>input_sequence_65501
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----------------------------------GCTCCATCTTCACCACCG-TCATCGTCAACGAGAAGCAGCGGCGAG
CAGCAGCGCCCGGCCAAGAGACGAGACGAGACGAGAGAACAAGTGTTGCCATGGCCGCGATGGAGAGCAAGAGCCGGAGG
TTCGCGCTGGCGTGCGGCGTCCTCAGCCAGTACGTCAAGGCGGAGCAGAAGATGTCCTCCT---CCGCCGTCGTCGCCCC
GCCCCCGCGCGCCCCGCCGGCCACCACGCTCAGCCTCATGCCCGGCGCCGACGTCGGCCAGGACCAC---GCCGCGGCGG
CCGCTGAGGAGGCGGGCC------CGGCCACGCCGCTCACCATCTTCTACGGCGGCAGGGTAGTCGTCTTCGAGGACTTC
CCCGCGGACAAGGCGGCCGAGGTCATGCGCATGGCCACCACCGCCGGCGTCGAGCGCGCGGCCGCCACGCCCGCCCCGGC
CC------------------CGGCGCTCGCGGACCTGCCCATCATGCGCAAGGCCTCCCTGCAGAGGTTCTTCGAGAAGC
GCAAGGACCGCCTCGGCGCGCGCGCGCCCTACGCCCGCCCCGCCGCGCCG---GCAGCCAACAAGGGCTCGGAGGACAA-
-----------GTCGGCGTCGTCCTCCTCGTGGCTCGGGCTGGCCAGCGCCGACGGCGCCTTCGCGCTCTGATCCGGACG
GACGGACGGACGGGGCAAGACGGCTTGCTCGCTCGCCTCAAGACATCGTTTGTAGAGCACTTTCAATTTTAATGTATTCT
TTGGGTAAAAATTCGAATAGCGAAAGAAAGAAAGAAAGAAACAAGATTGAGTTCATAG---CAAGCCCTCTTTGTTCGTT
CGTTTGATTTGATCGACAAATTCTTTTGATTTCTGCGCGGATCATCAGCCATGGTTCGCACA----GAAACCCAGTTCAG
TTCATGAACCGAACAATAACTTGAAATAAAGACGAGTG----CTACCA--------------------------------
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>chr4A_1_TraesCS4A01G007800
CCTTCATACATATTGCCTTTGTTCCTGAATATAAGTATTTTTAGAGGTTTCAATACAAGCTAGATAGGGATGTATATAGA
CATATTTTAAAGTGTAGATTCACTTTATTTTCTCCGTCTCTTTTTGGAATCTCTAAAAGGAATTACATTTAGAAACGGGA
GGGGTAGTTCTAAATCCATTTGCATTCAGCTGCAAGCTCACTGGTTCACGCCCCCCTGG---------------------
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---------GGGCAAAGGAAACTTGGGTTCGTTCGGTTCATGCAACTTGGTCAGAAATTTAAAACATTTTTCAAAAACGA
GAGACAGAAGTAGTAGAGATGAAACTAGAAAGCCCCCCGAGGCGAGGCGGCAGGCGGCAGGCGCACATGAAGCGCGTGCG
AGATAAAACAAGTGGCGGGAGACGGGGCAAAGCCGCGGCCGACAAGAGACACGGCGACAGGGAG----------------
---AGAAAAGAAAAGAAAAGGTC--GCAACTCTCCCACCGAATACGCATCCGTCGCCATCACCCACCCATACCCCCCGG-
-----CCTCAATCTTCACGTGTTCTTCGTGCCCCGCACCACC---------ACCACGTCTCCTTCACTCGCCTAATCTAT
TCACGAAAACAAACCAAGC----G----GCCATGGAGGATGCGACTCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGACTACCTCACATCCCGCCCCCCACAGC
CATCCGTCCACAGAGTCACCACAGCCGCACCGCAGCTCCATCTTCACCACCG-TCATCGTCAACGAGAAGCAGCGGCGAG
CAGCAGCGCCCGGCCAAGAGACGAGACGAGACGAGAGAACAAGTGTTGCCATGGCCGCGATGGAGAGCAAGAGCCGGAGG
TTCGCGCTGGCGTGCGGCGTCCTCAGCCAGTACGTCAAGGCGGAGCAGAAGATGTCCTCCT---CCGCCGTCGTCGCCCC
GCCCCCGCGCGCCCCGCCGGCCACCACGCTCAGCCTCATGCCCGGCGCCGACGTCGGCCAGGACCAC---GCCGCGGCGG
CCGCTGAGGAGGCGGGCC------CGGCCACGCCGCTCACCATCTTCTACGGCGGCAGGGTAGTCGTCTTCGAGGACTTC
CCCGCGGACAAGGCGGCCGAGGTCATGCGCATGGCCACCACCGCCGGCGTCGAGCGCGCGGCCGCCACGCCCGCCCCGGC
CC------------------CGGCGCTCGCGGACCTGCCCATCATGCGCAAGGCCTCCCTGCAGAGGTTCTTCGAGAAGC
GCAAGGACCGCCTCGGCGCGCGCGCGCCCTACGCCCGCCCCGCCGCGCCG---GCAGCCAACAAGGGCTCGGAGGACAA-
-----------GTCGGCGTCGTCCTCCTCGTGGCTCGGGCTGGCCAGCGCCGACGGCGCCTTCGCGCTCTGATCCGGACG
GACGGACGGACGGGGCAAGACGGCTTGCTCGCTCGCCTCAAGACATCGTTTGTAGAGCACTTTCAATTTTAATGTATTCT
TTGGGTAAAAATTCGAATAGCGAAAGAAAGAAAGAAAGAAACAAGATTGAGTTCATAG---CAAGCCCTCTTTGTTCGTT
CGTTTGATTTGATCGACAAATTCTTTTGATTTCTGCGCGGATCATCAGCCATGGTTCGCACA----GAAACCCAGTTCAG
TTCATGAACCGAACAATAACTTGAAATAAAGACGAGTG----CTACCAGCTTCAAACAACGCTTCCTCCATGTCTGGCAT
CACGACCACGACTAGCACAGCTACGATTACCATCTTGAGTACGTATGCCATGATCCCATGAACCGAAATGTCAAGGG---
----------AAGAAACCCATCTCCAGTTCGGCAAGCACGA-GTTCATGGCGGAGGGGAGGGGAAGGGTGGGTGAGAAAC
GGTCAGAAAG-----GGGGGAGCGCAACTTGTCAAAA----GGGGGACGGGGGTTGCGGTGGGAGACTTGGACGTGCGTA
CGCGTCATTGCCCTTTGTTTTTCTC----TTAGAATAACGAAGAAATGGCGCACGTTCATGGCGTTCCGGGGGAACAACC
ATTGCTC------------GGCCCTTCGCTCTCGGCCCTCGCGCGCCCGGACCACGCG----CACACGCGGCGACGGCGA
CGGCGGCGAAGACGACGACGACCCTCGGAAGCCCCGTGGCTCCCTCTCCTCCTCCAACGTGGACGTGTCGGCGCCACCTG
TTGGCC-----------GCCGGCCTCGTGAAAGCGTGTGCTGATCCGACCCGAACGTGACAGCGGAGGAGCGAGTGTGGA
CGGGGCGCGCGGCATCCATGGATGCTCGCCGGAACGGAGTGGTTTACTTTGCGCCCTGCACCCGGGGGCTGGAGGTGCTT
TCCTCGTCGGCGCACGGCGCGCGCGCGTGGCCGGCCGATTCGGTCGGTGATGCGCTCTGTCTGCCCCCCGGCCGGCGCAA
CGTGCTCGGCACGGCGCGTGGGATGGTAACGGGAAGGAAGGAACCGGTTGCTTGCTTGTGCTTGAAAAGCTCCCCTTTTT
CGCCTTTCCGGACGGCGAATCCGCCACGTTTTTAGTTCGTTCGCGCCACGCCGGATCTGATCGAGGGGACTTTGCTGTCC
TGGGCGACTAATCTTTTAGTACTTTTTAATAGGGAATCTAGTGGTGTTGGTGGTGGCGAGCTGGGGCTGTTTGCCCGCTT
TGCTCCCCCCTGGGCTGAGATCGTGTTTAGACTTTATAGACAGACAAACAAAAGCTACTACT
>chr4B_158
GGATGGAGTAGTTT------------------------------------------------------------------
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----------TAAATTCATTTGCATTCAGCTGCAAGCTCACTGGTTCACGGAGCCGGATCCCCTGACGTACGCCCCCCTG
CCGTTGGGCCGCTGACGGGTGGGTCCGGGCCCACACGTCAGTGTGTGGGCCGTACGTCAGACGACCCGCGTCCCTGGTTC
ACGCCCCCCGGGCAAAGGAAACTCGGGTT-G-------------------------------------------------
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------CTCAATCTTCACGTGTTCTTCGTGCCCCGCACCACCTCCACCACCACCACGTCTCCTTCACTCGCCTAATTTAT
TCAA-AAAACAAACCAAGAGGGAGGCCAGCCATGGAGGATGCGACTCTGCGTGCGTGCTTCTCCCTCCCTTCCCTTCCGC
TGAGACCGCCCACCC-CCCTATATAACCGCCCTCCCCTCCCCAAGG----------------------------------
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-------------------------------------------------------TACCTCACATCCCACCCCCCACAGC
CATCCGTTCACAGAGTAACCACAGCCACACCGCAACTTCACCTTCACCATCCATCATCGTCAACGAGAAGCAGC------
----AGCACCCGGCCAAGAGACGAGAC----------AACAAGTGTTGCCATGGCAGCGGTGGAGAGCAAGAGCAGGAGG
TTCGCGCTGGCGTGCGGCGTCCTCAGCCAGTACGTCAAGGCGGAGCAGAAGATGTCCTCCG---TCGCCGTCG-------
--CCCCGCGCGCGCCCCCGGCCACCACGCTCAGCCTCATGCCCGGCGCCGACGTCGGCCAGGAGCACGCGGCCGCGGCGG
CCGCTGAGGAGGCGGGTCCCGCCACGGCCACGCCGCTCACCATCTTCTACGGCGGCAGGGTGGTCGTCTTCGAGGACTTC
CCCGCGGACAAGGCGGCCGAGGTGATGCGCATGGCCGCCGCCGCCGGCGTCGAGCGCGCGGCTGTCGTGCCCGCCCCCGC
CCTCCTCCCGGCGGACAAGACGGCGCTCGCGGACCTGCCCATCATGCGCAAGGCGTCGCTGCAGAGGTTCTTCGAGAAGC
GCAAGGACCGCCTCGGCGCGCGCGCGCCCTACGCCCGCCCGGCGCCGGCCGCCGCGGCCATCAAGGACTCGGAGGAGAAG
TCGGCGTCGGCGTCGGCGTCGTCCTCCTCGTGGCTCGGGCTGGCCAGCACCGACGGCGCCTTCGCCCTCTGATC----TG
CACGGACGGACGGAGCAAGACGGCTTGCCCGCT----TCAAGAGATCGTTTGTAGAGCACTTTTA-----AATGTATTCT
TTGCGTAAAAATTCGAGTAGGGAAAGAAAG----AAGGAAGGAAGATTGAGATCATAG---TAAGCCCTTTTTGTTTGAT
TGA-----TTGGTTGACAAATTCTTTTGATCTCTGCGCGGCTCATCA-TCATGGGTCGCCCA----GAGA-----TTGAG
TTCATGAACCGAATAATAACTTGAAATAAAGACAAGTACGTAGTACTAGCTTGAAACAACAATTCTTCTTTCTCCGGCGT
CACCACTGATACAGTTTCAGTAGTATACTA-------------------------CCATGAACCGAAATGTAAAAAATAA
AAAAAAAATTAAGAAACCAATCCCCGAATTGGCAAGCAGCA-GTTCATGGC-----GGAGGGGAAGGGTGGGTGAGAAAC
GGTCAAAAGGGTT-----GGAGCCCAACTTGTCAAAA----AGGGGATGGGGGTTGTGGTGGGAGACTTGGACGTGCGTA
CGCGTCATTGCCTTTTTTTT---------TTAGAATAAC---GAAATGGAGCACGTTCATGGCGTTCCAGATAAACAACT
GCCCGGTTGTCCGTCCGTTGGCCCTTCGCTCTCGGCTCTGGCGCACCCGGACCACCCACACACACACGCGGCGACGGCGA
CGGCGGCGAAGACGACGACGACCCTCGGAAGCCCCGTGGCTTCCTCCCCTCCTCCAACGTGGT------GGCGCCACCTG
TTGGCCTGTGGTTGGTCGCCGGCCTCGTGAAACCGCGTGACATGGGCAACGGAA-----------------GAGTGTGGA
TGG-----GCGGCATCCATGGATGCTCGTCTCAACGTGCTCCTCTCCCGTGGCTTGCATCT---GGGGCTGGAGGTGCTT
TTCTCATCGGCGCAGGGCGT----GCGTGCCCGGCCGATTCGGTCTGTCCCCCGGGCGTCGC-------------CGCAA
CGTGCTTGGCACGGCGCGTGGGATGGGAACGGGGAGGAAGGAACCGGTTGCTTGTACTTGAATGAAAAGCTCCTTTTTTT
CGCCTTTCCGGACGACGATTCCGCCACGTTTTTAGTTCGTTTGCACCACCACGGATCTGA--------------------
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>chr4D_229
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------------------AAACTTGGGTT-GTTCGGTTCATGCAACTTGGTCACAAACGGAAAATGTTTTT-AAAAACGG
GAGACAGAAGCAGTAGAGATGAAACTAGAAAGCCCTGGACCCCCACCCC-CATGCGGCGGGCGCACATGAAGCGCGTGCG
AGATGAAACAAGTGGCCGGAGACGAGGCAAAGCCGCGGTCGACAAGAGACACGGAGACAGGGAGAGAGATAGAGAGGGGC
AAAAGAAAGGAAAAGAAAAGCGGTGGCAACTCTCCCACCCAATACGCATCCGTCGCCATCATCCACCCGTACCCGCCTCC
CCGGCCCTCAATCTTCACGTGTTCTTCGTGCCCCGCACCACCTCCA------CCACGTCTCCTTCACTCGCCTAATCTAT
TCAA-AAAACAAAGCAAGC----GGCCAGCCATGGAGGATGCGACTCTGCG----TGCTTCTCCCTCCCTTCCCTTCCGC
TGAGACCGCCCACCCGCCCTATATAACCGCCCTCCCCTCCCCAAGG----------------------------------
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-------------------------------------------------------TACCTCGCATCCCACCCCGCACAGC
CATCCGTTCACAGACTCACCACAGCCACACCGCAACTTCATCTTCA-------------TCAACGAGAAGCAGC------
----AGCGCCCGGCGAAGAGACGAGAC----------AAGGAGTGTTGCCATGGCCGCGGTGGAGAGCAAGAGCCGGAGG
TTCGCGCTGGCGTGCGGCGTCCTCAGCCAGTACGTCAAGGCGGAGCAGAAGATGTCCTCCGCCGTCGCCGTCG-------
--CCCCGCGCGCGCCCCCGGCCACCACGCTCAGCCTCATGCCCGGCGCCGACGTCGACCAA---------GCCGCCGCGG
CCGCTGATGAGGCGGGGCCTGCCACGGCCACGCCCCTGACCATCTTCTACGGCGGCAGGGTGGTCGTCTTCGAGGACTTC
CCCGCGGACAAGGCGGCCGAGGTCATGCGCATGGCCGCCACCGCCGGCGTCGAGCGCGCGGCCGTCACCCCGGCCCCGGC
CCAAG---------------CGGCGCTCGCGGACCTGCCCATCATGCGCAAGGCGTCGCTGCAGAGGTTCTTCGAGAAGC
GCAAGGACCGCCTCGGCGCGCGCGCGCCCTACGCCCGGCCCGCCGCGCCG---GCGGCCAACAAGGAGTCGGAGGACAAG
TCGGCGTCGGCGTCGGCGTCGTCCTCCTCGTGGCTCGGGCTGGCCAGCACCGATGGCGCCTTCGCCCTGTGATC----CG
GACGGACGGACGGGGCAAGACGGCTTGCGCGCC----TCAAGAGATCGTTTGTAGAGCACTTTAA-----AATGTATTCT
TTGGATAAAAATTCGAATAGGGAAAGAAA--------GAAACAAGATTGAGTTCATAGTATTAAGCCCTTTTTGTTTGCT
TGT-----TTGTTTGACG-ATTCTTTTGATTTCTGCGCGGATCATCAATCATGGTTCGCTCAGAAGGAGA-----TTCAG
TTCATGAACCGAATAATAACTTGAAATAAAGACAAGTACGCACTACTAGCTTCAAACAACATTTCTTCCTTCTCCGGCGT
CACCATTCGTACAGTTTGAGTAGTAC---A-------------------------CCATGAACCGAAATGTAAAAAA---
AAATAAAAATAAGAAACCAATCCCCAAATTGGCGAGCAGCGGGTTCATGGC-----GGAGGGGAAGGGTGGGTGAGAAAC
GGTCAAAAAGGGAGTGGGGGAGCGCAACTTGTCAAAACAAAAGGGGACGGGGGTTGTGGTGGGAGACTTGGACGTGCGTA
CGCGTCATTGCCTTTTTTTCTTCTTCTTCTTGGAATAAC---GAAATGGAGCACGTTCATGGCGTTCCAGATAAACAACT
GCCC----GTCCGTCCGTTGGCCCTTCGCTCTCGGCTCACATGCGCGACGGC----------------------------
--GCGACGAGGAAGACGACGACCCTCGGAAGCCCCGTGGCTCCCTCTCCCCCTCCAACGTGTT------GCCGCCACCTG
TTGGCC-----------G--------------------------------------------------------------
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>SNPs
SSS-SSSSS-SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS-----S----------------------------------SSS--SSSS---------------------
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-----------------------------S-----------------------S---SSS----SS-----S-------S
----------S------------------------SSSSSSS-S-SS-SS--S-----S---------------------
----S-----------S-------S-------------S---------------S-------------------------
--------S-----------SSS----------------S---------------------S------S-----S--SS-
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---SS--------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S-----------
-------S------------------S-------S--S-----------S-S----------------------SSSSSS
SSSS-----------------------SSSSSSSSSS----------------------S--------------------
------------------------------------------------------------S---S--------SSSSSSS
SS----------S--S-----------------------------------------------S----------------
----------------S--------------------------------------------S------------------
------------------------------------S---------------------------S---------------
------------------------------------------------------S--S----------------------
-------------------------------------------------------S----------S-------------
------------------------------------------------S----------------S--------SSSS--
----------------------------S----SSSS------S-------------------S-SSSSS----------
--------------------S---------SSSS--S------------------------S-------S------S-S-
S--SSSSS---S-S---------------------------------SS----------S--------S-SSSSS-----
-------------S-------------------S---S--------S-------------SS---S---S-S--S---S-
---S--SSSS--SSSSS---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------S--SSS---
------------------S---S---SS-S--------SS-----------SSSSS------------------------
-----S-----------------------------------S--------------S-----------------------
------------S---S-------S--------------SSS-------S------------------S-SSS------S
SSSSSSS-----------------------------S------------------S-S----------------------
--------------------------------------------------------------SSSSSSS-----------
--------------------------------S--S---SSSSSSSS-S-S---SSSSSSSSSSSSSSSSS---------
S--SSSSS--------------------S-SS----SSS-SS-S-S-SS--SSSSSSSSSSSSS----------------
-S---S--------S----SSSSS-----S---------------S--SSSS--SS-SSSSSSSSSSSSSSSSSS-----
------S-------------------S------S--------------------SSSS--SS-----------SS-----
--------------S---S----------------------S--S----SS---------SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_374
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---------------------------------CGGTTCATGCAACTTGGTCAG--------------------------
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>reverse_1655
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------------------------------------------------------CTCCCTGCAGAGGTTCTTCG------
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>forward_1233
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-------------CCAAGAGACGAGACGAGACG-----------------------------------------------
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>reverse_3129
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--------CCTGGGCTGAGATCGTGTTT----------------------------------
