>input_sequence_65500
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---ATGGGGGGCTGGTTCTCTTTCCCGGGTAACGACGGGCGTGCAATCCCAAGAGAGTGGGCAGTTGCAGCTGGATTGGA
TGCCACTCCCTTCAACATGCGTCGACTGAAGAACGTGGGTCGCCCCGGCCCGCGCACACCAGAGTATGCAAATTTTACTT
CT-------------------------TTGCTTTGATTGG----TTGTGTTGAATCAATGAAACGATCCCTGATTTTTCT
------GTTTGATGACAGAGAATTCGACGCCTACCACATTCGCAATCTCGCGCGCTGGGCCCTCCGACATTACAACTCCA
GCCACCCGGTACAATTCCGGCTAGTGTTTCATCCATCTCGATTCTTGCAGCGCATACATGTCCTGTTTTACTTGGTTATG
CTTGTAATAATA--------------TGTGTGTGTGTGTGTCTATGTGTGCAGGGTGCTGAGTTCCGGTGCCCTGATCAG
CCCACCACCGAGGCGAAGGCAGCCTGTGTTGGCTTCAGGGAAGATCTCTGGTACCACCTCAACTTCTTGGCCTGCCTAAA
GGATGACGGCGACGAGCAGAGCTTCTTCGCCGAGCTACGCTATGTCCGGTGTTCCAGCACAATAATCATCGAAACATGCA
CCATCTTAGGTACGCAGATATGTGTGGTAATATTAATGTTCATGTTACACAACCCGGTTGATCCTAGCTGACCCCCCG--
--CCCCCGCGCCT-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------CCCTCTCCAGAAAAACCGTTTT
GCCCCTTTAGAAGCAGTTGCACATTGTGTCCAGATGAATCCAAGATTTTGCATCCAAGCGATGTGGAGCTTGGGTGTGGG
AAGGAGGGCCACCAAGAGGAATTCTTCCGCGAGAGGTGTGGATGGAACGGACATGTAAAGGAATTTTTCAGTCCAAGGGA
GATGCTAGCGATACCCTTCAAGTTAGGAGGACCAGTGCCTCGATATAGACTGGAGTAA----------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------
>chr3D_1_TraesCS3D01G315100
CCCGC---------------CGTGCCGTACCTTAGCGTCGCCGCCGCCGCCGCC------------CCTCAATCTCCTCC
CACCCACCAACTCTGGGGACGCGCGTCGGCGCCGCC---GCCGCCATCGCCGTTCCCCTTCTTCGTCGACTCCCAGAACA
TCGCGCCAGGGCTGTCCTGCTACCGTCTCCCTCCTTTCGAGGTACTCCCATCATCAGTTCCCCTTGTTGTTAAATCAATC
CGTCTCACTAGGAGAAACAATCATCCGATTAGGAGTTCGATTAGGAGTTGCCGATCGATTAGGAAGTACCT--CTCTCTA
TATGTATATCTACAGATCCCATTGGTTAGGCGATCGATCTTGACAACGATAAAAA----TAGCATGCTATTTCGGCGTTT
TAACCTCC--------------------------------------------------------------CTATAGACAA
TTTACTGCAAAATAGAGCTCCTGCCATGGATAATCTACTGTAATATCTCA------CCTTATGGAAGTCTGTTTCCTTCT
CTTGATTGAAGTAGAACATGGTTTGGTGCTTTATGCAAGTTTGTTTCCTTCTCTGCTTTGGAGCATCATGCCATCCGAAC
ATAATACTAGCTAAGGAGGTTTATGCAAGATTGTTTATGCAATATCATTCTAGTAGCTTTTCCTTTAGTTTCCTTCCCTT
TTTGGATGCAAGTTTGTTTCCTTTAGTTT-------------------ATTGCATGGTACAACTACAAATTTTGATGTAG
TTTAACCATTGCAGGTCATGCCCTAGTTTAACCATTGCATGTAATTTAACCATTGAGTGTACGTGCCCTGTTTCCCCTGT
TTTTCCTGTAGTTTAACCAGTGCTTAGAGCAATAGACTGATCTCCTTGTAACTACAAATTTTAGATGTTGAACTCCTTAA
TTTCTGGGATATATTTGTCATATTTTTTTTCACAACGCTATTTTGAATATAGGATGCTATAACCGATATAGCATTTGGAG
AAGGGCCACACTATTTTTTACATTGATCTCGGCACCGACCGACGACGCACAGGAAGGCAGCAGGTGGATCAACCGACTCC
ACCATGGGGGGCTGGTTCTCTTTCCCGGGTAACGACGGGCGTGCAATCCCAAGAGAGTGGGCAGTTGCAGCTGGATTGGA
TGCCACTCCCTTCAACATGCGTCGACTGAAGAACGTGGGTCGCCCCGGCCCGCGCACACCAGAGTATGCAAATTTTACTT
CT-------------------------TTGCTTTGATTGG----TTGTGTTGAATCAATGAAACGATCCCTGATTTTTCT
------GTTTGATGACAGAGAATTCGACGCCTACCACATTCGCAATCTCGCGCGCTGGGCCCTCCGACATTACAACTCCA
GCCACCCGGTACAATTCCGGCTAGTGTTTCATCCATCTCGATTCTTGCAGCGCATACATGTCCTGTTTTACTTGGTTATG
CTTGTAATAATA--------------TGTGTGTGTGTGTGTCTATGTGTGCAGGGTGCTGAGTTCCGGTGCCCTGATCAG
CCCACCACCGAGGCGAAGGCAGCCTGTGTTGGCTTCAGGGAAGATCTCTGGTACCACCTCAACTTCTTGGCCTGCCTAAA
GGATGACGGCGACGAGCAGAGCTTCTTCGCCGAGCTACGCTATGTCCGGTGTTCCAGCACAATAATCATCGAAACATGCA
CCATCTTAGGTACGCAGATATGTGTGGTAATATTAATGTTCATGTTACACAACCCGGTTGATCCTAGCTGACCCCCCG--
--CCCCCGCGCCT-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------CCCTCTCCAGAAAAACCGTTTT
GCCCCTTTAGAAGCAGTTGCACATTGTGTCCAGATGAATCCAAGATTTTGCATCCAAGCGATGTGGAGCTTGGGTGTGGG
AAGGAGGGCCACCAAGAGGAATTCTTCCGCGAGAGGTGTGGATGGAACGGACATGTAAAGGAATTTTTCAGTCCAAGGGA
GATGCTAGCGATACCCTTCAAGTTAGGAGGACCAGTGCCTCGATATAGACTGGAGTAACCATGATTTACTCCTACTTTCA
GTTCAGTTGTAATGTTATA---CTACTTTTAGCCTTGTAAATTTATTATTTCCTATCGTCAATGCATTGGGGGTACAAGC
TTTGTGTTTTCTCTAGAAGAAATGGACCTCCACGAGTGAATCTGTGAGAAATTAAATTTGTGGCAGTTTTGGCACAAAGA
AGTAAGCCTTTCGTTTCACCTCTAGGTTGTTCAATGTAAACAATGCATTCCGTAAAATTATTGACTATACAAGCTTTGCG
CACGTAGAACTTTCTTTTCTTTGTTATTACTGAGACTGTTTGA--GTGTTTGCGTTGCCACGAAATAACACTTTTCATAG
-AAAAAAATATACATCTATTGCAATCACTCGAGTGGTGACAAAAAACGTATGCTCGTTTTTCACCTCATGTGTAAAGATG
TGCTCTCTGGAACGTGCCTTGCCCCAGCTCAATCTCGCCTCCAAACCCAT-------TTTGACATCCTCCTCTTGTCTTA
CAAAACTTCCGTGACCTTGTTAGTGAAGCTGCCATGTCCTCCAACAAAGGTCAGCACTCAGCAATGCATTTGACATGTCA
ACTTATGTGAGGATAATTTAGAAACATAAAGCAACCCGTATTTTGTAGACTGATGACCTTCCAAAGCACCATATCTCCTC
AGCAGATGCATCCATTCATGGCCAGACAAAGCTCCTGTAGTTCTCTAATAGGAAGCTAGCATACTTGAATGGCCTCCGGC
GTCCATTGATCACCCATGGAGAAGAACTGGAGAGCTCAGCTATAGCCAGAGCAGGTGGTAGTACCAATTCCATGCTGCTG
GTACCAATGGCAACTTGATCACTTCAAATTGGAGGGACTATTCAGACCAATTCCCATACTGTAAAA-CCTTTTTTATGAT
ATATCGGAGGTTTTGTGTGAAAAGGCCGTGATCTAAATCATGTGGTCGGTTTGGACAGTGGCATTGCAAATGAGCTATTT
TCGTTTTGTTTACACGAGTGACCTACACCTTC
>chr3B_1
CCCGC---------------CGTGCCGTACCTTAGCGTCGCCGCCGCCGCCGCCGCCGCCGCCGCCCCTCAATCGCCTCC
CACCCACCAACACTGGGGACGCGCGTCGCCGCCGCC---GCCGCCATCGCCGTTCCCCTTCTTCGTCGACTCCCAGGACA
TCGCGCCAGGGCTGTCCTGCTACCGTCTCCCTCCTTTCGAGGTACTCCCATCATCAGTTCCCCTTGTTGTTAAACCAATC
CGTCTCACCAGGAGAAACAATCATCCGATTAGGAGTTCGATTAGGAGTTGCCGATCGATTAGGAAGTACCT--CTCT--A
TATGTATATCTACAGATCCCATTGGTTCGGCGATCGATCTTGACAACGATGAAAA----TAGCATGCTATTTCGGCGTTT
TAACCTCC--------------------------------------------------------------CTATAGACAA
TTTACTGCAAAATAGAGCTCCTGCCATGGATAATCTACTGTAATATCTCA------CCTTATGGAAGTCTGTTTCCTTCT
CTTGATTGAAGTAGAACATGGTTTGGTGCTTTATGCAAGTTTGTTTCCTTCTCTGCTTTGGAGCATCATGCCATCCGAAC
ATAATACTAGCTAAGGAGGTTTATGCAAGATTGTTTATGCAATATCATTCTAGTAGTTTTTCCTTTAGTTTCCTTCCCTT
TTTGGATGCAAGTTTGTTTCCTTTAGTTT-------------------ATTGCATGGTACAACTACAAATTTTGATGTAG
TTTAACCATTGCAGGTCATGCCCTAGTTTAACCATTGCATGTAATTTAACCATTGAGTGTACGTGCCCTGTTTCCCCTGT
TTTTCCTGTAGTTTAACCAGTGCTTAGAGCAATAGACTGATCTCCTTGTAACTACAAATTTTAGATGTTGAACTCCTTAA
TTTCTGGGATATATTTGGCATATTTTTTTTCACAACGCTATTTTGAATATAGGATGCTATAACCGATATAGCATTTGGAG
AAGGGCCACACTATTTTTTACATTGATCTCGGCACCGACCGATGACGCACAGGAAGGCAGCAGGTGGATCAACCGACTCC
ACCATGGGGGCCTGGTTCTCTTTCCCGGGTAACGACGGGCGTGCGATCCCAAGAGAGTGGGCAGTTGCAGCTGGATTGGA
TGCCACTCCCTTCAACATGTGTCGACTGAAGAACGTGGGTCGCCCCGGCCCGCGCACACCAGAGTATGCAAATTTTACTT
CT-------------------------TTGCTTTGATTGG----TTGTGTTGAATCAATGAAACGGTCCCTGATTTTTCT
------GTTTGATGACAGAGAATTCGACGCCTACCACATTCGCAATCTCGCGCGCTGGGCCCTCCAACATTACAACTCCA
GCCACCTGGTACAATTCCGGCTAGTGTTTCATCCATCTCGATTCTTGCAGCGCATACATGTCCTGTTTTACTTGGTTATG
CTTGTAATAATA----------------TGTGTGTGTGTGTCTATGTGTGCAGGGTGCTGAGTTCCGGTGCCCTGATCAG
CCCACCACCGAGGCGAAGGCAGCCTGTGTTGGCTTCAGGGAAGATCTCTGGTACCACCTCAACTTCTTGGCCTGCCTAAA
GGATGGCGGCGACGAGCAGAGCTTCTTCGCCGAGCTACGCTATGTCCGGTGTTCCAGCACAATAATCATCGAAACATGCA
CCATCTTAGGTACGCAGATATGTGTGGTTCTATTAATGTTCATGTTACACAACCCAGTTGATCCTAGCTGACCCCCCG--
--CCCCCGCGCCT-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------CCCTCTCCAGAAAAACCGTTTT
GCCCCTTTAGAAGCAGTTGCACATTGTGTCCAGATGAATCCAAGATTTTGCATCCAAGCGATGTGGAGCTTGGGTGTGGG
AAGGAGGGCCACCAAGAGGAATTCTTCCGCGAGAGGTGTGGATGGAACGGACATGTAAAGGAATTTTTCAGTCCAAGGGA
GATGCTAGCGATACCCTCCAAGTTAGGAGGACCAGTGCCTCGATATAGACTGGAGTAACCATGATTTACTCCTACTTTCA
GTTCAGTTGTAATGTTATA---CTACTTTTAGCCTTGTAAATTTATTATTTCCTATCGTCAATGCATTGGGGGTACAAGC
TTTGTGTTTTCTCTAGAAGAAATGGATCTCCACGAGTGAATCTGTGAGAAATTAAATTTGTGGCAGTTTTGGCACAAAGA
AGTAAGCCTTTCGTTTCACCTCTAGGTTGTTCAATGTAAACAATGCATTCCGTAAAATTATGGACTATACAAGCTTTGCG
CACGTAGAACTTTCTTTTCTTTGTTATTACTGAGACTGTTTGA--GTGTTTGCGTTGCCACGAAATAACACTTTTCATAG
-AAAA-AATATACATCTATTGCAATCACTCGAGTGGTGACAAAAAACGTATGCTCGTTTTTCACCTCATGTGTAAAGATG
TGCTCTCTGGAACGTGCCTTGCCCCAGCTCAATCTCGCCTCCAAACCCAT-------TGTGACATTCTCCTCATGTCTTA
CAAAACTTCCGTGACCTTGTTAGTGAAGCTGCCATGTCCTCCAACAAAGGTCAGCACTCAGCAATGCATTTGACATGTCA
ACTTATGTGAGGATAATTTAGAAACATAAAACAACCCGTATTTTGTAGACTGATGACCT---------------------
----------TCCATTCATGGCCAGACAAAGCTCCTGCAGTTCTCTAATAGGAAGCTAGTATACTTGAATGGCCTCCGGC
GTCCATTGATCACCCATGGAGAAGAACTGGAGAGCTCAGCTATAGCCAGAGCAGGTGGTAGTACCAATTACATGCTGCTG
GTACCAATGGCAACTTGACCACTTCAAATTGGAGGGACTATTCAGACCAATTCCCATACTGTAAAG-CCTTTTTTATGAT
ATATCAGAGGTTTTGTGTGAAAAGGCCGTGATCTAAATCATGTGGTCGGTTTGGACAGTGGCATTGCAAATGAGCTAT--
--------------------------------
>chr2A_1
CCCGC---------------CGTGCCATACCTCAGCGTCGTCGCCACCGCCGCCGCCT--------CCTCAACCGCCTCC
TACCCACCAACACTGGGGACGCGCGTCACCGCCGCC---GCCGCCATAGCCGTTCCCCTTCTTCGTCGACTCCCAGGACA
TCGCGCTAGGGCTATCCTGCTACCGTCTCCCTCCTTTCGAGGTACTCCCATCATCAGTTCGCCTTGTTGTTAAATCAATC
CGTCTCACTAGAAGAAACAAGTCTC------------CGATTAGGAGTTGCCGATCGAT--------------CTCT--A
TATGTATATCTACAGATCCCATTGGTTCGGCGATCGATCTCGACCAACTAAAAAAATACTAGCATGCTATTTCGGCGTTT
TTAACCTCGCTATAGCGTATCTGAGAGTGCCATTTTAGCCATTTTATTACTTGCTATTACGCTAATCGTGCTATGGATAA
TCTACTGCAAAATAGAGCTTCTGACATGGATAATCGACTGTAATATCTCAGATTTTCCTTATGCAAGTCTGTTTCCTTCT
ATTGATTGAAGTAGCACATGGTTTGGTGCTTTATGCATGTTTGTTTCCTTCTCTGCTTTGGAGCATCATGCCATCCGAAC
ATAATACTAGCTAAGGAGGTTTATGCAAGTTTGTTTATGCAATATCATTCGAGCAGCTTTTCCTTTAGTTTCCTTCCCTT
TTTGGAAGCAAGTTAGTTCCCTTCCCTGTTAATTCCTGTAGTTTCACCATTGCATGATACAACTACAAATTTTGATGTAG
TTTAACCATTGCACGTCATGCCCTAGTTTAACCATTGCCTGTACA------------------TGCCCTGTTT-CCCTGT
TTTTCCTGTAGTTTAAGCAGGGCTTAGAGCAATAATCTGATCTCCTTGTAACTACAAATTTTAGATGTTGAACTCCTTAA
-TTCTGGGATATATTTGGCATATTTTTTT-CACAATGCTATTTTGAATATAGCACGCTATAACCTATATAGCATTTGGAG
AAGGGCCACGCTATTTTTTACATTGATCTCAGCACCGATCAACGACGCACATGAAGGCAGCAGGTGAATCGACCGACTCC
ACCATGGGAGCTTGGTTCTCTTTCCCTGGTAACGACGGGCGTGCGATCCCAAGAGAGTGGCTGGTTGCAGCTGGATTGGA
TGCCACTCCCTTTGATATGTGTCGACTCAAGAATGTGGGTCGCCCTAGCCCGCGCACACCAGAGTATGCAAATTTTACTT
ACTTGTTTGCTTCA---------------------ATTGG----TTGTGTTGAATCAATGAAACAATCCCTGATTTTTCT
------GTTTGATGACAGAGAATTCGACGCCTACCACATTCGCCATCTCGCGCGCTGGGCCCTCCGACATTACAACTTCA
GCCACCCGGTACAATTCCGGCTAGTGTTTCATCCATCTCGATTCTTGCAGCGCATATATGTCCTGTTTTACTTGGTTATG
CTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAGGGTGCTCAGTTCCAGTGCTCTGATCAG
CCCACCACCGAGGCGAAGGCAGTCTGTGTTGGCTTCAGGGAAGATCTCTGGTACCACCTCAATTTCTGGGCCTGCCTAAA
GGACGATAGCGACGAGCAGAGCTTCTTCGCCGAGCTACACTATGACCGGTGTTCCAGCACAATAATCATCGAAACGTGCA
CCATCTTAGGTACGCAGATATGTGTGGTTCTATTAATGTTCATGTTACACAACTCGGTTGATCCTAGCTGATCACACCCC
AACCCCCTCCCCT-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------CCCTCTCCAGAAAAACCGTTTT
GCCGCTCTAGAAGCGGTTGCACATTGTGTCCAGATGAATCCAAGATTTTGCATCCAAGCGATGTGGAGCTTGGGTGTGGG
AAGGAGGGCCACCAAGAGGAATTCTTCCGCGAGAGGTTTGGATGGAACGGACATGTAAAGGAATTTTTCAATCCGAGGGA
GATGCTAGCGATACCCTTCAAGTTAGGAGGACCAGTGCCTCGATATAGACTGGAGTAACCATGATTTACTCCTACTTTCA
GTTTAGTTGTAATGTTCTA---CTACTTTTAGGCTTGTAAATTTATTATTTCCTATCGTCAATGCATTGTGGGTACAAGC
TTTGTGTTTTCTCTAGAACAAATGGACCTCCACGAATGAATCTGTGAGAAATTAAATTTGTGGCAGTTTTGGCACAAAGA
AGTTAGCCTTTCGTTTCACCTCTAGGCTGTTCAATGCAAACAATGCATTCCGTAAAATTATTGACCAGACAAGCTTTGCG
CACGTAGAACTTCCTTTTTTTTGTTATTATTGAGACTGTTTCA--GTGTCTGCGCTGCCACGAAATAACACTTTTCATT-
-AAAAAAATATACATATATTGCAATCACTCGAGTGGTGACAAAACACGTATGCTCGTTTTTCACCTCATGTGTAAAGATG
TGCTCTCTGGACCGTGCCTTGCCCCAGCTCAATCTCTCCTCCAAACCCAT-------TTTGACATTCTCCTCTTGTCTTA
CAAAACTTCGGTGACCATGTTAGTGAATCTGCCATGTCCTCCAACAAAGGTCGGCACTCAGTAATGCCTTTGACACGTCA
ACTTATGTGAGGATAATTACGAAACATAAAACAACCCA---TTTGTAGAGTGATGACCTTCCAAAGCACCATATCTCCTC
AGCAGATGCATCCATTCATGGCCAGACAAAGCTCCTATAGTTCTCTAATAGGAAGCTAGTATAATTGAATGGCCTCCGGT
GTCCATTGATCACCAATGGAGAAGAACTAGAGAGCTCAGCTAGAGCCAGAGCAGGTGGTAGTACCAATTCCATACTGCTG
GTACCAATGGCAACTTGATCACTTCAAATTGGAGGGACTATTCAGACAAATTCCCATACTGTAAAACCATTATTTATGAT
ATGTCGAAGGTTCGTT-TGAAAAGGCCGTGATCTAAATCATGTGGTCGGTTTGGACCGTGGCATTGCAAATGAGCTAT--
--------------------------------
>chr2D_1
CCCGCCGTGCCGTGCCGTGCCGTGCCGTACCTCAGCGCCGCCGCCC--------------------------CCGCCTCC
CACCCACCAACACTGGGGACACGCGTCGCCGCCGCC---GCCGCCATCGCCGTTCCCCTTCTTCGTCGAGTCCCAGCACA
TCGCGCCAGGGCTATCCTGCTACCGTCTCCCTCCTTTCGAGGTACTCCCAGCATCAGTTCCCC---TTGTTAAATCAATC
CGTCTCACTAGGAGAAACAAGT-TCCGATTAGTAGTTCGATTAGGAGTTGCCGATCGATTAGGAAGTACCTCTCTCT--A
TATGTATATCTACAGATCCAATTGGTTCGGCGATCGATCTCGACCAACTAAAAAAATACTAGCATGCTATTTCGGCGTTT
TTAACCTCCCTATAGCGTATCTGAGAGTGCCATTTTAGCCATTTTATTACTCGCTATGACGCTAATCGCGTTATGGATAA
TCTACTGCAAAATAGAGCTCCTGCCATGGATAATCTACTGTAATATCTCAGATTTTCCTTATGCAAGTCTCTTTCCTTCT
CTTGATTGAAGTAGAACATGGTTTGGTGCTTTATGCATGTTTGTTTCCTTCTCTGCTTTGGAGCATCATGCCATCCGAAC
ATAATACTAGCTAAGGAGGTTTATGCA----------------------------GCTTTTCCTGTAGTTTCCTTCCCTT
TTTGGATGCATGTTTGTTTCCTTCCCAGTTAATTCCTGTAGTTTGACCATTGCATAATACAACTACAAATTTTGATGTAG
TTTAACCATTGCACGTCATGCCCTAGTTTAACCATTGCCTGTACA------------------TGCCCTGTTT-CCCTGT
TTTTCCTGTAGTTTAACCAGGGCTTAGAGCAATAATCTGATCTCCTTGTAACTACAAATTTTAGATGTTGAACTTCTTAA
TTTCTGGGATATATTTGGCATATTTTTTT-CACAACGCTATTTTGAATATAGCACGCTATAACCTGTATAGCATTTGGAG
AAGGGCCACGCTGTTTTTTACATTGATCTCAGCACCGATCAACGACGCACAGGAAGGCAGCAGGTGTATCGACCGACTCC
ACCATGGGAGCCTGGTTCTCTTTCCCTGGTAACGACGGGCGTGCGATCCCAGGAGAGTGGCTGGTTGCAGCTGGATTGGA
TGCCACTCCCTTTGATATGCGTTGACTCAAGAACGTGGGTCGCCC-----------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------A
GCCACCCGGTACAATTCCGTGG----------------------------------------------------------
---------------------GTGTGTGTGTGTGTGTGTGTGTGTGTGTG------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------TGTTCAATGCAAACAATGCATTCTG------------CCAGACAAGCTTTGCG
CACGTAGAACTTT-----------------------------A--GTGTCTGCGTTGCCACGAAATAACACTTTTCATA-
-AAAAATATATACATCTATTGCAATCACTCGAGTGGTGACGAAACACGTATGCTCGTTTTTCACACA-------------
-----TCTGGAACGTGCCTTGCCCCAGCTCAATCTCTCCTCCAAATCCATTTTGACATTTGACATTCTCCTCTTGTCTTA
CAAAACTTCGGTGACCTTGTTAGTGAATCTGCCAT---CTCCAACAAAGTTCAGCACTCAGCAATGCCTTTGACA-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------
>chr3A_3
--CGC---------------CGTGCCGTATCTCAGCGTCGCCGCCGCC------------------CCTCAATCGCCTCC
CACCCACCAACTCTGGGGACGCGCGTCGCCGCCGCCGCTGCCGCCATCGCCGTTCCCCTTCTTCGTCGACTCCCAGGACA
TCGCGCCG------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------TTCCCCTTGTTGATGCATTGGGGGTACAAGC
TTTGTGTTTTCTCTAGAAGAAATGGACCTGCACGAGCGAATCTGTGAGAAATTAAATTTGTGGCAGTTTTGGCACAAAGA
AGTAAGCCTTTCGTTTCACCTCTAGGTTGTTCAATGTAAACAATGCATTCCGTAAAATTATTGACTAGACAAGCTTTGAG
CACGTAGAACTTTCTTTTCTTTGTTATTACTGAGACTGTTTGA--GTATTTGCGTTGCCACGAAATAACACTTTTCATAG
AAAAAAAATATACATCTATTGCAATCACTCGAGTGGTGACAAAACACGTATGCTCATTTTTCACCTCATGTGTAAAGATG
TGCTCTCTGGAACGTGCCTCGCCCCGGCTCAATCTCTCCTCCAAACCCAT-------TTTGACATCCTCCTCTTGTCTTA
CAAAACTTCGGTGACCTTGTTAGTAAAGCTGCCATGTCCTCCAACAAAGGTCAGCACTCAGCAATGCCTTTGACATGTCA
ACTTATGTGAGGATAATTAAGAAACATAAAACAACCTGTATTTTGTAGACTGATGACCTTCCAAAGCACCATATCTCCTC
AGCAGATGCATCCATTCATGGCCAGACAAAGCTCCTATAGTTCTCTAATAGGAAGCTAGTATACTTGAATGGCATCCGGC
GTCCATTGATCACCCATGGAGAAGAACTGGAGAGCTCGGCTATAGCCAGAGCAGGTGGTAGTACCAATTCCATGCTGCTG
GTACCAATGGCAACTTGATCACTTCAAATTGGAGGGACTATTCAGACAAATCCCTATACTGTAAAATCCTTTTTTATGAT
ATATGGGAGGTTTCGTGTGAAAATGCCGTGATCTAAATCATGTGGCCGGTTTGGAGAGT---------------------
--------------------------------
>chr2D_966
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------ACACGAAAGTAGCAGGAGGATCGATCGAATCC
ATT---GGAGCCTGATTCTCTTACCCTGGTAACGACGCGCGTGCGATCCCAAGAGAGTGGGTGGTTGCAGCTGGATTGGA
TGCCACTCCCTTTGATGTGCATCGACTAAAAAACATGGGTCACCCCGGCCCGCGCACACCAGAGTATGTCAATTTTACTT
ACTTGTTTGCTCTTACTTCAAGAGAGATTGTATTGATTGTGTAATTGTCTTGAATCAACGAAACGATCCCTGATTTTTCT
TTGTTTGTTTGACGACAGAGAATCCGATGCCTACCACATTGCCAATCTCGCACACTGTGCCCTCCGACATTACAACACCA
ACCACCCGGTACATCACCGGCCAGTGTTTCATCCATCTCAGTTCTTGCA-----TACATTCCCTGTTTTACTTGGTTATG
CTTGTAATAATA----------------TGTAGA----TGTGTGTGTGTGCAGGGTGCTGAGTTTAGGTCTCCTGATCAG
CCCACCAC----------------------GGCTTCAGGGAAGATCTCTGGTACCACCTCAACTTCTCGGCATGCACGAC
AAACGATGACGACGAGCAGAGCTTCTTCGCTGAGCTACGCTATGACCGGTGCTCCAGCACAATAATCATCGAAACATGCA
CCATCTTAGGTACGCAGACATATGTGGATCCATTAATGTTCATGTTACACGACTCANNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCCCTCTCCAGAAAAACCATTTT
GCTGCTTTAGAAGCAGTTGCACATTGTGTCCAGATGAATCCAAGATTTTGCATCCAAGCGATGTGGAGCTTGGGTGTGGG
AAGGAGGGCCACCAAGAGGAATTCTTCCGCAAGAGGTGTGGATGGAAAGGTCGTGTAAAGGAATTTTTCAGTCCGAGGGA
GATGCTAGCGATACCCTTCAAGTTAGGAGGACCAATGCCTTGATATAGACTGGAGTAACTATGATTTACTCCTGCTTACA
GTTCAGTTGCAATGTTCTACTCCTACTTTTAGGCTTGTAAATTTATTATTTCCTATCATTGATGCATT-GGGGTACAAGC
TTTGTGTTTTCTCTAGAGGGAATGGACGTCCACTAGTAAATCTGTGAGAAAGTAAATTTGTGGCAGTTTTGGCACAGAGA
AGTAAGCCCTTCGTTTCACCTCTAGGCTGTTCAAAGTAAACAATGCATTCCGTAAAATTATTGACTAGACAAGCTTTGCG
CACGTTGAACTTCTTTTTCTTTGTTATTACTGAGACTGGTTGAGTGTTTGTGCGTTGGCACGAAATAACACTTTTCATAG
AAAA----TATACATCTATTACAATTACTCGAGTGGTGAAG--ACACATATGCTCG-TTTTCACCTCATGTGTAAAGATG
TGCTCTCTGGAACGTGTCTTGCCCCAGCTCAATCTCTCCTCCAACCCCAT-------TT-GACGTTCTCCTCGTCTCCTG
CGAAACTTCGATAACCTTGTTAGTGAATCTACCATCTCCTCCAACAAAAG-------TCAGCAATGCCTTTGACACGTCA
ACTTATATGAGGATAATGAATAAACATAAAT-AACCCATATTTTTTAGACCGAGGACCTTCCAAAGCACC----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------
>SNPs
--------------------------------------------------------------------------S-----
----------------------------S-----------------------------------------------S---
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------SS-
---------------------------S----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------S--------------------------------------------------------------
--------------------------------------------------------------------------------
----------S---------------------------------S-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------SS--------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------S-------------------------------------------------
-----------------------------------------------------------S--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------SS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_157
--------------------------------------------------------------------------------
---------------------------------------------------------CTTCTTCGTCGACTCCCAGA---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------
>reverse_1131
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------GCTGGTTCTCTTTCCCGGG---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------
>forward_348
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--TGTATATCTACAGATCCCATTGGTTA----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------
>reverse_3071
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------GCAACCCGTATTTTGTAGACTGA---------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------
