGATGATGGAGGCCGAGGACGGCGAGGGCGCGTCCATGGAGGTCGAGCAGGA
CAGGGTCGACCAGCAGCTTTCCATGCCCCAGTGGCCGCCGCAGCAGCAGCAGCAGCACTACAACTACATGGTGCAGCAGC
AGCCGATCCCGGTGGCGTGGTCATGGTGAAGCGCCGCCAGTGTAGTGTTAGGAG----GA----GAATCCGTAGGTGCGG
GTGTCCGTAGTAGTGTTCTTCAACGGTGGTTTTGGTCTGCGGCGCTGCTCTGC-TTCCATGGTGCGAGCAGAGGAGGTGC
GGAGAGCAGGAGATGGCCTGTTGACGTCATCCGTTTTAGCGGGAGGGGGGCGACGGTGGTCTCCAC-----AGTGGGTCC
G----AACACTAGACAGGAGA-----------------------------------------------------------
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>chr5A_1444
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-------------------------------------------------------CCGAGCGCAGGCTGCTGCTAGGCCC
GCTCCGGCCCGGCGGCCATCTCCGTGTCAGCCCGGAGTGGATCCAATCGCTCAACGGTACGTGCCTCCGCGCCTTCCTCC
CATTCCTCGAGTCACGCTCTTAATCAAATTAG-GCTCATTCATCTTTC--------------------------------
--------------CTGCTTGGATCAACG-AATCTAATCTGCAAGTCGATTCGATCACGCAGGCACGACGCTGCCAGAGG
CGAGCAACCACCGCACGCTATTCGTGGGGCTTGCTAGAGCCGAGAGCTCCAACCTGGCGATGGTCCCCTGGGCGCCGCCC
CGCGCCCAGACGGCGTGCACGGCGGCAGAGATGATGGAGGCCGAGGACGGCGAGGGCACGTCCATGGAGGTGGAGCGGGA
TAGGGCCGACCAGCAGCTCTCGATGCCCCAGTG---GCAGCAGCAGCAGC------------ACTACATGGTGCAGCAGC
AGCCGATCCCGGTGGCGTGGTCATGGTGAAGCGCCGCCGGTGTAGTGTTAGGAG----GAAGGAGAATCCGTAGGTGCAT
GTGTCCATAGTAGTGTTCTTCAACGGTGGTTTTGGTCTGCGCCGCTGCTCTGC-CTCCATGGTGCGAGCAGACGAGGTGC
GGAGAGCAGGAGATGGCCTATTGACGCCGTCCGTTTTAGCGGGAGGGGAGCGACGGTGGTCTCCAC-----AATGGGTCC
G----AACGCTAGACGGGAGA-----------------------------------------------------------
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>SNPs
S--------S----------------------------------S--------------------------------S--
--SS---S--------SSS-----------------------------S-------S-S-------S--S----------
-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S-------------
--------------------------------------------------------S-S---S--S----SSSSSSSS-S
S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----
------S-SSSSSSSS--SSSS-SS-S-SSSSSSSSSS-SSSS-SS--------------------------------SS
------------S--SS-SSSSSS------------------------SS--------------------S----S----
-----------------------------------------------S--S---SSSS------------S---------
----------------------S-S------S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S------S-------------------
-----S-S-S-------------------------------S--------------------------------------
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----------------------------------------S-------------------------------S--S----
-S------------------------------------------------------------------------------
--------------S----------------------------S------------------------------------
-----------S-----------------------------------------S----------S-----SSSS--S---
-----SS--S---------------------------SS-SSSSSSSSS--------S----S-------------S-S-
---------------------------S---------------S----------------------S-------S-----
-S-----S----------------------------------------S-------------------------------
--------------S---------S-------------------------------------------------------
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---S---------------S-------------S-----S-------S--------------------------------
---------------------------S-----------S----------S------S-----------------S----
------S---------------------------------------------------S---------------------
-------------------S-----S------------------------------------------------------
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-------------------------------S----------------SS------------------------------
-----S-------SS-S----------S---------------S--------SS------------------S-------
------------------S-S----S-------S----------------------------------------S-----
-----------------------------------S------------------SS------SS-----S-S--------
---S--------SSSS-SS-----------------S--S-----------------------S----------------
------------S----S--------------------S-------------------S-----S---------------
-------------S-----------------------SS----S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_381
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-----------------------------------------TGGCAGTGCGGTTAGGAATT-------------------
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>reverse_2214
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-----------------------------------------------------TTTCCATGGTGCGAGCAGAT-------
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