>input_sequence_65489
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-------------------------------------------------------------------A---TTACCGCAA
GGAACTCCAAATTTCCGA------TCATCATATCT--------AAACACGAGAAGCCGAGCGCCTGGGGACGAAAACCAT
GACTATTCTCTCCAAGGATGCACCTGCGGAGATCTCCCACCCCGCCCACCCGGAGCACAAGCTGAAGCTGACGGCCGCCG
GCGCGGCGGAGTTCCAGTGCGACGTCTGCAAGGAGCTAGGCGCCGGGGACCGGTACACGTGCCGGCCCTGTGACTTCGAC
CTCCACAGCGACTGCGCCCTCGCAGAGGCCACGCTGGCGCACCCATTGCTCAAGGGCAGAGAGCTCCAGCTCCGCT----
-----------ACGGCGACGACGGCGGCAGGACATGTGGCGCCTGCGGCGGGAAGGTACTCGGGCTGCACTACCACTGCG
CCGCCAAGAAGGGCATGGACCTCCACCCGTGCTGCGCGGCGCTGCCGCTGGCGATCCCCCAGGAGGAGCTCACGCTCGAG
CTCCGGAAGGAGGCGTCTCACCGGTGCAGCAGCTGCCGGGAGAGAGGCAGGGGCAGGACCTGGTTCTACCGCTCCACCTG
CAAGACCGTGTACCTGCACGTCGCCTGCGTCAGAGAGATCGCTCGCCGGAGCCGTGCCGCCGGCGACGGCTCGAGCACCG
ATCCGTTCGCTTCCGTCAAGGATGCGGCGCTGCAGATCTACCGCGCAAAGAGGGACGAGAGTGAGTTGGAGCGCGTCATT
CTCGAGCTGGTTCTTGGAGGTTGATGCCGCAAAGCTTTTCTCCCAAAGGAAGATTTGCAGGTTGATTACA----------
--CAATTTGCTAATGAGCCAACGGGACTATTCCGTAGTATGTACTGCCTAAACCGCGTGTGTATTTTATGGACTTTTACG
ATTATTTCACAGGTCTTAGATTTTCTTTCTTCCATGTAAGAAGAACATTGTCACGTACGTGTA-AATATA----------
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>chr7A_1_TraesCS7A01G368100
AGAACATGGTGATAAATTAACTTCTTCAGACTGACAGTTAGAACTGCGTTTACCTTTTTTT-CCAGCTAGGAACGCGCTT
ACTTGGACAGATAGATATCCCCTTCATTTATTTATTCGGGATCAGCTCATCACCAACACTAGTAGCTATTCAAATCCAGA
CCTAGAAATTAGGAAAGTGGACGAGTCAAATATGACATGCCTGGTTCAGGTTCAACTGTATAATCTTTATAAGCTTGTTA
GACCAGCTAGAAACTTCT---ACATCCAACAATTATGAATAAGATTAAGAACACTAACGACTTTTGAGACAGAGACACAT
ACATTTGG-CCGGTGTGCTTACTTAGCTAC--------------------------------------------------
---AAATCTCTAATAATCAGCACTACAGATGTAGTACCAGATAATCGGTAGCAAAAGCCCCGTGAAGAGCTACAAAAGTC
CATAGACCGCCTAATTGACACCAACGACTAAAATCTCCTTGTGCTTCGGGCCCCCATAGTAGCAACAAAGAGTGTGCTAA
ACTATTGGCAGGGGTAGAAACTGTTGCGGTTAAGAAATTACAACCTTCCAAATAGAAACTAGCCAATCCATGGGTATACC
AAGAAGTTATAAAAGTTGTCTCTGTAAACCAACCCCCTAAAGCGAAATAAGCACAAGGAAAGAGCAATAGGCCAGACCAT
CCTATCCACAACTACCATTTGGGCGAGTCAAAGTTGACATATATATGCATGGTTCAGGTTCAACTATATGTTGTTTTGCT
TGTTAGACCAGC---TAAAACAGATAAAACATGATGATAAAACATGATTAACTTCTTCAGGCAGACTGTTAAGAGCGCGC
TTACTTT-------------------------------------------------------------------------
---------------------------------------------------------------------------TCATT
TCCCGGTAGGAACACGCTTACTAGGATAGATACA----------------------------------------------
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---------------------------------------------------TACACTGTCTTCATGTTCTA----ATATT
CATATTTTTGTTTCCACAAAGACTTAGACACATACACTTGTCTAT-----------------------------------
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--ACTCTTGGTTCGGCGTGCTTACTTGGCTATAAATAACTTCTCTCTGTTTTAACATCTCCTGTTTCA---TTACCGCAA
GGAACTCCAAATTTCCGA------TCATCATATCT--------AAACACGAGAAGCCGAGCGCCTGGGGACGAAAACCAT
GACTATTCTCTCCAAGGATGCACCTGCGGAGATCTCCCACCCCGCCCACCCGGAGCACAAGCTGAAGCTGACGGCCGCCG
GCGCGGCGGAGTTCCAGTGCGACGTCTGCAAGGAGCTAGGCGCCGGGGACCGGTACACGTGCCGGCCCTGTGACTTCGAC
CTCCACAGCGACTGCGCCCTCGCAGAGGCCACGCTGGCGCACCCATTGCTCAAGGGCAGAGAGCTCCAGCTCCGCT----
-----------ACGGCGACGACGGCGGCAGGACATGTGGCGCCTGCGGCGGGAAGGTACTCGGGCTGCACTACCACTGCG
CCGCCAAGAAGGGCATGGACCTCCACCCGTGCTGCGCGGCGCTGCCGCTGGCGATCCCCCAGGAGGAGCTCACGCTCGAG
CTCCGGAAGGAGGCGTCTCACCGGTGCAGCAGCTGCCGGGAGAGAGGCAGGGGCAGGACCTGGTTCTACCGCTCCACCTG
CAAGACCGTGTACCTGCACGTCGCCTGCGTCAGAGAGATCGCTCGCCGGAGCCGTGCCGCCGGCGACGGCTCGAGCACCG
ATCCGTTCGCTTCCGTCAAGGATGCGGCGCTGCAGATCTACCGCGCAAAGAGGGACGAGAGTGAGTTGGAGCGCGTCATT
CTCGAGCTGGTTCTTGGAGGTTGATGCCGCAAAGCTTTTCTCCCAAAGGAAGATTTGCAGGTTGATTACA----------
--CAATTTGCTAATGAGCCAACGGGACTATTCCGTAGTATGTACTGCCTAAACCGCGTGTGTATTTTATGGACTTTTACG
ATTATTTCACAGGTCTTAGATTTTCTTTCTTCCATGTAAGAAGAACATTGTCACGTACGTGTA-AATATATAGCAAAAAG
TCTATGGTATAGAGTTCCAAGAGATGCGTATTGCCGATGTACATTGACTAT--TCGCTGCTACGTTGAGACTCTGGGGCC
TGCCTGAGCAGAAAAATTTGAAGATCACTAGACCACTAGACCAACGTAC--------------AACATAAAGCGGGGATA
GCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGCACAATATTCTTTTTTTA
CCTCCGTAATCTCGGTATTGTTGAAGACAAAGGTGGTTTACATCACAAGTTGTCAAAGTAAATATCACTTGTTTCGATCC
GTGCTCACATGTTGCTTCTGCTAACAATGATTCTTCCACTTTAATCTCCTATGCTCAAATATCATGTTGCACATGTATTC
AAATATTTGCAAACACTTCAATCTCTAAAAAAGAGAGTGCTACAGTTTTGTGCGAGTCCTTTTGTAACATATCCNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCAATGGTGTGGTTCTCTCAGCTGCGGGATCTGTGCCCTCCAA
TGGAGGGTTTGATATTCATAAGATATCCATGCAGTTTTCCAATATCGACATGCCAGACTACTAGAAAATCGCTAACAAGC
TTGCGATGCACGGCACCCCATCCATAGGACAACTCCCCTCCCAGATGACAGACACCGCAAGAATCCTCAATTTCCACAAG
CACACACGTTAAGAGACCCGCTTCGGTACACCCCCCTCACGGAGCT
>chr7B_1
AGAACATGATGATAAATTAACTTCTTCAGACTGACAGTTAGGTACGCGTTTACTTTCTTTTCCCAGTAAGAAACGCGCTT
ACTTGGACAGATATAAATCCCCTTCATTTATTTATTCGAAATCAGCTCAACACCAACACCAGTAACTATTTAAATCCAGA
CGTAGCAATTAGGAAAGTGGACGAGTCAAATATGACATGTCTGGTTCAGGTTCAACTGTATAATCTT--TAAGCTTGTTA
GACCAGCTAGAA-CTTCT---ACATCTAACAAATTTGAATAA------GAACATTAAAGACTATTGAGACAGAGACACAT
AGATTTGGTCCGGTGTGCTTACTTAGCTATGAATAACTTCTCTGCTGTTTCATTTTGCATTGGTGTTAACCGCAAGGAAC
TCTAAATCTCTAATAATCAGCACTATAGATGTAT--CCAGATAACCGGTAGC----------------------------
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--TATCCACAACTAGCGTTTGGGTGAGTCATAACTGACATATGCC----TGGTTCAGGTTCAACTATATGTCGTCATGCT
TGTTAGACCAACTAATAAAACAGAAAAAACATGATGATAAA------TTAGCTTCTTCATACAGACTGTTAAGAGTAAGC
TTACTTTTCTTTTGGGCCCCCTTAGCCAGCGAACGTTCGCCAGGAGGGGTTTATGTGTGGCGTGGCATTTTCTTCAGAGG
AACATGGCATTTTCTGGCAAAAAGTACGAAATGCCACTCTCCCCCAGCGAACGTCAGCCAGATAAGATTTCCGCTTCTTT
TCTGGGGAGGAACACGATTAGTAGGATAGAT-------------------------------------------------
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---------------------------------------------------------------------TTATTTATTCG
AAATCAGCTCAACGTAATAACCAGTAGCTATTCAAATCCAGACTTGGCACATCACACACAA-AAAAATCCTAGCAATTAG
GAATGAGAACGGGTCAAATATGGCATGCCTGGTTCAGGTTAAAGAGACACGTACACGGTTTTTATGTTTAGTAGTAATAT
TCATA-TTTGTTTCCACAAAGACAGAGACATATACACTTGTCTAT-----------------------------------
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--ACTCTTGGTCCGGCGTGCTAACTTAGCTATAAATAACCTCTCTCCTGTTTCATTTTGCACTGCAGTTATTAACCGCAA
GGAACCCCAAATCTCCAA------CCATCATATCTGAAGTTCTCAACACCATAAGCCGAGCGCCCGGGGAC-AAAACCAT
GACTATCCTCTCCAAGGATGCTCCTGCGGAGATCTCCCACCCCGCCCACCCCGAGCACAAGCTGAAGCTGATGGCCACCG
GCGCCGCGGAGTTCCAGTGCAACGTCTGCAAGGAGCTAGGCGCCGGGGACCGGTACACATGCCGACCCTGTGACTTCGAC
CTCCACAGCGACTGCGCCCTGGCAGAGGCCACGCTGGTGCACCCATTGCTCAAGGGCAGAGAGTTCCAGCTCCGCCTCGA
GCACCCGCGCCACAGCGACGCCGGCGGCAGGACATGCGGCGCCTGCGGCGGGAAGGTGCTCGGGCTGCACTACCACTGCG
CCGCCAAGAAGGGCATGGACCTCCACCCGTGCTGCGCGGCACTGCTGCTGGTGATCCCTCAGGAGGAGCTCACGCTGGAG
CTTCGGAAGGAGGCGTCTCACCGGTGCAGCAGCTGCCGGGAAAGAGGCAGGAGCAGGGCCTGGTTCTACCGTTCCACCTG
CAAGACCGTGTACCTGCACGTCGCCTGCGTCAAAGAGATTGCTCGCCGGAACCGTGGCGCCGGCGCCGGCGAGAGCACTG
ATCCATTCGCTTCCGTTAAGGAAGCGGCGCTGCAGATCTACCGCGCAAAG---GACGAGAGCGAGTTGGAGCGCGTCATT
CTCGAGCTGGTTCTCGGAGGTTGATGCTGCAAAGCTTTTCTCCCAGAAGAAAATTTGCAGGTTAATTAAATAATTTGGTG
CTCAATTTGGTAATGAGCGAACGGGACTATTCCATAGTTTGTAGTACTTATTACTACTGTTTCGTCATAGAGAT------
-----------------------------TTCCATGTA--AAAAACATTGTCATGTACGTAAGTATTATATAGCGAGAAG
TCTATGCTACG--GTTTCAAGGGATGTGTAATACTGATCTTCATTGAATGTGATCGCTGCTACGTTGAGATTCTCGGGCT
TGCAGGAGGAACAAAATTTAAAGAGCGTGGGTATCTGTATAAATAAGTTAATTTCACACAGAAAACATCAAGCGGGGATA
GCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCACGCTCACCGCATAC------TTTTTTA
TCTCCTTAATCTCGTTATT-------------------------------------------------------------
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>chr7D_27
--------------------------CAGATTGACAGATAGGAACGCGTTTACCCTCTTTTCCCAGTTAGAAACGCGCTT
ACTTGGACAGATAGAAATCCC----ATTTATTTATTCGAAATCAGCTTATCACCAACACCAGTAGCAGTTCAAATCCAGA
CGTAGCAATGAGGAAAGTGGACGAGTCAAATATGACATGCCTGGTTCAGGTTCAACTGTATAATCTT--TAAGCTTGTTA
GACCAGCTAAAA-CTTCTGGTACATCTAACAAATAA-AATAA------GAACATTGTACATAC-----------------
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-----------------------------------------------------------------ATATGTCGTCTTGCT
TGTTAGACCAACTAATAAAACAGAT-AAACATGATGATAAA------TTAACTTCTTAAGACAGACAGTTAAGAGCGCGT
TTACTTTTCTATGCTGCAGAGGCCAGGAGTGATCTCCTTCTTTTCTAAAAAAAAGAGCGTGTTTAC-TTTTCTTCA----
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--CCGGTAGGAACACGCTTAATAGGATAGATACAAATTCTCTTTGTTTATTTATCGAAAAGTCTAACGCCCACACGTGTG
AGCGTTTGCATCTTGCCCACACGCGTGGATCCGTGTCTGTTTACGAGCGCACGAATCTTGACATGTTTCTAATGCCACGT
AGGACTGGGCTGGTGTGTGAGCATTCACTCGGTCGCCCACACAGCCGTTTCACCACACGGGAGGGGCTGGTATGTGGGCG
TTCAGCAGTTCGCCCAGACGCCACTTTCCACTCACGCACAAGGGCTGGTGTGTGGGTATTTGCCATCTCGCCCACACGCC
CGTCTCATCTCCCACACCCAAGTTGCCACTTGCCATGTGTTTTGCAGTGTACATGGCAACTGCCGTAGTGTGCTTTATAA
GCAGGTGGCAACTCTTTTCTTTTTACCCGAATATGTCAGTTGTCATGTATTTTGCAGGGTACACGACAACTGCCCTAGCG
TGCTTGTAAGCAGATGGTAACTCTCTTTTTTACTCGAACATGTTGTTTTGCCATGTCTTTTTGTAGCGCTACACGGCAAC
TGCCTAGTGTTAGTAGGTGGCAAACCCCTAAAGTTTCCAAATCATGGCAACTATAGTAAACCAGACCATACATGGCAACA
GCCGTAGTTGCCCAAAAATGGCATCTGGAATTTTTGACATGAGATGGCAACTGTAGTTGTCCGACATGGCAACCGTAGTT
CAACAACATGGCAATTGCAGTTAAACGAACATGGACGAGGGTCTGGACCATGGCAACTGCGGGCGCGCGGTGACTGTCAC
GCGGGCGTGCGGGACCACGAGGTATGAGGCCTGACGTACGGAGCGTGTGAGCGTTATCTATTTCGCCCACACGCACGTGT
GTGAGAGAGATCGGGAGGGAAAAAGAGGTATGTGGACATTACTTGTTTTGCCCACACGTAGATGTGTGGACTGTTCCTTA
TATACTTCACACAAAATGTGTGGGCAGACCCCTAATGCCCACACGTGTGGCACTTATCGACGTCCTTATTTATTTATTCA
AAATCAGCTCAACATAATAACCAGTAGCTATTCAAATC-AGAACTAGCACATCACGAACAAAAAAAATCCTAGGAATTAG
GAACGGGTACGAGTCAAATATGACACACGCGCTTCAGGTTAAAGAGATGCGTACACGATCTTTATGTTCTA----AATGT
TCATC-TTTGTTTCCACAAAGACAAAGACGCATACACTTGTCTACACTCTGGCTAGTGGTTGGGCATGCGACTGTACAGC
CTAATGACCCGAATTCAATTCCTAGAATGGCCGTATGCATCCTTAGTTCCGGTGCAGAGGCTGGGAAGTAAAATTCTCCC
CCATTTTTATAAGGGCCGCATGCATCATCATGATGCAGAGGCCGGGGTATGCCTCCATTTCAAAAAAAAAACACTTGTCT
ACACTCTTGGTCCGGCGGGCTAACTTAGCTATAAATAACCTCTCTCATGTTTCATTTTGCACTGCAGTTATTAACGGCAA
GGAACCCCAAATCTCCAACGTTAACCATCATATCTAAAGTTCTAAACACCAGAAGCCGAGCGCCCGGGGAC-AAAACCAT
GACCATCCTCTCCAAGGATGCTCCTACGGAGATCTCCCACCCCGCCCACCCGGAGCACAAGCTGAAGCTGATGGCCACCG
GCGCGGCGGAGTTCCAGTGCGACGTCTGCAAGGAGCTAGGCGCCGGGGACCGGTACACGTGCCGACCCTGCGACTTCGAC
CTCCACAGAGACTGCGCGCTCGCAGAGGCCACGCTGGCGCACCCATTGCTCAAGGGCAGAGAGTTCCAGCTCCGCCTCGA
GCACCCGCGCCACCGCGACGGCGGCGGCGGGACATGCGGCGCCTGCGGCGGGAAGGTGCTCGGGCTGCACTACCACTGCG
CCGCCAAGAAGGGCTCGGACCTCCACCCGTGCTGCGCGGCACTGCCGCTGGTGATCCCTCAGGAGGAGCTCACGCTCGAG
CTCCGGAAGGAGGCGTCTCACCGCTGCAGCAGCTGCCGGGAAAGAGGCAGGGGCAGGACCTGGTTCTACCGTTCCACCTG
CAAGACCGTGTACCTGCACGTGGCCTGCGTCAAAGAGATTGCTCGCCGGAGCCGTGGCGCCGGCGACGGCTCGAGTACCG
ATCCGTTCGCTTCCGTTAAGGAAGCGGCGGTGCAGATCTACCGCGCAAAGAAGGACGAGAGCGAGTTGGAGCGCGTCATT
CTCGAGCTGGTTCTTGGAGGTTGATGCTGCAAAGCTTTTCTCCCAGAAGAAAATTTGCAGGTTAATTAAA----------
--TAATTTGGTGATGAGCGAACGGGACTATTCCGTTTGTAGTAGTACTG-------------------------------
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>SNPs
--------S--------------------------------S-SS-----------S---------S---S---------
---------------S----------------------SS-------------------S--------------------
-S---S-------------------------------------------------------------SS-----------
------------S-------------S-----S---------SSSSSS-----S---S----S-----------------
-S---------------------------S--------------------------------------------------
-------------------------S-------SSS--------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS------------S-S------S------S-SS--------SSSSSSS----------------------S--S-----
----------S------------------------------SSSSSS-------------S-------------------
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-----------------------------------------------------------------------------S--
--------------------S-----------------------------------------------------------
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--------------------------------------------------------S-----S-------------SSS-
SSSSSS-----------------SS-------------------------------------------------------
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-----------S---------S----S------------S------SSS---S-SS-SS-SSSSSSSS----S-------
-----S------S---S-------S------------------------S--------------S------S--------
------S--------------S-------------------------------------------------S----S---
----------------------------------------------------------------S---------------
---------------------------------------------------------------S-----------S----
-------------S------S---------------S--------------------S----------------------
----------------------------------------S----------S------S---------------------
-----------------------------------------S-----------------------------S--------
--------------------------------S------S----------------S-----------------------
----------------S-----S----------------------------S---------S------------------
---------------------------S-----------------S-S---S-----------S----S-----------
---------S--------S-------------------S----S-S-S--SSS-SSS---S-SS-SSSS-SSS-SSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------SS--S----------S------SSS--S--------S-S---
------S--SSSS---S----S----S---S-S-S---S-S------S-S--------------------S---S----S
---SS---S-SS-------S----S-SSSS-SSSSSSSSSSS-SSSSSS-------------------S-----------
----------------------------------------------------------------S-SSSSSSS-------
S----S--------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_473
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-----------------------------------------------------AAAGCCCCGTGAAGAGCTAC-------
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>reverse_3830
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---------------------------------------------------------------------TGTTTCGATCC
GTGCTCACA-----------------------------------------------------------------------
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