>input_sequence_65502
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--------------------------ATGAGCCAGGGGCAACAGAGGAGGCCGTCGTCAGACCAAGCCCAGGCGGGCGGC
GGCGGGCAGGGCCAGGGACAGGGAGGAGGCGCCGTCCGCTACGGCGACGTGTTCCCGGCCGTGACCGGCGGCCTCGCGGA
GAAGCCCGTGGCGCCGCAGGACGCGGCCACGATGCAGTCGGCCGAGAACCTCGTTTTCGGGGAGACGATCAAGGGCGGGC
CGGCGGCAGCCATGCAGTCCGCGGCCATGCGGAACGAGCGCATGGGCCTCGTCGGCCACGACCAGGCCACGGACGCCACC
GCCGAGCAGGGTGTCTCCGTGTCCGAGACCCGCGTCCCCGGCGGGCGTATCGTCACCGAGTTCGTCGCCGGGCAGGCCGT
GGGCCAGTACCTCGCGCCGGATGATGCCGCCGATGCAGGCGGAGCCGGTGGCGACGACACGAAGATAACTATCGGCGAGG
CGCTGGAGGCGGCAGGTTACTCGGCCGGAGGCAGGCCGGTGGAGCGCAGCGACGCGGCGGCCATCCAGGCGGCCGAAGTG
CGGGCCACCGGGCTGGACGTCAATATCCCTGGTGGCCTGGCCGCGCAGGCGCAGTCGGCCGCCGACGCCAACGCCTGGGC
CGCGCGCGACGATGAGAAGGCCAAGCTCGGCGACGTGCTCTCGGTATGTCTCTAGCATGTCATGCACATCGATGCTACCA
GTACACGTATCCTTGAATCCAT-GATGTTACTGACGAC------------GATGGTCGACCCGCGTGCATGCAGAATGCG
ACGGCGAAGCTG------------------------------------GTTGCGGACAAGGAGGTGGAGGCCGACGACGC
GGCGAGGGTGGCCTCGGCGGAGACCCGAAACAAGGATGACAAGACGGTGAGGCCGGGAGGGATAGCAGCGTCCGTGGCTG
CGGCGGCGCGGCTCAACAAGCAGGGCGCATAG------------------------------------------------
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>chr4B_1_TraesCS4B01G275300
TGATACCAATTTTAAAAGGTCAAATTAAAATCCCTTTTTTATGAATGTTTACAACACATGTGTCTACAATCCCTAGAAAT
TTCGGATTAAAATTCGAAGTACACAAAGAGAAACAACAAAAAAAAAAATTCGGCATAATAGTATAAATAAAGACAAATGC
ATGAATAGTATCAAAACCTGAGTGCGGCTATTTGGCTCACAAACTCATCTGCTCTCGCTGTGAACAGTAAATTCGAATCA
AATACTAGAAAACTTTAAAAAATTCTAATTTTTTTCCATGGAAGATGTTTCAGTGTGTGATGTCCGCTCCAAATTTCAGT
TCATCCGAACATCTGAGTAGTTCGCAGCAAAGAAGACAA---------------------------AGCTACTCAAATGT
CCAAATAAGTTGAAATACTCAAGCATCATAATATAAAGAATAAGATTTTTCTCATTTTAAATTTTACTTAAATTTACTGT
TCACTATGTACAGATGAGTCCGGACGCAGAAATGAATATTCGGACAAAACCTGTACTAATTACATCCGTTTATATATATA
TTTGTTTCTTTATGTGTACTTTGAATTTTGATGTGATTTTCTTAGGACATGTAGACATATGCCTTGTGAACATCCTCAAT
TAAATACATGCCATGTAAGCAAATTTTTCTTAGAATGTGTTATGTTACTTGCTAAGTTACTTCCATTCTGAGCAGCCTA-
------------------------------------AAAAAACAAGCGCCACCGCTTTGCTGTCCACGCGCGCGCCACTC
CACGCTGCCTCCGCCGTCCAACCCTCCACCGCCTCCTCGCGCGCCACCTGGCGGCAAAGCCACGACGCGCCTCCCCTGCT
TCGCCTCCACGTCTCCGCCCACTCCCACACCTGTCTCCCTGTGGGCAGTCGCGCACGCCTTATATAATG--CATATCCAC
ACACGGTCCCTCCATGTCGATCGCAAGATTCAGCTGTACTACTCACCTAGCCACCCTACACACGCTCGGAGCAACGCGGC
AGATAACCAGACGCCTTCTCGGCAAGATGAGCCAGGGGCAACAGAGGAGGCCGTCGTCAGACCAAGCCCAGGCGGGCGGC
GGCGGGCAGGGCCAGGGACAGGGAGGAGGCGCCGTCCGCTACGGCGACGTGTTCCCGGCCGTGACCGGCGGCCTCGCGGA
GAAGCCCGTGGCGCCGCAGGACGCGGCCACGATGCAGTCGGCCGAGAACCTCGTTTTCGGGGAGACGATCAAGGGCGGGC
CGGCGGCAGCCATGCAGTCCGCGGCCATGCGGAACGAGCGCATGGGCCTCGTCGGCCACGACCAGGCCACGGACGCCACC
GCCGAGCAGGGTGTCTCCGTGTCCGAGACCCGCGTCCCCGGCGGGCGTATCGTCACCGAGTTCGTCGCCGGGCAGGCCGT
GGGCCAGTACCTCGCGCCGGATGATGCCGCCGATGCAGGCGGAGCCGGTGGCGACGACACGAAGATAACTATCGGCGAGG
CGCTGGAGGCGGCAGGTTACTCGGCCGGAGGCAGGCCGGTGGAGCGCAGCGACGCGGCGGCCATCCAGGCGGCCGAAGTG
CGGGCCACCGGGCTGGACGTCAATATCCCTGGTGGCCTGGCCGCGCAGGCGCAGTCGGCCGCCGACGCCAACGCCTGGGC
CGCGCGCGACGATGAGAAGGCCAAGCTCGGCGACGTGCTCTCGGTATGTCTCTAGCATGTCATGCACATCGATGCTACCA
GTACACGTATCCTTGAATCCAT-GATGTTACTGACGAC------------GATGGTCGACCCGCGTGCATGCAGAATGCG
ACGGCGAAGCTG------------------------------------GTTGCGGACAAGGAGGTGGAGGCCGACGACGC
GGCGAGGGTGGCCTCGGCGGAGACCCGAAACAAGGATGACAAGACGGTGAGGCCGGGAGGGATAGCAGCGTCCGTGGCTG
CGGCGGCGCGGCTCAACAAGCAGGGCGCATAGGCAGGCCTCTGCCGTGCGCGTACGTACGCGGCGTGTCCGCGTGTGCGA
GTGGTTTGCGGGTGCAGGCCGCCGGCTGCTCGAGTTTAGCGTGCCCTTTTGCAAGAAGTGTCAGTGTCCTTCGTACCAGC
GTCTAGTTCTCGTGCTTCTAGCTTTACCCGCGTCTTAGTTTCCGTAGTTCTAGTGCTTTTAGCTTAATA-AAGTGTT-CT
TGTGCTTCTAGCTTTTGGTTGAAGTCAAGTCTTA--GAACTTGTTGTAAAAATGTG---TAATTCCGCTGCTATCTCTAG
TTTTAAAACTTCTTGTAAAAATGTTATTCCGCCAAATCGGAGGAGTACCCTTTTCC--TTTCCCTTATTTCCTCGAGAAC
AAAGAAGCACAAATTGCAAAATAAGGAAGTGCTTTTTTAAGACGGAGGCAAAAAGTTCAAATGAAGCACGAACAAACTAC
AGCCTGCCGAACTCTTCAAATACACAACATCCACAGCCTGCCGAACTCTCCAAATACACAACATCCACAAAACCCCACAA
TCACACGGGCGGCCTACCAAACTCTCCAAATACAACATCCACAAAAACAAATACAACATCCACAAAAACCAACAGGACGG
CCTACCAAACTCTCCAAATACAACAAAAACCAACAGGGCGGCCTACCAAACTCTCCAAATACAACATCCACAAAACCCAA
CAACCGTACAAGCGGCCTGCCAAACTCTCCAAAAAACATTCACAAAACCTTACAACCTGCTGCCTGCCAAACTCTTCAAA
TACACAACATCCACAAATCAAACTCTTCAAATACACAACATTCACTCTTCAAATACACAACATCCACAAACCCTTCAACT
TCAACTGTCAAACTCCCTAAAAAACATTCACAAAACCTTACGACCACACATGCGGCCTGCCAAACTCTTCAAATACACAA
CATCCACAAATCAAAACATCCACAAATCAAACTCTTCAAATACACAACATCCACAAACCCTTCAACTGTTACTACGCCAA
G
>chr4D_2
-GATACCAATTTGAAGAGGTCAAATTTAAATCCATTTTTTATGAATGTTTACAAT-CATGTGCCTACAATCCCTAGAAAT
TTCGGATCAAAATTCGAAGTACACAAAGAAAAAAAACAAATTCAA--------CATAATAGTATCAATAAAGACAAATGC
ATGAGTAGTGTCAAAACCTGAGTGCGGCTATTTGGCTCACAAGCTCATCTACTCTCGACATGAACAGTAAATTCAAAACA
AATATTAGAAAACTTAAAAAAGTCCATTTTTTGCATGAAT---GATGTTTCGGTGCGTGAGGTCCGCTTCAAATTTCAAT
TCAGTTGGACATCTAAGTAGCTCTCAACAAAAAAGACAACATGTACTGTTGTGACCCAATTTGTAGAGCTACTCAGATGT
TCAAATAAACTGAAATACCGAAGCATCGTTCATACATTTT-----TTTTTCTGATTTTAGATTTTT-TTGAATTTACTGT
TCACTGGGG-CAGATGAGTCCGGACTCATAAATGAATATTCGGTGAAAACCTACACTATTTACATCCGTTTATATATT--
TTTGTTTCTTTATGTGTGCTTTGATTTTGATCTGAA-TTTCTTAGGACATGTAGACATATGCCTTGTGAACATCCTCAAT
TTTTTCGGAATTTTTCAAAACATTTATGTTTGACGTTTTAAGATCGGTATCATGAGAGCATATAAAAGGTAGTATCACAC
GATATTTTTCATATATTATAGTAGTAGTGTATTAAGAAAAAACAAGCGCCACCGCTTTGCTGACCACGCGCGCGCCACTC
CATGTTGCCTCCGCCGTCCAACCCTCCACCGCTTCTTCGGGCGCCGCCTGGCGGCAAAGCCACGACGCGCCTCCCCTGCT
TCGCCTCCACGTCTCCGCCCTCTCCCACACCTGTCTCCCTGTGAGCACTCGCGCACGCCCTATATAACCACCATATCCAC
GCATGATCCATCCATGTCGATCGCAAGATTCAGCTGTACTACTCACCTAGCCACCCTACACACGCTCGGAGCAACGCGGC
AGATAACCAGACGCCTTCTCGCCAAGATGAGCCAGGGGCAGCAGAGGAGGCCGTCGTCCGATCAAGCCCAGGCGGGCGGC
GGCGGGCAGGGCCAGGGACAGGGAGGAGGCGCCGTCCGCTACGGCGACGTGTTCCCGGCCGTGACCGGCGGCCTCGCGGA
GAAGCCCGTGGCGCCGCAGGACGCGGCCACGATGCAGTCGGCCGAGAACCTCGTGTTCGGGGAGACGATCAAGGGCGGGC
CGGCGGCAGCCATGCAGTCCGCGGCCATGCGCAACGAGCGCATGGGCGTCGTCGGCCACGACCAGGCCACGGACGCCACC
ACCGAGCAGGGCGTCTCCGTGTCCGAGACCCGCATCCCCGGCGGGCGCATCGTCACCGAGTTCGTCGCCGGGCAGGCCGT
CGGCCAGTACCTCGCGCCGGATGATGCCGCCGATGCAGGCGGAGCCGGTGGCGACGACACGAAGATAACGATCGGCGAGG
CGCTGGAGGCGGCAGGTTACGCGGCAGGAGGCAGGCCGGTGGAGCGCAGCGACGCGGCGGCCATCCAGGCGGCCGAAGTG
CGAGCCACCGGGCTGGACGTCAATATCCCCGGGGGCCTGGCCGCGCAGGCGCAGTCGGCCGCCGACGCCAACGCCTGGGC
CGCGCGCGACGATGAGAAGGCCAAGCTCGGCGACGTGCTCTCGGTATGTCTCTAGCATGTCATGCACATCGATGCTACCA
GTACACGTATCCTTGAATCCAT-GATGTTACTGACGAC------------GATGGTCGACCCGCGTGCATGCAGAATGCG
CCGGCAAAGCTG------------------------------------GTCGCGGACAAGGAGGTGGAGGCCGACGACGC
GGCGAGGGTGGCCTCGGCGGAGACCCGAAACAAGGACGACAAGACGGTGAGGCCGGGAGGGATAGCAGCGTCCGTGGCTG
CGGCGGCGCGGCTCAACAAGCAGGGCGCATAGGCAGGCCTCTGCCTTGCGCGTACGTACGCGGCGTGT--------GCCA
GTGGTTTGCGGGTGCAGGCCGCCGGCTGCTTGAGTTTAGCGTGCCCTTTTGCTTGAAGCGTCACTCTCCTTCGTACCAGC
GTCTAGTTCTCGTACTTCTAGCTTTACCCGCGTCTTAGTTTCCGTAGTTCTAGTGCTTTTAGCTTAGTTGAAGTGTT-CT
TGTGCTTCTAGCTT--GGTTGAAGTCGAGTCTTA--AAACTTTTTGTAAAAATGT---ATAATTCCACTGCTATCTCAAG
TCTTAAA-CTTCTTGTAAAAATGTTATTTCACCAAATCGGAGGAGTACCTTTTTTCCATTTCCCTTATTTGCTCGAGAAC
AAAAAAGTGCAAATT-----------------------------------------------------------------
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>chr4A_693
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------------------------------------AAAAAACAAGCGCCACCGCTTTGCAGACCACGCGCGCGCCACTC
CACGCTGCCTCCGCCGTCCAACCCTCCACCGCTTCCTCGCGCGCCACCTCACGGCAAAGCCGCGACGCGCCTCCCCTCCT
TCGCCTCCACGTCTCCGCCCTCTCCCACACCTGTCTCCCTGTGAGCACCCACCCACGCCGTATATAACCACCATACCCAC
GCATGATCCATCCATGTCGATCGCAAGATTCAGCTGTACTACTCACCTAGCCACCCTACACACGCTCGGGGCAACGCGGC
AGATAACCAGACGCCTTCTCGCCAAGATGAGCCAGGGGCAGCAGAGGAGGCCGTCGTCCGACCAAGCCCAGGCGGGCGGC
GGCGGGCAGGGCCAGGGACAGGGAGGAGGCGCCGTCCGCTACGGCGACGTGTTCCCGGCCGTGACCGGCGGCCTCGCGCA
GAAGCCCGTGGCGCCGCAGGACGCGGCCACGATGCAGTCAGCCGAGAACCTCGTGTTCGGGGAGACGATAAAGGGCGGCC
CGGCGGCCACCATGCAGTCCGCGGCCATGCGCAACGAGCGCATGGGCGTGGTCGGCCACGACCAGGCCACGGACGCCACC
GCCGAGCAGGGCGTCTCCGTCTCCGAGACCCGCGTCCCCGGCGGGCGCATCGTCACCGAGTTCGTCGCCGGACAGGCCGT
GGGCCAGTACCTCGCGCCTGATGATGCCGCCGATGCAGGTGAAGCCGGTGGCGACGACACGAAGATAACTATTGGCGAGG
CGCTGGAGGCGGCAGGTTACGCGGCGGGAGGCAGGCCGGTGGAGCGCAGCGACGCAGCGGCCATCCAGGCGGCCGAAGTG
CGAGCCACCGGGCTGGACGTCAATATCCCTGGTGGCCTGGCCGCGCAGGCGCAGTCGGCCGCCGACGCCAACGTCTGGGC
CGCGCGAGACGAGGAGAAGGCCAAGCTCGGCGACGTGCTCTCGGTATGTCTGTAGTATGTCCTGCACATCGACGCTACCA
GTACACATATGCTTGAATCCTTTGATGTTACTGACTGCGATGGTCAACCTGGTGGTCGACCTGCGTGCACGCAGAATGCA
ACGGCGAAGCTG------------------------------------GTTGCGGACAAGGAGGTGGAGGCCGCCGACGC
GGCGAGGGTGGCCTCGGCGGAGACCCGAAACAAGGACGACAAGACGGTGAGGCCGGGAGGGATAGCAGCGTCCGTGGCTG
CGGCGGCGCGGCTCAACAAGCAGGGCGCATAGGCAGGCCTCTGCCGTGCGCGTACGTACGCGGCGTGT--------GCCA
GTGGTTTGCGGGTGCAGGCCGCCGGCTGCTCGAGTTTAGCGTGCCCTTTTGCATGAAGTGGCACTCTCCTTCGTACCAGC
GTCTGGTTCTCGTGCTTCTAGCTTTACCCGCTTCTTAGTTTCAGTAGTTCTAGTGCTTTTAGCTTAGTTGAAGTGTTTCT
TGTGCTTCTAGCTT--GGTTGAAGTCAAGTCTTCTCAAGCTTTTTGTAAAAATGTATAATAATTCCACTGCTATCTCAAG
TCTTAAA-CTTCTTGTAATAATGTTATTTCACCAAATCGGAGGAGTACCTTTTCTTTATTTCCCTTCTTTGCTCGAGAAC
AAAAAAGTGCAAATT-----------------------------------------------------------------
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>chr4A_802
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-----------------------------------------------------------------CGCGCCTCCCCTGCT
TCGCCTCCACGTCTCC---------CACACCTGTCTCCCTATGAGCACCCACGCACGCCGTATATAACCACCATAACCAC
ACATGATCCATC-------------------------------------------------ACGCTCGGGGCAACGCGGC
TGATAACCAGACGCCTTCTCGCTAAGATGAGCCAGGGGCAGCAGAGGAGGCCGTCGTCTGACCAAGCCCAGGCGGACGGC
GGCGGGCAGAGCCAGGAACAGGGAGGAGGCGCCGTCCGCTACGGCGACGTGTTCCTGGCCGTGACCGGCGGCCTCGCGGA
GAAGCCCGTGGCGCCGCAGGACGCGGCCACGATGCAGTCGGCGGAGAACCTCGTGTTCGGGGAGACGATCAAGGGCGGGC
CGGCGGCCACCATGCAGTCCGCGGCCATGCGGAACGAGCGCATGGGCGTCGTCGGCCACGACCAGGCCACGGACGCCACA
GCCGAGCAGGGCGTCACCGTGTCCGAGACCTGCGTCCCCGGCGGACGCATCGTCACCGAGTTCGTCGCCGGGCAGGTCGT
CAGCCAGTACCTCGCGCCGGATGGTGCCGACCCTGCTAGGGGAGCCGCTGGCGACGATACGAAGATGACAATCGGTGAGG
CGCTGGAGGCGGCAGGTTATGCTGCAGGAGACAGGCCGGTGGAGCACAGCGACGCGGCGGCCATCCAGGCGGCCAAAGTG
AGAGCCACCGGGCAGGACGTCTATATCCCCGGGGATCTGGCCGCGCAGGCGCAGTCGGCCGCCGACGCCAACCTCTGGGC
CGCGCGCGACGAGGAGAAGGCCAAGCTCGGTGAAGTGCTCTCGGTATGTCTGTAGTATGTCCCGCACATCGACGCTACCA
GTACACATATGCTTGAATCCTT-GATGTCACTGACGACGATGGTCAACCTGATGGTCGACCTGCGTGCACGCAGAATGCG
ACGGCGAAGCTGGTTGCCCACAAGGAGCGGAATGCGACGGCGAAGCTGGTTGCGGACAAGGAGGTGGAGTCCGACGACGC
GGCGAGGGTGGCCTCGGCGGAGACCCGAAACAAGGACGACAAGACGGTGAGGCCGGGAGGGATAGCGGCGTCCGTGGCTG
CGGCCGCGCGGCTCAACAAGCAGGACGCATAGGCAGGCCTCTGCC---------------------GT--------GCCA
GTGGTTTGCGGGTGCCGGCCGCCGGCCGCTCGAGTTTAGCGTGTCCTTTCGCATGAAGGATCACTCTCCTTCGTGCCAGC
ATCTAGTTCTCGCGCTTCTAGCA-TACCAGCGTCTTAGTTTCTGTAGTTCTAGTGCTTCTAGCTTAGTTGAAGTG-TTCT
CGTGCTTGTAGCTT--ACTTGAAGTCAAGTCTT---AAACTTACTGTAAAAATG-----TAATTCCACTGCTATC-----
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>SNPs
S-----------S--S----------S------S--------------------SS------S-----------------
-------S---------------------S---S------SSS--SSSSSSSS-----------S---------------
----S----S--------------------------------S-------S------SSS--------------S--S--
----S----------S-----S-S-SSS----SSSSS-SSSSS--------S---S----S-------S---------S-
---SSS-S------S-----S--S--S----S-------------------------------------------S----
S-------SS--------SS-------S-SSSSSS-SSSSSSSSS-------S------S-----SS--S----------
-----SS-SS---------------S--S--------------SS-------SS----S------------------SSS
-----------------S------S---SSSSSSS-S-------------------------------------------
-SSS-SSSSSSSS-SS--SSS-S--S-SS--SSSS-S-SSSSSSSSSSS-SS-S--SSSS-SSS-SSSSS--S-S-SS--
--------------------------------------------------------------S-----------------
--------------------------------S-----------------------------------------------
--------------------S----------------------S---S-----------S-------SS-----------
---S-S---S----------------------------------------------------------------------
---------------------S------------------S-----------------S---------------------
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------------------------------------------------------S-------------------------
-----------------------------------------------S--------------------------------
-----------S-----------------------------------S--------------------------------
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--------------------S----S------------------------------------------------------
--S-----------------------------------------------------------------------------
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------------------------------------S-------------------------------------------
--------------------------------------------------------------------SSSSSSSS--S-
-----------------------------------------------------S---------S-S--------------
------------------------------------------------------------------S-S-----------
--------------SS--------------------S-----S------------S----------S----------S--
-S-----S--------------------S-S------------------S----S---------------S---------
---S---SS------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S
>forward_309
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-------------------------------------------------TCAGTGTGTGATGTCCGCTC-----------
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>reverse_2351
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------------------------------GCCAAATCGGAGGAGTACCC------------------------------
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